Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014820

Physical Location & Seq

Genomic Coordinates Reverse (-)

3391747 .. 3393195

Gene Structure 1449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTCAACTTGCTTGCTTATCTACTGAAATCGTTGGTTCAACACATTAGACCAGAGCTACAAGATAGATTTGACAAAACTCATCAGGAGTTTAACAGCTTTCAAGATGTACTCAACCTCTATGAAGGAGGGATTCCGTTGCCGGAAGGTTTATTAAAGGATATTGGCGACAAAATTCCTTTGCGAATGATCAAGGAAATTTTCCGAATCGACGGTGAACGATTCCTTAGATTACCGGTGCCTCAAGTGATCAAAGGCGATAGGACTGCTTGGAGGACTGACGAAGAATTTGCCAGAGAAATGCTGGCTGGAGTCAACCCTGTAACCATTCGTCGCCTTCAAACGTTTCCACCAGCAAGCAAACTAGATCCAAATGTTTATGGTGATCACAGCAGTACCATAACAGAACACCACATCAAGAATAACTTGGATGGGCTAACGGTGCATCAGGCACTCAGGGACAACAAGTTATTCATATTAGACCATCATGATGCCTTCATGCCGTACCTGAGGCGGATAAAATCGACTGAAAACAAGATCTATGGCAGCAGGACACTCCTTTTCTTGAAAAGTGATGGGACTTTGAAGCCATTGGTGATTGAACTAAGCTTGCCTCATCCTGATGGAGATCAATTTGGTTGCACTAGCAAAGTATATACACCAGCTGAACTTGGTGTTGAGAGCTCCATATGGCAACTGGCTAAGGCTTATGCGGCTGTAAATGACTCTGAATTTCATCAACTGATCAGTCACTGGTATTATTACTCTACTCCTGCCAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0044424 GO:0044464 GO:0051213 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

261

Amino Acids

30.06

Weight (kDa)

6.42

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	4 - 253	3.8e-91	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014820)

