Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004389.1

Orthogroup ID

OG0009207

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 519

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004389.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

gtctcctcacaattcctcgttagggagacgtccggaatcacgattgagacccgcgactatctcgtcggcaccgtccggttgttcctcagcaactttcttaaactggaatccaagatattgtcgttcacggcactgcagattcagcagccttctagaagattccacggcatgttgaacatcgtcgcgttggtcaatcacgaatcagagtggtccaaggaagtcgacgatgtcttggcgatcgggtaccaagatctgatgggcaacagagagagcttccggcactggcgccttaaggacagcttcacgaggtcgaaggagaatttcttcaacagcgagtcgaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

114

Amino Acids

13.34

Weight (kDa)

8.3

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01200
fragaria_vesca	FvH4_7g15700
malus_domestica	MD01G1073700.v1.1 MD03G1187600.v1.1 MD05G1359000.v1.1 MD13G1272000.v1.1 MD15G1341600.v1.1
prunus_persica	Prupe.2G181800_v2.0.a1
pyrus_communis	pycom01g10290 pycom07g14100
rosa_chinensis	RchiOBHm_Chr1g0358431
rosa_laevigata	RLG00000027960
rosa_multiflora	Rmu_sc0004389.1_g000001 Rmu_sc0041976.1_g000001 Rmu_ssc0000348.1_g000006
rosa_roxburghii	Rroxscaffold_4G00297940
rosa_rugosa	Rorug01G0261900
rosa_samantha	Rh1AG276200 Rh1BG242800 Rh1CG259800 Rh1DG271200
rosa_wichuraiana	Rw1G024580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AatII	GACGTC	1 cut(s)	32
Acc65I	GGTACC	1 cut(s)	243
AccB1I	GGYRCC	3 cut(s)	68, 243, 285
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	2 cut(s)	54, 185
AccIII	TCCGGA	1 cut(s)	32
AciI	CCGC	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	319
AcyI	GRCGYC	2 cut(s)	29, 286
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	175, 328
AluBI	AGCT	2 cut(s)	273, 300
AluI	AGCT	2 cut(s)	273, 300
Alw26I	GTCTC	3 cut(s)	7, 20, 41
Aor13HI	TCCGGA	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	145
ApoI	RAATTY	1 cut(s)	319
Asp700I	GAANNNNTTC	1 cut(s)	323
Asp718I	GGTACC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	210
BanI	GGYRCC	3 cut(s)	68, 243, 285
BauI	CACGAG	1 cut(s)	304
BbvCI	CCTCAGC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	250
BceAI	ACGGC	2 cut(s)	144, 181
BcoDI	GTCTC	3 cut(s)	7, 20, 41
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	289
BfrI	CTTAAG	1 cut(s)	290
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	3 cut(s)	70, 245, 287
Bpu10I	CCTNAGC	1 cut(s)	86
BsaHI	GRCGYC	2 cut(s)	29, 286
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	163, 213
BsaWI	WCCGGW	2 cut(s)	32, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	2 cut(s)	108, 287
BseAI	TCCGGA	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	163, 213
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	2 cut(s)	108, 287
BseXI	GCAGC	1 cut(s)	157
Bsh1236I	CGCG	2 cut(s)	54, 185
Bsh1285I	CGRYCG	1 cut(s)	240
BshNI	GGYRCC	3 cut(s)	68, 243, 285
BsiEI	CGRYCG	1 cut(s)	240
BsiSI	CCGG	3 cut(s)	33, 76, 277
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	3 cut(s)	7, 20, 41
BsmBI	CGTCTC	1 cut(s)	20
Bso31I	GGTCTC	1 cut(s)	41
Bsp13I	TCCGGA	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	237, 250
BspACI	CCGC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	99
BspEI	TCCGGA	1 cut(s)	32
BspFNI	CGCG	2 cut(s)	54, 185
BspLI	GGNNCC	3 cut(s)	70, 245, 287
BspMAI	CTGCAG	1 cut(s)	138
BspT107I	GGYRCC	3 cut(s)	68, 243, 285
BspTI	CTTAAG	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	108, 287
BssECI	CCNNGG	2 cut(s)	163, 213
BssMI	GATC	2 cut(s)	237, 250
BssNI	GRCGYC	2 cut(s)	29, 286
BssSI	CACGAG	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	73
BstACI	GRCGYC	2 cut(s)	29, 286
BstAFI	CTTAAG	1 cut(s)	290
BstDEI	CTNAG	1 cut(s)	86
BstDSI	CCRYGG	1 cut(s)	163
BstFNI	CGCG	2 cut(s)	54, 185
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	2 cut(s)	240, 253
BstMAI	GTCTC	3 cut(s)	7, 20, 41
