Rh5DG063800

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0014820
Physical Location & Seq
Reverse (-)
5473905 .. 5474642
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG063800.1

Sequence Viewer

Length: 525 bp
ATGGCCTATGTGCCGAGAGATGAAGAGTTTGAGGAGTCCAAGATAGAAGCTCTTGATCTTGGAAAGTTAAAGGCAATTCTGAGGCACTGGATTACATCTTCTTGTTTGCCAGATGACGAGTTTGGCCGTCAAGCACTTGCAGGCATAAATCCTCTAAGCATAGAGAGACTCACAACTTTCCCACCTGTAGGCAAAATGAATGACTCAACTTATGGCCCACAAGAATCGGCATTCAAGGAAGAACACATAATAGGCCATGTAAATGGCATGTCTCTGCAACAGGCATTGGAAGAAAACAAACTGTTCATACTAGACTATCATGACATTTTCCTTTCGTTAATCAACCAAATAAATGCTATCGATGACCGAAAAGCTTATGCAACACGTACAATTTTTTTCCTCACCTCATTGGGAACAATATTAAAGCCCATTGCTATTGAGCTCAGTCTCCCTCAAACCAATTCAGATCCACCATCTAAGCAGGTTCTCACTCCTCCAGTCGATGCTACAACAAGTTGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

174

Amino Acids

19.5

Weight (kDa)

