Rmu_sc0019919.1_g000003

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019919.1
OG0014820
Physical Location & Seq
Reverse (-)
7879 .. 9032
1154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019919.1_g000003.1.cds

Sequence Viewer

Length: 630 bp
atggcctatgtgccgagagatgaagagtttgaggagtccaagatagaagctcttgatcttggaaagttaaagccaattctgaggcactggattacatcttcttgtttgccagatgacgagtttggccgtcaagcacttgcaggcataaatcctctaagcatagagagactcacaactttcccacctgtaggcaaaatgaatgactcaacttatggcccacaagaatcggcattcaaggaagaacacataataggccatgtaaatggcatgtctctgcaacagatccaccatctaagcaggttctcactcctccagtcgatgctacaacaagttggctttgagaacttggcaaagcccatgttgcgcagccatgcgtgtatggaaccctttatcatggcaacccaccggcagctgggtgcgatgcatcccatctacaggcttctcaaacctcacatgcgatacacgatgaagataaatgcattggcccgtcaatttctgatcaattctgaaggaataatcgagtcgactttcactgctggcaaacatagcatggagattagttgtgctgcatatcgggactggtggcgctttgaccttgagggccttcctgcagatctcatcagaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

209

Amino Acids

23.99

Weight (kDa)

6.8

Isoelectric Point (pI)

