Rmu_ssc0000348.1_g000006

Protein kinase C conserved region 2 (CalB)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000348.1
Physical Location & Seq
Reverse (-)
13501 .. 14304
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000348.1_g000006.1.cds

Sequence Viewer

Length: 804 bp
atgcacgtgctggagatcaacctgatctccggtcagggcttgaaagtcccgtccgggaagttacggcggatgaagacctacgcagtcgcctgggtcgactcgaaccacaagatccggacccgggtcgacaaagtcggagccgagaacccgacttggaacgaccggttcctcttcaaggtctcctccgaattcctcgccagggagacgtccgggatcacgatcgagatctacgccgtcggtgtcatccgcgaccatctcgtcggcaccgtccgattgatcctcagcaactttcttgacctggaatccaagatcccgtcgttcacggcgctgcagattcgccggccttctggaagattccacggcgtgttgaacgtcgccgcgttggtcaatcacgagtcggagtggtccaaggagctcgacgacgtctcggcgatcgggtaccaagatctgatgggcaagggagagagcttccggcgccggcgccggagggacagcttgacgaggtcgacggagaatttctccggcagcgagtcgagggagaattcttgcgcggagtcggtggagaactccgactgcggcgactcgttcaaatcggcgtctccgccgtataaatcgccgtctaaaccgacgtctccggcggcggagaagagagcgctgaaggaggcgaacggcgtgagggatctagcggccggaaccagggctctgaagacagctgtcccatcggacggctcgcgattcttgtgctgcttgctcacgacgcagaggaaggttcagtcatcgtcggataagaacgcagaaaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

267

Amino Acids

29.6

Weight (kDa)

