Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009207

Physical Location & Seq

Genomic Coordinates Forward (+)

47400553 .. 47401365

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1359000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGCAAGGACTTCATCACCAACAGCAGCAACTCACGGCGTTTCTCTCCGTCGCCATCCCCAAGGACGATTCCGCCCTCGCCTGGGTCGACTCCGCCCACAAGATCCGCTCCCGGGTCGACAAGATCGACGGCGAGAACCCCACGTGGAACGATCGGTTCCTCTTCAAGGTCCCGTCCGCATTTCTCTCAAGAGAGACCTCCCATGTCTCCATCCAGATCTACGCCGTCGGCTGCTTCAGCGATCACCTCGTCGGCATCGTCCGACTTCTGATCAACAACTTTCTCGACGTCGCGTCCAAGGTTCCGTTAGCTGCTTCAGCGAGACCTTCTGGAAGATTCCAAGGCGTGTTGAATGTGGCCGCGATGGTGATCGACGGCTCGTACCTGGCTCCGGCGGTGAGCGAGTTGTCTGCGGTCGGGTACCGCGACCTGATGGGAAATGGAGAAAGCTTCCGGTGCCGGCGACGCGACAGCATGAAGAGCAAATCGAGTGATTACCCCGGCAATTCGAAGGAAAACTCTTTCACTGAGTCGGCGGAGAACTCAGACGTCTGCGAGTCGGCGGCATCATCTCTGGCGACGCCATTACCGCCTCTGAAGGAAGTGAACATGATCACCGAATTGGCGGGAACAACAAGGCAGGTGTTGAAGGCTCGTCCAATGGACGGCTCGCGTTTCCTGTGTTGCTTGCTGACGCAGAGGAAGATGCAATACTGTCCGTCGGATGAGAACGCGGATGGAGCCCACAGCAGAGAAAGGAGGTGTCAGAGATCTGGCTGCCACAAGGGTGCTGAAGAACTTGACGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

271

Amino Acids

29.61

Weight (kDa)

