Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014820

Physical Location & Seq

Genomic Coordinates Reverse (-)

45629490 .. 45631433

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025409

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTCAAATTTATTCGGGGTGAGGTTTCTGGAAAGATCATTGCATTCGATACCATTTCATTAGATCCAGAGGATTATAGGCTGGTGGCTGTTTTGAGCAAGAAGCTTGCTTTCCTGTTATCAAACTGCCAAATTGTGCAACTGACTTTGCACTCGAGTAACAAGCTATTCATATTAGACCATCATGATTCAGTGATGCCATATTTAAGGCGTATAAATTCAAATACCTCCTCAAAGATCTATGCTAGCAGGACACTGCTTTTCTTAAAAAGTGATGGAACTTTGCAGCCATTGGTGATTGAACTGAGCTTGCCTCATCCTGATGGAGATCAACTCAGTCGCATTAGCAGTGTGTTCACACCAGCTGAAGGAGGTGTGGAAAGCTCCATGTGGCAGCTGGCCAAAGCTTATGTTGCCGCAAATGACTCTGGAGTTCATCAACTTATCAATCACTGGCATTACTCTTTTAAACAATCCTTAAGGAACAAGTTCATCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0044424 GO:0044464 GO:0051213 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

167

Amino Acids

18.75

Weight (kDa)

9.04

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	52 - 154	2.5e-42	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014820)

