Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8430331.1

Orthogroup ID

OG0014820

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1413

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8430331.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 359 bp

atgccgtacctgaggcggaaaaactcgaccgaaaacaagatctatggcagcaggacagtactactccttttcttgaaaagtgatgggactttgaagccattggtgattgaactaagcttgcctcatcgtaatggagatcaatttggttgcactagcaaagtatgtacaccagctgaacatggtgttgagagctccatatggcaactggctaaggcttatgcggctgtaaatgactctggatttcatccaactgatcagtcactgagggccgagatggctgtcaaggatgccaattctccacacggtgttcgcctactgatagaggactacccatatgctgttgatggactgaatatttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0044424 GO:0044464 GO:0051213 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

119

Amino Acids

13.16

Weight (kDa)

6.9

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014820)

Species	Orthologous Gene IDs
malus_domestica	MD05G1339500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0308151
rosa_laevigata	RLG00000025409
rosa_multiflora	Rmu_co8047918.1_g000001 Rmu_co8430331.1_g000001 Rmu_sc0001665.1_g000008 Rmu_sc0004189.1_g000039 Rmu_sc0005706.1_g000008 Rmu_sc0019919.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085130 Rroxscaffold_7G00160430 Rroxscaffold_7G00160510
rosa_samantha	Rh5CG072100 Rh5CG072700 Rh5DG010100 Rh5DG063800 Rh6AG473300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	16, 221
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	3 cut(s)	8, 60, 166
AgsI	TTSAA	3 cut(s)	76, 94, 110
AluBI	AGCT	3 cut(s)	117, 173, 192
AluI	AGCT	3 cut(s)	117, 173, 192
Alw21I	GWGCWC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	262
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	48
ArsI	GACNNNNNNTTYG	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	3 cut(s)	77, 268, 338
BclI	TGATCA	1 cut(s)	253
BfaI	CTAG	1 cut(s)	153
BglI	GCCNNNNNGGC	1 cut(s)	275
BglII	AGATCT	1 cut(s)	39
BisI	GCNGC	2 cut(s)	49, 222
BlsI	GCNGC	2 cut(s)	50, 223
BmcAI	AGTACT	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	267
BmsI	GCATC	1 cut(s)	277
Bpu10I	CCTNAGC	1 cut(s)	210
Bse1I	ACTGG	1 cut(s)	210
Bse21I	CCTNAGG	1 cut(s)	11
BseGI	GGATG	2 cut(s)	244, 292
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	60
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	269
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp1407I	TGTACA	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	39, 136, 253
BspACI	CCGC	2 cut(s)	16, 221
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	255
BsrGI	TGTACA	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	39, 136, 253
Bst4CI	ACNGT	2 cut(s)	58, 305
BstAUI	TGTACA	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	4 cut(s)	11, 113, 210, 263
BstF5I	GGATG	2 cut(s)	244, 292
BstKTI	GATC	3 cut(s)	42, 139, 256
BstMBI	GATC	3 cut(s)	39, 136, 253
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 275
BstV1I	GCAGC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
Bsu36I	CCTNAGG	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	244, 292
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	119
CaiI	CAGNNNCTG	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	267
Csp6I	GTAC	3 cut(s)	7, 59, 165
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	9 cut(s)	97, 117, 173, 192, 209, 215, 224, 269, 278
CviKI_1	RGCY	9 cut(s)	97, 117, 173, 192, 209, 215, 224, 269, 278
CviQI	GTAC	3 cut(s)	7, 59, 165
DdeI	CTNAG	4 cut(s)	11, 113, 210, 263
DpnI	GATC	3 cut(s)	41, 138, 255
DpnII	GATC	3 cut(s)	39, 136, 253
DraIII	CACNNNGTG	1 cut(s)	305
EciI	GGCGGA	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	192
Eco81I	CCTNAGG	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	194
FaeI	CATG	1 cut(s)	182
FaiI	YATR	8 cut(s)	45, 163, 180, 197, 199, 219, 334, 336
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	1 cut(s)	178
FauNDI	CATATG	2 cut(s)	197, 334
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	49, 222
FokI	GGATG	2 cut(s)	231, 299
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	2 cut(s)	49, 222
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	2 cut(s)	49, 222
HaeIII	GGCC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	182
HindIII	AAGCTT	1 cut(s)	115
HinfI	GANTC	1 cut(s)	233
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188III	TCNNGA	2 cut(s)	73, 237
Hpy8I	GTNNAC	1 cut(s)	167
HpyCH4III	ACNGT	2 cut(s)	58, 305
HpyCH4V	TGCA	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 275
HpyF3I	CTNAG	4 cut(s)	11, 113, 210, 263
Hsp92II	CATG	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	39, 136, 253
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	5 cut(s)	23, 37, 183, 191, 222
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	3 cut(s)	41, 138, 255
MboI	GATC	3 cut(s)	39, 136, 253
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	2 cut(s)	140, 292
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	4 cut(s)	6, 132, 258, 316
MslI	CAYNNNNRTG	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	221, 275
NdeI	CATATG	2 cut(s)	197, 334
NdeII	GATC	3 cut(s)	39, 136, 253
NlaIII	CATG	1 cut(s)	182
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	258
PkrI	GCNGC	2 cut(s)	50, 223
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	267
PstNI	CAGNNNCTG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	3 cut(s)	8, 60, 166
RsaNI	GTAC	3 cut(s)	7, 59, 165
RseI	CAYNNNNRTG	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	194
SatI	GCNGC	2 cut(s)	49, 222
Sau3AI	GATC	3 cut(s)	39, 136, 253
Sau96I	GGNCC	1 cut(s)	267
ScaI	AGTACT	1 cut(s)	60
SchI	GAGTC	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	4 cut(s)	12, 119, 175, 194
SfaNI	GCATC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	129
Sse9I	AATT	2 cut(s)	140, 292
SsiI	CCGC	2 cut(s)	16, 221
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	1 cut(s)	153
SstI	GAGCTC	1 cut(s)	194
TaaI	ACNGT	2 cut(s)	58, 305
TaqI	TCGA	1 cut(s)	26
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	2 cut(s)	140, 292
TatI	WGTACW	2 cut(s)	58, 164
TauI	GCSGC	1 cut(s)	224
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	1 cut(s)	48
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	1 cut(s)	233
TspRI	CASTG	1 cut(s)	267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XspI	CTAG	1 cut(s)	153
ZrmI	AGTACT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.