64.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 365
Acc36I ACCTGC 1 cut(s) 288
AccI GTMKAC 1 cut(s) 524
AclWI GGATC 1 cut(s) 277
AcoI YGGCCR 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 528
AfiI CCNNNNNNNGG 3 cut(s) 188, 412, 435
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 2 cut(s) 50, 412
AluI AGCT 2 cut(s) 50, 412
Alw26I GTCTC 2 cut(s) 160, 276
AlwI GGATC 1 cut(s) 277
AoxI GGCC 6 cut(s) 3, 124, 214, 253, 483, 601
ApeKI GCWGC 3 cut(s) 366, 409, 566
AspLEI GCGC 2 cut(s) 366, 588
AspS9I GGNCC 3 cut(s) 215, 484, 601
BbvI GCAGC 3 cut(s) 378, 421, 553
BccI CCATC 2 cut(s) 297, 437
BceAI ACGGC 1 cut(s) 111
BclI TGATCA 1 cut(s) 498
BcoDI GTCTC 2 cut(s) 160, 276
BfmI CTRYAG 3 cut(s) 186, 433, 609
BfoI RGCGCY 1 cut(s) 589
BfuAI ACCTGC 1 cut(s) 288
BglII AGATCT 1 cut(s) 613
BisI GCNGC 3 cut(s) 367, 410, 567
BlsI GCNGC 3 cut(s) 368, 411, 568
BmgT120I GGNCC 3 cut(s) 215, 484, 601
BmiI GGNNCC 1 cut(s) 384
BmsI GCATC 3 cut(s) 309, 411, 433
BpmI CTGGAG 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 617
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 412, 435
Bse118I RCCGGY 1 cut(s) 405
Bse1I ACTGG 3 cut(s) 92, 313, 584
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 3 cut(s) 188, 412, 435
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 3 cut(s) 92, 313, 584
BseRI GAGGAG 2 cut(s) 47, 299
BseXI GCAGC 3 cut(s) 378, 421, 553
BseYI CCCAGC 1 cut(s) 412
BshFI GGCC 6 cut(s) 5, 126, 216, 255, 485, 603
BsiSI CCGG 1 cut(s) 406
BslFI GGGAC 1 cut(s) 590
BslI CCNNNNNNNGG 3 cut(s) 188, 412, 435
BsmAI GTCTC 2 cut(s) 160, 276
BsmFI GGGAC 1 cut(s) 590
BsmI GAATGC 1 cut(s) 230
BsnI GGCC 6 cut(s) 5, 126, 216, 255, 485, 603
Bsp143I GATC 4 cut(s) 55, 282, 498, 613
BspANI GGCC 6 cut(s) 5, 126, 216, 255, 485, 603
BspCNI CTCAG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 384
BspMAI CTGCAG 1 cut(s) 613
BspMI ACCTGC 1 cut(s) 288
BspPI GGATC 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 405
BsrI ACTGG 3 cut(s) 92, 313, 584
BssAI RCCGGY 1 cut(s) 405
BssMI GATC 4 cut(s) 55, 282, 498, 613
Bst6I CTCTTC 1 cut(s) 18
BstC8I GCNNGC 2 cut(s) 142, 538
BstDEI CTNAG 3 cut(s) 80, 155, 293
BstF5I GGATG 1 cut(s) 424
BstH2I RGCGCY 1 cut(s) 589
BstHHI GCGC 2 cut(s) 366, 588
BstKTI GATC 4 cut(s) 58, 285, 501, 616
BstMAI GTCTC 2 cut(s) 160, 276
BstMBI GATC 4 cut(s) 55, 282, 498, 613
BstMWI GCNNNNNNNGC 2 cut(s) 361, 546
BstNSI RCATGY 2 cut(s) 271, 457
BstSFI CTRYAG 3 cut(s) 186, 433, 609
BstV1I GCAGC 3 cut(s) 378, 421, 553
BstX2I RGATCY 2 cut(s) 282, 613
BstXI CCANNNNNNTGG 1 cut(s) 263
BstYI RGATCY 2 cut(s) 282, 613
BsuRI GGCC 6 cut(s) 5, 126, 216, 255, 485, 603
BtgZI GCGATG 1 cut(s) 434
BtsCI GGATG 1 cut(s) 424
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 2 cut(s) 85, 531
BveI ACCTGC 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 142, 538
CfoI GCGC 2 cut(s) 366, 588
Cfr10I RCCGGY 1 cut(s) 405
Cfr13I GGNCC 3 cut(s) 215, 484, 601
CviAII CATG 7 cut(s) 257, 268, 358, 371, 394, 454, 550
DdeI CTNAG 3 cut(s) 80, 155, 293
DpnI GATC 4 cut(s) 57, 284, 500, 615
DpnII GATC 4 cut(s) 55, 282, 498, 613
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 528
EcoO109I RGGNCCY 1 cut(s) 601
EcoT22I ATGCAT 2 cut(s) 426, 481
FaeI CATG 7 cut(s) 260, 271, 361, 374, 397, 457, 553
FaqI GGGAC 1 cut(s) 590
FatI CATG 7 cut(s) 256, 267, 357, 370, 393, 453, 549
FbaI TGATCA 1 cut(s) 498
FblI GTMKAC 1 cut(s) 524
Fnu4HI GCNGC 3 cut(s) 367, 410, 567
FokI GGATG 1 cut(s) 411
Fsp4HI GCNGC 3 cut(s) 367, 410, 567
FspI TGCGCA 1 cut(s) 365
GlaI GCGC 2 cut(s) 365, 587
GluI GCNGC 3 cut(s) 367, 410, 567
GsaI CCCAGC 1 cut(s) 416
GsuI CTGGAG 1 cut(s) 296
HaeII RGCGCY 1 cut(s) 589
HaeIII GGCC 6 cut(s) 5, 126, 216, 255, 485, 603
HapII CCGG 1 cut(s) 406
HhaI GCGC 2 cut(s) 366, 588
Hin1II CATG 7 cut(s) 260, 271, 361, 374, 397, 457, 553
Hin6I GCGC 2 cut(s) 364, 586
HinP1I GCGC 2 cut(s) 364, 586
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HinfI GANTC 5 cut(s) 35, 168, 203, 224, 521
HpaII CCGG 1 cut(s) 406
Hpy166II GTNNAC 1 cut(s) 525
Hpy188I TCNGA 4 cut(s) 81, 498, 508, 623
Hpy188III TCNNGA 2 cut(s) 53, 575
Hpy8I GTNNAC 1 cut(s) 525
HpyAV CCTTC 3 cut(s) 503, 614, 618
HpyCH4V TGCA 6 cut(s) 140, 277, 424, 479, 569, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 361, 546
HpyF3I CTNAG 3 cut(s) 80, 155, 293
Hsp92II CATG 7 cut(s) 260, 271, 361, 374, 397, 457, 553
HspAI GCGC 2 cut(s) 364, 586
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 4 cut(s) 55, 282, 498, 613
Lsp1109I GCAGC 3 cut(s) 378, 421, 553
LweI GCATC 3 cut(s) 309, 411, 433
MalI GATC 4 cut(s) 57, 284, 500, 615
MboI GATC 4 cut(s) 55, 282, 498, 613
MboII GAAGA 4 cut(s) 35, 90, 251, 481
MflI RGATCY 2 cut(s) 282, 613
MluCI AATT 3 cut(s) 75, 491, 502
MlyI GAGTC 4 cut(s) 44, 162, 197, 530
MnlI CCTC 6 cut(s) 25, 75, 162, 320, 459, 592
Mph1103I ATGCAT 2 cut(s) 426, 481
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 1 cut(s) 406
Mva1269I GAATGC 1 cut(s) 230
MwoI GCNNNNNNNGC 2 cut(s) 361, 546
NdeII GATC 4 cut(s) 55, 282, 498, 613
NlaIII CATG 7 cut(s) 260, 271, 361, 374, 397, 457, 553
NlaIV GGNNCC 1 cut(s) 384
NmeAIII GCCGAG 1 cut(s) 39
NsbI TGCGCA 1 cut(s) 365
NsiI ATGCAT 2 cut(s) 426, 481
NspI RCATGY 2 cut(s) 271, 457
PctI GAATGC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 3 cut(s) 368, 411, 568
PleI GAGTC 4 cut(s) 43, 162, 197, 529
PpsI GAGTC 4 cut(s) 43, 162, 197, 529
PspFI CCCAGC 1 cut(s) 412
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 3 cut(s) 215, 484, 601
PstI CTGCAG 1 cut(s) 613
PsuI RGATCY 2 cut(s) 282, 613
PvuII CAGCTG 1 cut(s) 412
RseI CAYNNNNRTG 1 cut(s) 261
SalI GTCGAC 1 cut(s) 523
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 3 cut(s) 367, 410, 567
Sau3AI GATC 4 cut(s) 55, 282, 498, 613
Sau96I GGNCC 3 cut(s) 215, 484, 601
SchI GAGTC 4 cut(s) 44, 162, 197, 530
SetI ASST 7 cut(s) 52, 187, 302, 414, 451, 597, 629
SfaNI GCATC 3 cut(s) 309, 411, 433
SfcI CTRYAG 3 cut(s) 186, 433, 609
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 3 cut(s) 75, 491, 502
TaqI TCGA 3 cut(s) 317, 519, 524
TasI AATT 3 cut(s) 75, 491, 502
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 2 cut(s) 92, 538
TseI GCWGC 3 cut(s) 366, 409, 566
TspDTI ATGAA 3 cut(s) 36, 212, 482
TspRI CASTG 2 cut(s) 92, 538
XceI RCATGY 2 cut(s) 271, 457
XmiI GTMKAC 1 cut(s) 524
Zsp2I ATGCAT 2 cut(s) 426, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.