7.6

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01200
fragaria_vesca	FvH4_7g15700
malus_domestica	MD01G1073700.v1.1 MD03G1187600.v1.1 MD05G1359000.v1.1 MD13G1272000.v1.1 MD15G1341600.v1.1
prunus_persica	Prupe.2G181800_v2.0.a1
pyrus_communis	pycom01g10290 pycom07g14100
rosa_chinensis	RchiOBHm_Chr1g0358431
rosa_laevigata	RLG00000027960
rosa_multiflora	Rmu_sc0004389.1_g000001 Rmu_sc0041976.1_g000001 Rmu_ssc0000348.1_g000006
rosa_roxburghii	Rroxscaffold_4G00297940
rosa_rugosa	Rorug01G0261900
rosa_samantha	Rh1AG276200 Rh1BG242800 Rh1CG259800 Rh1DG271200
rosa_wichuraiana	Rw1G024580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
AatII	GACGTC	2 cut(s)	291, 552
Acc36I	ACCTGC	1 cut(s)	631
Acc65I	GGTACC	1 cut(s)	420
AccB1I	GGYRCC	2 cut(s)	420, 456
AccBSI	CCGCTC	1 cut(s)	108
AccI	GTMKAC	2 cut(s)	87, 117
AccII	CGCG	6 cut(s)	293, 362, 426, 468, 673, 734
AclWI	GGATC	1 cut(s)	97
AcoI	YGGCCR	1 cut(s)	357
AcuI	CTGAAG	4 cut(s)	220, 300, 617, 813
AcvI	CACGTG	1 cut(s)	144
AcyI	GRCGYC	3 cut(s)	288, 549, 581
AfaI	GTAC	2 cut(s)	383, 422
AfiI	CCNNNNNNNGG	6 cut(s)	81, 82, 112, 166, 391, 665
AgsI	TTSAA	3 cut(s)	166, 352, 649
AhdI	GACNNNNNGTC	1 cut(s)	292
AjnI	CCWGG	2 cut(s)	80, 384
AleI	CACNNNNGTG	1 cut(s)	786
AluBI	AGCT	2 cut(s)	311, 450
AluI	AGCT	2 cut(s)	311, 450
Alw26I	GTCTC	3 cut(s)	188, 211, 316
AlwI	GGATC	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	4 cut(s)	25, 231, 311, 777
Asp718I	GGTACC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	3 cut(s)	112, 113, 501
AsuHPI	GGTGA	5 cut(s)	8, 236, 379, 409, 607
AsuII	TTCGAA	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	169
BanI	GGYRCC	2 cut(s)	420, 456
BanII	GRGCYC	1 cut(s)	745
BarI	GAAGNNNNNNTAC	2 cut(s)	695, 727
BbrPI	CACGTG	1 cut(s)	144
BbvI	GCAGC	4 cut(s)	37, 218, 298, 764
BccI	CCATC	5 cut(s)	62, 218, 358, 427, 731
BceAI	ACGGC	5 cut(s)	51, 145, 209, 391, 682
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	2 cut(s)	82, 386
BclI	TGATCA	2 cut(s)	270, 612
BcnI	CCSGG	3 cut(s)	112, 113, 501
BcoDI	GTCTC	3 cut(s)	188, 211, 316
BfuAI	ACCTGC	1 cut(s)	631
BglII	AGATCT	2 cut(s)	216, 770
BisI	GCNGC	6 cut(s)	26, 232, 312, 360, 564, 778
BlsI	GCNGC	6 cut(s)	27, 233, 313, 361, 565, 779
Bme1390I	CCNGG	5 cut(s)	82, 112, 113, 386, 501
Bme18I	GGWCC	1 cut(s)	169
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	7 cut(s)	158, 171, 303, 390, 422, 458, 742
BmrFI	CCNGG	5 cut(s)	82, 112, 113, 386, 501
BmsI	GCATC	3 cut(s)	264, 575, 696
Bpu14I	TTCGAA	1 cut(s)	509
BpuEI	CTTGAG	1 cut(s)	172
BpuMI	CCSGG	3 cut(s)	112, 113, 501
BsaAI	YACGTR	1 cut(s)	144
BsaBI	GATNNNNATC	1 cut(s)	368
BsaHI	GRCGYC	3 cut(s)	288, 549, 581
BsaI	GGTCTC	2 cut(s)	188, 316
BsaJI	CCNNGG	6 cut(s)	60, 81, 111, 297, 340, 499
BsaWI	WCCGGW	1 cut(s)	453
Bsc4I	CCNNNNNNNGG	6 cut(s)	81, 82, 112, 166, 391, 665
Bse118I	RCCGGY	1 cut(s)	459