Species	Orthologous Gene IDs
malus_domestica	MD05G1339500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0308151
rosa_laevigata	RLG00000025409
rosa_multiflora	Rmu_co8047918.1_g000001 Rmu_co8430331.1_g000001 Rmu_sc0001665.1_g000008 Rmu_sc0004189.1_g000039 Rmu_sc0005706.1_g000008 Rmu_sc0019919.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085130 Rroxscaffold_7G00160430 Rroxscaffold_7G00160510
rosa_samantha	Rh5CG072100 Rh5CG072700 Rh5DG010100 Rh5DG063800 Rh6AG473300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AciI	CCGC	2 cut(s)	514, 713
AclI	AACGTT	1 cut(s)	344
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	4 cut(s)	174, 198, 287, 731
AfaI	GTAC	3 cut(s)	111, 397, 506
AgeI	ACCGGT	1 cut(s)	235
AgsI	TTSAA	7 cut(s)	7, 41, 104, 341, 568, 586, 602
AluBI	AGCT	5 cut(s)	58, 99, 609, 665, 684
AluI	AGCT	5 cut(s)	58, 99, 609, 665, 684
Alw21I	GWGCWC	1 cut(s)	686
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	753
ApeKI	GCWGC	1 cut(s)	546
ApoI	RAATTY	4 cut(s)	174, 198, 287, 731
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AsiGI	ACCGGT	1 cut(s)	235
AsuHPI	GGTGA	3 cut(s)	227, 395, 607
AxyI	CCTNAGG	1 cut(s)	509
BaeI	ACNNNNGTAYC	2 cut(s)	379, 412
BanI	GGYRCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	686
Bbv12I	GWGCWC	1 cut(s)	686
BbvI	GCAGC	1 cut(s)	558
BccI	CCATC	4 cut(s)	425, 492, 569, 617
BceAI	ACGGC	1 cut(s)	487
BcgI	CGANNNNNNTGC	4 cut(s)	248, 272, 282, 306
BclI	TGATCA	4 cut(s)	189, 249, 385, 744
BfaI	CTAG	2 cut(s)	365, 645
BglII	AGATCT	1 cut(s)	537
BisI	GCNGC	2 cut(s)	547, 714
BlsI	GCNGC	2 cut(s)	548, 715
BmiI	GGNNCC	1 cut(s)	240
BmsI	GCATC	2 cut(s)	454, 481
BpmI	CTGGAG	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	627
BsaWI	WCCGGW	1 cut(s)	235
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	2 cut(s)	702, 758
Bse21I	CCTNAGG	1 cut(s)	509
Bse8I	GATNNNNATC	1 cut(s)	627
BseGI	GGATG	2 cut(s)	436, 616
BseJI	GATNNNNATC	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	469, 500
BseNI	ACTGG	2 cut(s)	702, 758
BseXI	GCAGC	1 cut(s)	558
BshNI	GGYRCC	1 cut(s)	238
BshTI	ACCGGT	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	686
BsiSI	CCGG	2 cut(s)	143, 236
BslFI	GGGAC	2 cut(s)	473, 592
BsmFI	GGGAC	2 cut(s)	473, 592
Bsp1286I	GDGCHC	1 cut(s)	686
Bsp143I	GATC	7 cut(s)	189, 249, 367, 385, 537, 628, 744
BspACI	CCGC	2 cut(s)	514, 713
BspCNI	CTCAG	2 cut(s)	468, 501
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	702, 758
BssAI	RCCGGY	1 cut(s)	235
BssMI	GATC	7 cut(s)	189, 249, 367, 385, 537, 628, 744
Bst4CI	ACNGT	2 cut(s)	215, 442
BstC8I	GCNNGC	4 cut(s)	15, 306, 358, 611
BstDEI	CTNAG	5 cut(s)	227, 455, 509, 605, 702
BstF5I	GGATG	2 cut(s)	436, 616
BstKTI	GATC	7 cut(s)	192, 252, 370, 388, 540, 631, 747
BstMBI	GATC	7 cut(s)	189, 249, 367, 385, 537, 628, 744
BstMWI	GCNNNNNNNGC	2 cut(s)	442, 713
BstV1I	GCAGC	1 cut(s)	558
BstX2I	RGATCY	2 cut(s)	367, 537
BstYI	RGATCY	2 cut(s)	367, 537
Bsu36I	CCTNAGG	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	436, 616
BtsIMutI	CAGTG	1 cut(s)	751
Cac8I	GCNNGC	4 cut(s)	15, 306, 358, 611
CaiI	CAGNNNCTG	1 cut(s)	753
CciI	TCATGA	1 cut(s)	487
Cfr10I	RCCGGY	1 cut(s)	235
Csp6I	GTAC	3 cut(s)	110, 396, 505
CspAI	ACCGGT	1 cut(s)	235
CviAII	CATG	2 cut(s)	488, 499
CviQI	GTAC	3 cut(s)	110, 396, 505
DdeI	CTNAG	5 cut(s)	227, 455, 509, 605, 702
DpnI	GATC	7 cut(s)	191, 251, 369, 387, 539, 630, 746
DpnII	GATC	7 cut(s)	189, 249, 367, 385, 537, 628, 744
EciI	GGCGGA	1 cut(s)	529
Ecl136II	GAGCTC	1 cut(s)	684
Eco24I	GRGCYC	1 cut(s)	686
Eco53kI	GAGCTC	1 cut(s)	684
Eco81I	CCTNAGG	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	684
EcoT38I	GRGCYC	1 cut(s)	686