4.85

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipoxygenase PF00305 34 - 174 6e-51 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 472
AclWI GGATC 1 cut(s) 461
AcoI YGGCCR 1 cut(s) 124
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 383
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 3 cut(s) 50, 374, 442
AluI AGCT 3 cut(s) 50, 374, 442
Alw21I GWGCWC 1 cut(s) 444
Alw26I GTCTC 3 cut(s) 160, 276, 452
AlwI GGATC 1 cut(s) 461
AoxI GGCC 4 cut(s) 3, 124, 214, 253
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 394
BanII GRGCYC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 444
BccI CCATC 1 cut(s) 481
BceAI ACGGC 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 160, 276, 452
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 472
BmgT120I GGNCC 1 cut(s) 215
BmsI GCATC 1 cut(s) 493
BpmI CTGGAG 1 cut(s) 480
Bsa29I ATCGAT 1 cut(s) 360
BsaAI YACGTR 1 cut(s) 386
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 92, 497
Bse3DI GCAATG 1 cut(s) 429
BseCI ATCGAT 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 2 cut(s) 71, 457
BseNI ACTGG 2 cut(s) 92, 497
BseRI GAGGAG 2 cut(s) 47, 483
BshFI GGCC 4 cut(s) 5, 126, 216, 255
BshVI ATCGAT 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 444
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 3 cut(s) 160, 276, 452
BsmI GAATGC 1 cut(s) 230
BsnI GGCC 4 cut(s) 5, 126, 216, 255
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 2 cut(s) 55, 466
BspANI GGCC 4 cut(s) 5, 126, 216, 255
BspCNI CTCAG 2 cut(s) 72, 456
BspDI ATCGAT 1 cut(s) 360
BspHI TCATGA 1 cut(s) 319
BspMI ACCTGC 1 cut(s) 472
BspPI GGATC 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 2 cut(s) 92, 497
BssMI GATC 2 cut(s) 55, 466
Bst4CI ACNGT 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 18
BstBAI YACGTR 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 4 cut(s) 80, 155, 443, 477
BstKTI GATC 2 cut(s) 58, 469
BstMAI GTCTC 3 cut(s) 160, 276, 452
BstMBI GATC 2 cut(s) 55, 466
BstNSI RCATGY 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 466
BstXI CCANNNNNNTGG 1 cut(s) 263
BstYI RGATCY 1 cut(s) 466
Bsu15I ATCGAT 1 cut(s) 360
BsuRI GGCC 4 cut(s) 5, 126, 216, 255
BsuTUI ATCGAT 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 85
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 142
CciI TCATGA 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 215
ClaI ATCGAT 1 cut(s) 360
Csp6I GTAC 1 cut(s) 387
CviAII CATG 3 cut(s) 257, 268, 320
CviJI RGCY 9 cut(s) 5, 50, 126, 216, 255, 374, 427, 442, 520
CviKI_1 RGCY 9 cut(s) 5, 50, 126, 216, 255, 374, 427, 442, 520
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 4 cut(s) 80, 155, 443, 477
DpnI GATC 2 cut(s) 57, 468
DpnII GATC 2 cut(s) 55, 466
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 444
Eco53kI GAGCTC 1 cut(s) 442
EcoICRI GAGCTC 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 444
FaeI CATG 3 cut(s) 260, 271, 323
FatI CATG 3 cut(s) 256, 267, 319
FriOI GRGCYC 1 cut(s) 444
FspBI CTAG 1 cut(s) 311
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 4 cut(s) 5, 126, 216, 255
Hin1II CATG 3 cut(s) 260, 271, 323
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 4 cut(s) 35, 168, 203, 224
HphI GGTGA 1 cut(s) 394
Hpy188I TCNGA 2 cut(s) 81, 466
Hpy188III TCNNGA 2 cut(s) 53, 320
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 3 cut(s) 140, 277, 380
HpyF3I CTNAG 4 cut(s) 80, 155, 443, 477
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 3 cut(s) 260, 271, 323
Kzo9I GATC 2 cut(s) 55, 466
LpnPI CCDG 7 cut(s) 73, 123, 126, 198, 266, 467, 510
LweI GCATC 1 cut(s) 493
MaeI CTAG 1 cut(s) 311
MaeII ACGT 1 cut(s) 385
MalI GATC 2 cut(s) 57, 468
MboI GATC 2 cut(s) 55, 466
MboII GAAGA 4 cut(s) 35, 90, 251, 302
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 3 cut(s) 75, 390, 460
MlyI GAGTC 3 cut(s) 44, 162, 197
MnlI CCTC 7 cut(s) 25, 75, 162, 410, 415, 462, 504
MseI TTAA 3 cut(s) 68, 338, 422
MslI CAYNNNNRTG 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 230
NdeII GATC 2 cut(s) 55, 466
NlaIII CATG 3 cut(s) 260, 271, 323
NmeAIII GCCGAG 1 cut(s) 39
NspI RCATGY 1 cut(s) 271
PagI TCATGA 1 cut(s) 319
PctI GAATGC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 224
PleI GAGTC 3 cut(s) 43, 162, 197
PpsI GAGTC 3 cut(s) 43, 162, 197
Ppu21I YACGTR 1 cut(s) 386
Psp124BI GAGCTC 1 cut(s) 444
PspPI GGNCC 1 cut(s) 215
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
RseI CAYNNNNRTG 1 cut(s) 261
SacI GAGCTC 1 cut(s) 444
SaqAI TTAA 3 cut(s) 68, 338, 422
Sau3AI GATC 2 cut(s) 55, 466
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 3 cut(s) 44, 162, 197
SduI GDGCHC 1 cut(s) 444
SetI ASST 7 cut(s) 52, 187, 376, 388, 407, 444, 486
SfaNI GCATC 1 cut(s) 493
SfcI CTRYAG 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 3 cut(s) 75, 390, 460
SspI AATATT 1 cut(s) 420
SspMI CTAG 1 cut(s) 311
SstI GAGCTC 1 cut(s) 444
TaaI ACNGT 1 cut(s) 303
TaiI ACGT 1 cut(s) 388
TaqI TCGA 2 cut(s) 360, 501
TaqII GACCGA 1 cut(s) 381
TasI AATT 3 cut(s) 75, 390, 460
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 3 cut(s) 68, 338, 422
Tru9I TTAA 3 cut(s) 68, 338, 422
TscAI CASTG 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 36, 212, 295
TspRI CASTG 1 cut(s) 92
XceI RCATGY 1 cut(s) 271
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.