Bse8I	GATNNNNATC	1 cut(s)	368
BseBI	CCWGG	2 cut(s)	82, 386
BseDI	CCNNGG	6 cut(s)	60, 81, 111, 297, 340, 499
BseGI	GGATG	4 cut(s)	54, 210, 730, 742
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	6 cut(s)	81, 82, 112, 166, 391, 665
BseMII	CTCAG	2 cut(s)	519, 558
BseXI	GCAGC	4 cut(s)	37, 218, 298, 764
Bsh1236I	CGCG	6 cut(s)	293, 362, 426, 468, 673, 734
Bsh1285I	CGRYCG	2 cut(s)	154, 417
BshFI	GGCC	1 cut(s)	359
BshNI	GGYRCC	2 cut(s)	420, 456
BsiEI	CGRYCG	2 cut(s)	154, 417
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	5 cut(s)	112, 392, 454, 460, 501
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	6 cut(s)	81, 82, 112, 166, 391, 665
BsmAI	GTCTC	3 cut(s)	188, 211, 316
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	359
Bso31I	GGTCTC	2 cut(s)	188, 316
BsoBI	CYCGRG	1 cut(s)	111
Bsp119I	TTCGAA	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	745
Bsp143I	GATC	9 cut(s)	102, 123, 151, 216, 241, 270, 369, 612, 770
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	2 cut(s)	520, 557
BspFNI	CGCG	6 cut(s)	293, 362, 426, 468, 673, 734
BspLI	GGNNCC	7 cut(s)	158, 171, 303, 390, 422, 458, 742
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	1 cut(s)	97
BspQI	GCTCTTC	1 cut(s)	473
BspT104I	TTCGAA	1 cut(s)	509
BspT107I	GGYRCC	2 cut(s)	420, 456
BspTNI	GGTCTC	2 cut(s)	188, 316
BsrBI	CCGCTC	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	459
BssAI	RCCGGY	1 cut(s)	459
BssECI	CCNNGG	6 cut(s)	60, 81, 111, 297, 340, 499
BssMI	GATC	9 cut(s)	102, 123, 151, 216, 241, 270, 369, 612, 770
BssNI	GRCGYC	3 cut(s)	288, 549, 581
BssT1I	CCWWGG	3 cut(s)	60, 297, 340
Bst2UI	CCWGG	2 cut(s)	82, 386
Bst4CI	ACNGT	2 cut(s)	716, 806
Bst6I	CTCTTC	2 cut(s)	167, 473
BstACI	GRCGYC	3 cut(s)	288, 549, 581
BstBAI	YACGTR	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	509
BstC8I	GCNNGC	3 cut(s)	461, 671, 689
BstDEI	CTNAG	2 cut(s)	528, 544
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstF5I	GGATG	4 cut(s)	54, 210, 730, 742
BstFNI	CGCG	6 cut(s)	293, 362, 426, 468, 673, 734
BstKTI	GATC	9 cut(s)	105, 126, 154, 219, 244, 273, 372, 615, 773
BstMAI	GTCTC	3 cut(s)	188, 211, 316
BstMBI	GATC	9 cut(s)	102, 123, 151, 216, 241, 270, 369, 612, 770
BstMCI	CGRYCG	2 cut(s)	154, 417
BstMWI	GCNNNNNNNGC	7 cut(s)	237, 317, 456, 465, 480, 589, 740
BstNI	CCWGG	2 cut(s)	82, 386
BstSCI	CCNGG	5 cut(s)	80, 110, 111, 384, 499
BstUI	CGCG	6 cut(s)	293, 362, 426, 468, 673, 734
BstV1I	GCAGC	4 cut(s)	37, 218, 298, 764
BstX2I	RGATCY	3 cut(s)	102, 216, 770
BstYI	RGATCY	3 cut(s)	102, 216, 770
BsuRI	GGCC	1 cut(s)	359
BtgZI	GCGATG	1 cut(s)	377
BtsCI	GGATG	4 cut(s)	54, 210, 730, 742
BtsIMutI	CAGTG	1 cut(s)	525
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	3 cut(s)	461, 671, 689
Cfr10I	RCCGGY	1 cut(s)	459
Cfr13I	GGNCC	1 cut(s)	169
Cfr9I	CCCGGG	1 cut(s)	111