FaeI	CATG	2 cut(s)	491, 502
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	2 cut(s)	473, 592
FatI	CATG	2 cut(s)	487, 498
FauNDI	CATATG	1 cut(s)	689
FbaI	TGATCA	4 cut(s)	189, 249, 385, 744
Fnu4HI	GCNGC	2 cut(s)	547, 714
FokI	GGATG	2 cut(s)	443, 603
FriOI	GRGCYC	1 cut(s)	686
Fsp4HI	GCNGC	2 cut(s)	547, 714
FspBI	CTAG	2 cut(s)	365, 645
GluI	GCNGC	2 cut(s)	547, 714
GsuI	CTGGAG	1 cut(s)	330
HapII	CCGG	2 cut(s)	143, 236
Hin1II	CATG	2 cut(s)	491, 502
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	5 cut(s)	133, 207, 222, 312, 725
HpaII	CCGG	2 cut(s)	143, 236
HphI	GGTGA	3 cut(s)	227, 395, 607
Hpy166II	GTNNAC	2 cut(s)	218, 316
Hpy188I	TCNGA	2 cut(s)	206, 730
Hpy188III	TCNNGA	6 cut(s)	86, 104, 418, 488, 565, 620
Hpy8I	GTNNAC	2 cut(s)	218, 316
Hpy99I	CGWCG	2 cut(s)	215, 336
HpyAV	CCTTC	4 cut(s)	119, 140, 347, 505
HpyCH4III	ACNGT	2 cut(s)	215, 442
HpyCH4IV	ACGT	1 cut(s)	344
HpyCH4V	TGCA	2 cut(s)	445, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	442, 713
HpyF3I	CTNAG	5 cut(s)	227, 455, 509, 605, 702
HpySE526I	ACGT	1 cut(s)	344
Hsp92II	CATG	2 cut(s)	491, 502
Ksp22I	TGATCA	4 cut(s)	189, 249, 385, 744
Kzo9I	GATC	7 cut(s)	189, 249, 367, 385, 537, 628, 744
LmnI	GCTCC	1 cut(s)	689
Lsp1109I	GCAGC	1 cut(s)	558
LweI	GCATC	2 cut(s)	454, 481
MaeI	CTAG	2 cut(s)	365, 645
MaeII	ACGT	1 cut(s)	344
MaeIII	GTNAC	2 cut(s)	322, 749
MalI	GATC	7 cut(s)	191, 251, 369, 387, 539, 630, 746
MboI	GATC	7 cut(s)	189, 249, 367, 385, 537, 628, 744
MboII	GAAGA	1 cut(s)	296
MflI	RGATCY	2 cut(s)	367, 537
MhlI	GDGCHC	1 cut(s)	686
MluCI	AATT	5 cut(s)	174, 198, 287, 632, 731
MlyI	GAGTC	2 cut(s)	321, 719
MnlI	CCTC	6 cut(s)	122, 128, 252, 267, 504, 624
MseI	TTAA	2 cut(s)	93, 155
MslI	CAYNNNNRTG	2 cut(s)	489, 621
MspA1I	CMGCKG	1 cut(s)	665
MspI	CCGG	2 cut(s)	143, 236
MwoI	GCNNNNNNNGC	2 cut(s)	442, 713
NdeI	CATATG	1 cut(s)	689
NdeII	GATC	7 cut(s)	189, 249, 367, 385, 537, 628, 744
NlaIII	CATG	2 cut(s)	491, 502
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	749
PagI	TCATGA	1 cut(s)	487
PfeI	GAWTC	3 cut(s)	133, 207, 222
PinAI	ACCGGT	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	548, 715
PleI	GAGTC	2 cut(s)	320, 719
PpsI	GAGTC	2 cut(s)	320, 719
Psp124BI	GAGCTC	1 cut(s)	686
Psp1406I	AACGTT	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	240
PstNI	CAGNNNCTG	1 cut(s)	753
PsuI	RGATCY	2 cut(s)	367, 537
PvuII	CAGCTG	1 cut(s)	665
RsaI	GTAC	3 cut(s)	111, 397, 506
RsaNI	GTAC	3 cut(s)	110, 396, 505
RseI	CAYNNNNRTG	2 cut(s)	489, 621
SacI	GAGCTC	1 cut(s)	686
SaqAI	TTAA	2 cut(s)	93, 155
SatI	GCNGC	2 cut(s)	547, 714
Sau3AI	GATC	7 cut(s)	189, 249, 367, 385, 537, 628, 744
SchI	GAGTC	2 cut(s)	321, 719
SduI	GDGCHC	1 cut(s)	686
SetI	ASST	9 cut(s)	60, 101, 120, 151, 347, 510, 611, 667, 686
SfaNI	GCATC	2 cut(s)	454, 481
SmiMI	CAYNNNNRTG	2 cut(s)	489, 621
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	5 cut(s)	174, 198, 287, 632, 731
SsiI	CCGC	2 cut(s)	514, 713
SspMI	CTAG	2 cut(s)	365, 645
SstI	GAGCTC	1 cut(s)	686
TaaI	ACNGT	2 cut(s)	215, 442
TaiI	ACGT	1 cut(s)	347
TaqI	TCGA	2 cut(s)	210, 524
TasI	AATT	5 cut(s)	174, 198, 287, 632, 731
TatI	WGTACW	1 cut(s)	109
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	3 cut(s)	133, 207, 222
Tru1I	TTAA	2 cut(s)	93, 155
Tru9I	TTAA	2 cut(s)	93, 155
TscAI	CASTG	1 cut(s)	758
TseFI	GTSAC	1 cut(s)	749
TseI	GCWGC	1 cut(s)	546
Tsp45I	GTSAC	1 cut(s)	749
TspDTI	ATGAA	4 cut(s)	138, 463, 487, 725
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	758
XapI	RAATTY	4 cut(s)	174, 198, 287, 731
XcmI	CCANNNNNNNNNTGG	2 cut(s)	301, 694
XspI	CTAG	2 cut(s)	365, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.