BstMBI	GATC	2 cut(s)	237, 250
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	134
BstUI	CGCG	2 cut(s)	54, 185
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BtgI	CCRYGG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	131, 280
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	3 cut(s)	148, 273, 300
CviKI_1	RGCY	3 cut(s)	148, 273, 300
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	86
DinI	GGCGCC	1 cut(s)	287
DpnI	GATC	2 cut(s)	239, 252
DpnII	GATC	2 cut(s)	237, 250
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	213
EgeI	GGCGCC	1 cut(s)	287
EheI	GGCGCC	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	1 cut(s)	172
FaiI	YATR	1 cut(s)	170
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	1 cut(s)	168
FauI	CCCGC	1 cut(s)	59
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	146
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	289
HapII	CCGG	3 cut(s)	33, 76, 277
HhaI	GCGC	1 cut(s)	288
Hin1I	GRCGYC	2 cut(s)	29, 286
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	6 cut(s)	36, 107, 139, 159, 200, 335
HpaII	CCGG	3 cut(s)	33, 76, 277
Hpy166II	GTNNAC	2 cut(s)	126, 223
Hpy188I	TCNGA	2 cut(s)	205, 255
Hpy188III	TCNNGA	5 cut(s)	33, 40, 153, 197, 304
Hpy8I	GTNNAC	2 cut(s)	126, 223
Hpy99I	CGWCG	3 cut(s)	68, 185, 227
HpyAV	CCTTC	2 cut(s)	159, 307
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	29
Hsp92I	GRCGYC	2 cut(s)	29, 286
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	286
KasI	GGCGCC	1 cut(s)	285
Kpn2I	TCCGGA	1 cut(s)	32
KpnI	GGTACC	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	237, 250
LpnPI	CCDG	5 cut(s)	46, 89, 89, 268, 290
Lsp1109I	GCAGC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	29
MalI	GATC	2 cut(s)	239, 252
MboI	GATC	2 cut(s)	237, 250
MboII	GAAGA	2 cut(s)	168, 316
MflI	RGATCY	1 cut(s)	250
MluCI	AATT	2 cut(s)	11, 319
Mly113I	GGCGCC	1 cut(s)	286
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	5 cut(s)	16, 26, 95, 300, 333
MroI	TCCGGA	1 cut(s)	32
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	2 cut(s)	99, 291
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	3 cut(s)	33, 76, 277
MvnI	CGCG	2 cut(s)	54, 185
MwoI	GCNNNNNNNGC	1 cut(s)	142
NarI	GGCGCC	1 cut(s)	286
NdeII	GATC	2 cut(s)	237, 250
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	3 cut(s)	70, 245, 287
NspI	RCATGY	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	5 cut(s)	36, 107, 139, 159, 200
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	147
Ple19I	CGATCG	1 cut(s)	240
PleI	GAGTC	1 cut(s)	343
PluTI	GGCGCC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	343
PspN4I	GGNNCC	3 cut(s)	70, 245, 287
PspPI	GGNCC	1 cut(s)	210
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	250
PsyI	GACNNNGTC	1 cut(s)	227
PvuI	CGATCG	1 cut(s)	240
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	99, 291
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	2 cut(s)	237, 250
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	344
SetI	ASST	5 cut(s)	32, 275, 302, 311, 344
SfcI	CTRYAG	1 cut(s)	134
SfoI	GGCGCC	1 cut(s)	287
SinI	GGWCC	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	11, 319
SsiI	CCGC	1 cut(s)	52
SspDI	GGCGCC	1 cut(s)	285
SspMI	CTAG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	3 cut(s)	222, 311, 338
TasI	AATT	2 cut(s)	11, 319
TfiI	GAWTC	5 cut(s)	36, 107, 139, 159, 200
Tru1I	TTAA	2 cut(s)	99, 291
Tru9I	TTAA	2 cut(s)	99, 291
TscAI	CASTG	2 cut(s)	138, 287
TseI	GCWGC	1 cut(s)	145
TspRI	CASTG	2 cut(s)	138, 287
Tth111I	GACNNNGTC	1 cut(s)	227
Vha464I	CTTAAG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	210
XapI	RAATTY	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	152
XceI	RCATGY	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	1 cut(s)	153
ZraI	GACGTC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.