CseI	GACGC	4 cut(s)	282, 474, 589, 703
Csp6I	GTAC	2 cut(s)	382, 421
CviAII	CATG	3 cut(s)	203, 475, 610
CviQI	GTAC	2 cut(s)	382, 421
DdeI	CTNAG	2 cut(s)	528, 544
DpnI	GATC	9 cut(s)	104, 125, 153, 218, 243, 272, 371, 614, 772
DpnII	GATC	9 cut(s)	102, 123, 151, 216, 241, 270, 369, 612, 770
DriI	GACNNNNNGTC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	167, 473
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	2 cut(s)	167, 473
EciI	GGCGGA	3 cut(s)	61, 82, 551
Eco130I	CCWWGG	3 cut(s)	60, 297, 340
Eco24I	GRGCYC	1 cut(s)	745
Eco31I	GGTCTC	2 cut(s)	188, 316
Eco47I	GGWCC	1 cut(s)	169
Eco57I	CTGAAG	4 cut(s)	220, 300, 617, 813
Eco72I	CACGTG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	111
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	2 cut(s)	80, 384
EcoT14I	CCWWGG	3 cut(s)	60, 297, 340
EcoT38I	GRGCYC	1 cut(s)	745
ErhI	CCWWGG	3 cut(s)	60, 297, 340
FaeI	CATG	3 cut(s)	206, 478, 613
FaiI	YATR	3 cut(s)	204, 476, 611
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	3 cut(s)	202, 474, 609
FauI	CCCGC	1 cut(s)	619
FbaI	TGATCA	2 cut(s)	270, 612
FblI	GTMKAC	2 cut(s)	87, 117
Fnu4HI	GCNGC	6 cut(s)	26, 232, 312, 360, 564, 778
FokI	GGATG	4 cut(s)	41, 197, 737, 749
FriOI	GRGCYC	1 cut(s)	745
Fsp4HI	GCNGC	6 cut(s)	26, 232, 312, 360, 564, 778
GluI	GCNGC	6 cut(s)	26, 232, 312, 360, 564, 778
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	5 cut(s)	112, 392, 454, 460, 501
HgaI	GACGC	4 cut(s)	282, 474, 589, 703
Hin1I	GRCGYC	3 cut(s)	288, 549, 581
Hin1II	CATG	3 cut(s)	206, 478, 613
HincII	GTYRAC	2 cut(s)	88, 118
HindII	GTYRAC	2 cut(s)	88, 118
HindIII	AAGCTT	1 cut(s)	448
HinfI	GANTC	5 cut(s)	68, 89, 336, 530, 557
HpaII	CCGG	5 cut(s)	112, 392, 454, 460, 501
HphI	GGTGA	5 cut(s)	8, 236, 379, 409, 607
Hpy166II	GTNNAC	3 cut(s)	88, 118, 607
Hpy188I	TCNGA	6 cut(s)	263, 270, 547, 597, 724, 768
Hpy188III	TCNNGA	4 cut(s)	189, 214, 284, 330
Hpy8I	GTNNAC	3 cut(s)	88, 118, 607
HpyAV	CCTTC	4 cut(s)	336, 505, 592, 643
HpyCH4III	ACNGT	2 cut(s)	716, 806
HpyCH4IV	ACGT	3 cut(s)	143, 288, 549
HpyCH4V	TGCA	2 cut(s)	4, 709
HpyF10VI	GCNNNNNNNGC	7 cut(s)	237, 317, 456, 465, 480, 589, 740
HpyF3I	CTNAG	2 cut(s)	528, 544
HpySE526I	ACGT	3 cut(s)	143, 288, 549
Hsp92I	GRCGYC	3 cut(s)	288, 549, 581
Hsp92II	CATG	3 cut(s)	206, 478, 613
KpnI	GGTACC	1 cut(s)	424
KroI	GCCGGC	1 cut(s)	459
KroNI	GCCGGC	1 cut(s)	461
Ksp22I	TGATCA	2 cut(s)	270, 612
Kzo9I	GATC	9 cut(s)	102, 123, 151, 216, 241, 270, 369, 612, 770
LguI	GCTCTTC	1 cut(s)	473
LmnI	GCTCC	3 cut(s)	113, 394, 740
Lsp1109I	GCAGC	4 cut(s)	37, 218, 298, 764
LweI	GCATC	3 cut(s)	264, 575, 696
MaeII	ACGT	3 cut(s)	143, 288, 549
MalI	GATC	9 cut(s)	104, 125, 153, 218, 243, 272, 371, 614, 772
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	9 cut(s)	102, 123, 151, 216, 241, 270, 369, 612, 770
MboII	GAAGA	5 cut(s)	154, 345, 490, 715, 806