Species	Orthologous Gene IDs
malus_domestica	MD05G1339500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0308151
rosa_laevigata	RLG00000025409
rosa_multiflora	Rmu_co8047918.1_g000001 Rmu_co8430331.1_g000001 Rmu_sc0001665.1_g000008 Rmu_sc0004189.1_g000039 Rmu_sc0005706.1_g000008 Rmu_sc0019919.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085130 Rroxscaffold_7G00160430 Rroxscaffold_7G00160510
rosa_samantha	Rh5CG072100 Rh5CG072700 Rh5DG010100 Rh5DG063800 Rh6AG473300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	417
AclWI	GGATC	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	2 cut(s)	8, 217
AcuI	CTGAAG	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	368
AflII	CTTAAG	1 cut(s)	478
AgsI	TTSAA	3 cut(s)	7, 222, 302
AluBI	AGCT	7 cut(s)	106, 166, 309, 365, 384, 397, 407
AluI	AGCT	7 cut(s)	106, 166, 309, 365, 384, 397, 407
AlwI	GGATC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	286, 394
ApoI	RAATTY	2 cut(s)	8, 217
Asp700I	GAANNNNTTC	1 cut(s)	488
AsuHPI	GGTGA	2 cut(s)	32, 307
AsuNHI	GCTAGC	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	298, 406
BccI	CCATC	3 cut(s)	189, 269, 317
BfaI	CTAG	1 cut(s)	246
BfrI	CTTAAG	1 cut(s)	478
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	3 cut(s)	287, 395, 417
BlsI	GCNGC	3 cut(s)	288, 396, 418
BmeT110I	CYCGRG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	186
BmtI	GCTAGC	1 cut(s)	249
BplI	GAGNNNNNCTC	4 cut(s)	298, 330, 318, 350
BpmI	CTGGAG	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	39
Bse8I	GATNNNNATC	1 cut(s)	327
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	296, 349
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	298, 406
BshFI	GGCC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmI	GAATGC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	401
BsoBI	CYCGRG	1 cut(s)	154
Bsp143I	GATC	4 cut(s)	36, 64, 237, 328
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	2 cut(s)	297, 348
BspHI	TCATGA	1 cut(s)	184
BspOI	GCTAGC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	59
BspTI	CTTAAG	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	458
BssMI	GATC	4 cut(s)	36, 64, 237, 328
BstAFI	CTTAAG	1 cut(s)	478
BstC8I	GCNNGC	4 cut(s)	108, 247, 311, 399
BstDEI	CTNAG	2 cut(s)	305, 335
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	4 cut(s)	39, 67, 240, 331
BstMBI	GATC	4 cut(s)	36, 64, 237, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstV1I	GCAGC	2 cut(s)	298, 406
BstX2I	RGATCY	2 cut(s)	64, 237
BstYI	RGATCY	2 cut(s)	64, 237
BsuRI	GGCC	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	316
BtsI	GCAGTG	2 cut(s)	254, 355
BtsIMutI	CAGTG	4 cut(s)	198, 254, 355, 451
Cac8I	GCNNGC	4 cut(s)	108, 247, 311, 399
CciI	TCATGA	1 cut(s)	184
CviAII	CATG	2 cut(s)	185, 388
DdeI	CTNAG	2 cut(s)	305, 335
DpnI	GATC	4 cut(s)	38, 66, 239, 330
DpnII	GATC	4 cut(s)	36, 64, 237, 328
DraI	TTTAAA	1 cut(s)	469
EaeI	YGGCCR	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	154
FaeI	CATG	2 cut(s)	188, 391
FaiI	YATR	8 cut(s)	78, 173, 186, 202, 215, 243, 389, 411
FatI	CATG	2 cut(s)	184, 387
Fnu4HI	GCNGC	3 cut(s)	287, 395, 417
FokI	GGATG	1 cut(s)	303
Fsp4HI	GCNGC	3 cut(s)	287, 395, 417
FspBI	CTAG	1 cut(s)	246
GluI	GCNGC	3 cut(s)	287, 395, 417
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	401
Hin1II	CATG	2 cut(s)	188, 391
HindIII	AAGCTT	2 cut(s)	104, 405
HinfI	GANTC	2 cut(s)	188, 425
HphI	GGTGA	2 cut(s)	32, 307
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188III	TCNNGA	5 cut(s)	30, 68, 185, 320, 429
Hpy8I	GTNNAC	1 cut(s)	357
HpyAV	CCTTC	1 cut(s)	362
HpyCH4V	TGCA	4 cut(s)	44, 139, 151, 286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	2 cut(s)	305, 335
Hsp92II	CATG	2 cut(s)	188, 391
Kzo9I	GATC	4 cut(s)	36, 64, 237, 328
LmnI	GCTCC	1 cut(s)	389
Lsp1109I	GCAGC	2 cut(s)	298, 406
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	4 cut(s)	38, 66, 239, 330
MboI	GATC	4 cut(s)	36, 64, 237, 328
MflI	RGATCY	2 cut(s)	64, 237
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	3 cut(s)	8, 132, 217
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	1 cut(s)	419
MnlI	CCTC	6 cut(s)	16, 64, 238, 241, 324, 365
Mox20I	TGGCCA	1 cut(s)	401
MroXI	GAANNNNTTC	1 cut(s)	488
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	4 cut(s)	206, 266, 468, 479
MslI	CAYNNNNRTG	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	401
MspA1I	CMGCKG	2 cut(s)	365, 397
MspCI	CTTAAG	1 cut(s)	478
Mva1269I	GAATGC	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	413
NdeII	GATC	4 cut(s)	36, 64, 237, 328
NheI	GCTAGC	1 cut(s)	245
NlaIII	CATG	2 cut(s)	188, 391
PaeR7I	CTCGAG	1 cut(s)	154
PagI	TCATGA	1 cut(s)	184
PctI	GAATGC	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	288, 396, 418
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PspXI	VCTCGAGB	1 cut(s)	154
PsuI	RGATCY	2 cut(s)	64, 237
PvuII	CAGCTG	2 cut(s)	365, 397
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	4 cut(s)	206, 266, 468, 479
SatI	GCNGC	3 cut(s)	287, 395, 417
Sau3AI	GATC	4 cut(s)	36, 64, 237, 328
SchI	GAGTC	1 cut(s)	419
SfaNI	GCATC	1 cut(s)	186
Sfr274I	CTCGAG	1 cut(s)	154
SlaI	CTCGAG	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	2 cut(s)	154, 478
SmoI	CTYRAG	2 cut(s)	154, 478
Sse9I	AATT	3 cut(s)	8, 132, 217
SsiI	CCGC	1 cut(s)	417
SspMI	CTAG	1 cut(s)	246
TaqI	TCGA	2 cut(s)	48, 155
TasI	AATT	3 cut(s)	8, 132, 217
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	4 cut(s)	206, 266, 468, 479
Tru9I	TTAA	4 cut(s)	206, 266, 468, 479
TscAI	CASTG	4 cut(s)	198, 261, 355, 458
TseI	GCWGC	2 cut(s)	286, 394
TspDTI	ATGAA	4 cut(s)	48, 160, 425, 481
TspRI	CASTG	4 cut(s)	198, 261, 355, 458
Vha464I	CTTAAG	1 cut(s)	478
XapI	RAATTY	2 cut(s)	8, 217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.