MflI	RGATCY	3 cut(s)	102, 216, 770
MhlI	GDGCHC	1 cut(s)	745
MluCI	AATT	2 cut(s)	505, 620
MlyI	GAGTC	3 cut(s)	83, 539, 566
MmeI	TCCRAC	2 cut(s)	286, 702
MnlI	CCTC	7 cut(s)	86, 170, 208, 257, 603, 693, 753
MroNI	GCCGGC	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	786
MspI	CCGG	5 cut(s)	112, 392, 454, 460, 501
MspR9I	CCNGG	5 cut(s)	82, 112, 113, 386, 501
MvaI	CCWGG	2 cut(s)	82, 386
MvnI	CGCG	6 cut(s)	293, 362, 426, 468, 673, 734
MwoI	GCNNNNNNNGC	7 cut(s)	237, 317, 456, 465, 480, 589, 740
NaeI	GCCGGC	1 cut(s)	461
NciI	CCSGG	3 cut(s)	112, 113, 501
NdeII	GATC	9 cut(s)	102, 123, 151, 216, 241, 270, 369, 612, 770
NgoMIV	GCCGGC	1 cut(s)	459
NlaIII	CATG	3 cut(s)	206, 478, 613
NlaIV	GGNNCC	7 cut(s)	158, 171, 303, 390, 422, 458, 742
NspV	TTCGAA	1 cut(s)	509
OliI	CACNNNNGTG	1 cut(s)	786
PaqCI	CACCTGC	1 cut(s)	631
PciSI	GCTCTTC	1 cut(s)	473
PcsI	WCGNNNNNNNCGW	4 cut(s)	84, 123, 255, 423
PdiI	GCCGGC	1 cut(s)	461
PfeI	GAWTC	2 cut(s)	68, 336
PkrI	GCNGC	6 cut(s)	27, 233, 313, 361, 565, 779
Ple19I	CGATCG	1 cut(s)	154
PleI	GAGTC	3 cut(s)	83, 538, 565
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
PpsI	GAGTC	3 cut(s)	83, 538, 565
Ppu21I	YACGTR	1 cut(s)	144
PpuMI	RGGWCCY	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	169
Psp6I	CCWGG	2 cut(s)	80, 384
PspCI	CACGTG	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	80, 384
PspN4I	GGNNCC	7 cut(s)	158, 171, 303, 390, 422, 458, 742
PspPI	GGNCC	1 cut(s)	169
PspPPI	RGGWCCY	1 cut(s)	169
PsuI	RGATCY	3 cut(s)	102, 216, 770
PvuI	CGATCG	1 cut(s)	154
RsaI	GTAC	2 cut(s)	383, 422
RsaNI	GTAC	2 cut(s)	382, 421
RseI	CAYNNNNRTG	1 cut(s)	786
SalI	GTCGAC	2 cut(s)	86, 116
SapI	GCTCTTC	1 cut(s)	473
SatI	GCNGC	6 cut(s)	26, 232, 312, 360, 564, 778
Sau3AI	GATC	9 cut(s)	102, 123, 151, 216, 241, 270, 369, 612, 770
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	3 cut(s)	83, 539, 566
ScrFI	CCNGG	5 cut(s)	82, 112, 113, 386, 501
SduI	GDGCHC	1 cut(s)	745
SfaNI	GCATC	3 cut(s)	264, 575, 696
SfuI	TTCGAA	1 cut(s)	509
SinI	GGWCC	1 cut(s)	169
SmaI	CCCGGG	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	786
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	2 cut(s)	505, 620
StyD4I	CCNGG	5 cut(s)	80, 110, 111, 384, 499
StyI	CCWWGG	3 cut(s)	60, 297, 340
TaaI	ACNGT	2 cut(s)	716, 806
TaiI	ACGT	3 cut(s)	146, 291, 552
TaqI	TCGA	7 cut(s)	87, 117, 126, 285, 372, 488, 509
TasI	AATT	2 cut(s)	505, 620
TauI	GCSGC	2 cut(s)	362, 566
TfiI	GAWTC	2 cut(s)	68, 336
TscAI	CASTG	1 cut(s)	532
TseI	GCWGC	4 cut(s)	25, 231, 311, 777
TspDTI	ATGAA	1 cut(s)	491
TspGWI	ACGGA	3 cut(s)	37, 294, 708
TspMI	CCCGGG	1 cut(s)	111
TspRI	CASTG	1 cut(s)	532
VpaK11BI	GGWCC	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	164
XmaI	CCCGGG	1 cut(s)	111
XmiI	GTMKAC	2 cut(s)	87, 117
ZraI	GACGTC	2 cut(s)	289, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.