9.58

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
AatII GACGTC 3 cut(s) 209, 426, 632
Acc65I GGTACC 1 cut(s) 438
AccB1I GGYRCC 4 cut(s) 263, 438, 474, 480
AccI GTMKAC 3 cut(s) 96, 126, 506
AccII CGCG 4 cut(s) 249, 380, 551, 733
AccIII TCCGGA 1 cut(s) 114
AciI CCGC 9 cut(s) 67, 247, 378, 551, 576, 602, 638, 641, 686
AclWI GGATC 5 cut(s) 106, 221, 271, 304, 687
AcoI YGGCCR 1 cut(s) 687
AcsI RAATTY 3 cut(s) 188, 514, 541
AcuI CTGAAG 2 cut(s) 677, 725
AcvI CACGTG 1 cut(s) 7
AcyI GRCGYC 6 cut(s) 206, 423, 475, 481, 596, 629
AdeI CACNNNGTG 1 cut(s) 364
AfaI GTAC 1 cut(s) 440
AfeI AGCGCT 1 cut(s) 654
AfiI CCNNNNNNNGG 5 cut(s) 121, 175, 199, 696, 725
AgeI ACCGGT 1 cut(s) 162
AgsI TTSAA 4 cut(s) 43, 175, 370, 589
AjnI CCWGG 4 cut(s) 89, 197, 297, 695
AluBI AGCT 4 cut(s) 415, 468, 495, 713
AluI AGCT 4 cut(s) 415, 468, 495, 713
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 5 cut(s) 184, 197, 430, 603, 636
AlwI GGATC 5 cut(s) 106, 221, 271, 304, 687
Ama87I CYCGRG 1 cut(s) 120
Aor13HI TCCGGA 1 cut(s) 114
Aor51HI AGCGCT 1 cut(s) 654
AoxI GGCC 2 cut(s) 341, 687
ApeKI GCWGC 3 cut(s) 328, 525, 744
ApoI RAATTY 3 cut(s) 188, 514, 541
AsiGI ACCGGT 1 cut(s) 162
Asp718I GGTACC 1 cut(s) 438
AspLEI GCGC 5 cut(s) 328, 477, 483, 551, 655
AspS9I GGNCC 2 cut(s) 117, 405
AsuC2I CCSGG 4 cut(s) 55, 121, 122, 211
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 2 cut(s) 117, 405
BanI GGYRCC 4 cut(s) 263, 438, 474, 480
BanII GRGCYC 2 cut(s) 417, 703
BauI CACGAG 1 cut(s) 392
BbrPI CACGTG 1 cut(s) 7
BbsI GAAGAC 2 cut(s) 80, 713
Bbv12I GWGCWC 1 cut(s) 417
BbvCI CCTCAGC 1 cut(s) 281
BbvI GCAGC 3 cut(s) 315, 537, 731
BccI CCATC 3 cut(s) 261, 445, 727
BceAI ACGGC 8 cut(s) 80, 218, 339, 376, 589, 601, 685, 742
BcgI CGANNNNNNTGC 2 cut(s) 723, 757
BciT130I CCWGG 4 cut(s) 91, 199, 299, 697
BcnI CCSGG 4 cut(s) 55, 121, 122, 211
BcoDI GTCTC 5 cut(s) 184, 197, 430, 603, 636
BfaI CTAG 1 cut(s) 683
BfmI CTRYAG 1 cut(s) 329
BfoI RGCGCY 4 cut(s) 329, 478, 484, 656
BglII AGATCT 2 cut(s) 225, 445
BisI GCNGC 7 cut(s) 329, 378, 526, 577, 639, 687, 745
BlsI GCNGC 7 cut(s) 330, 379, 527, 578, 640, 688, 746
Bme1390I CCNGG 8 cut(s) 55, 91, 121, 122, 199, 211, 299, 697
Bme18I GGWCC 2 cut(s) 117, 405
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 2 cut(s) 117, 405
BmiI GGNNCC 8 cut(s) 119, 139, 167, 265, 440, 476, 482, 694
BmrFI CCNGG 8 cut(s) 55, 91, 121, 122, 199, 211, 299, 697
BoxI GACNNNNGTC 2 cut(s) 122, 713
BpiI GAAGAC 2 cut(s) 80, 713
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BpmI CTGGAG 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 281
BpuMI CCSGG 4 cut(s) 55, 121, 122, 211
BsaAI YACGTR 1 cut(s) 7
BsaBI GATNNNNATC 2 cut(s) 218, 224
BsaHI GRCGYC 6 cut(s) 206, 423, 475, 481, 596, 629
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 6 cut(s) 90, 120, 198, 358, 408, 696
BsaWI WCCGGW 3 cut(s) 29, 114, 162
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 5 cut(s) 121, 175, 199, 696, 725
Bse118I RCCGGY 3 cut(s) 162, 339, 477
Bse8I GATNNNNATC 2 cut(s) 218, 224
BseAI TCCGGA 1 cut(s) 114
BseBI CCWGG 4 cut(s) 91, 199, 299, 697
BseDI CCNNGG 6 cut(s) 90, 120, 198, 358, 408, 696
BseGI GGATG 2 cut(s) 75, 243
BseJI GATNNNNATC 2 cut(s) 218, 224
BseLI CCNNNNNNNGG 5 cut(s) 121, 175, 199, 696, 725
BseMII CTCAG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 172
BseX3I CGGCCG 1 cut(s) 687
BseXI GCAGC 3 cut(s) 315, 537, 731
Bsh1236I CGCG 4 cut(s) 249, 380, 551, 733
Bsh1285I CGRYCG 4 cut(s) 163, 222, 435, 690
BshFI GGCC 2 cut(s) 343, 689
BshNI GGYRCC 4 cut(s) 263, 438, 474, 480
BshTI ACCGGT 1 cut(s) 162
BsiEI CGRYCG 4 cut(s) 163, 222, 435, 690
BsiHKAI GWGCWC 1 cut(s) 417
BsiHKCI CYCGRG 1 cut(s) 120
BslFI GGGAC 3 cut(s) 32, 503, 701
BslI CCNNNNNNNGG 5 cut(s) 121, 175, 199, 696, 725
BsmAI GTCTC 5 cut(s) 184, 197, 430, 603, 636
BsmBI CGTCTC 4 cut(s) 197, 430, 603, 636
BsmFI GGGAC 3 cut(s) 32, 503, 701
BsnI GGCC 2 cut(s) 343, 689
Bso31I GGTCTC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 417, 703
Bsp13I TCCGGA 1 cut(s) 114
Bsp68I TCGCGA 1 cut(s) 733
BspACI CCGC 9 cut(s) 67, 247, 378, 551, 576, 602, 638, 641, 686
BspANI GGCC 2 cut(s) 343, 689
BspCNI CTCAG 1 cut(s) 294
BspEI TCCGGA 1 cut(s) 114
BspFNI CGCG 4 cut(s) 249, 380, 551, 733
BspLI GGNNCC 8 cut(s) 119, 139, 167, 265, 440, 476, 482, 694
BspMAI CTGCAG 1 cut(s) 333
BspPI GGATC 5 cut(s) 106, 221, 271, 304, 687
BspT107I GGYRCC 4 cut(s) 263, 438, 474, 480
BspTNI GGTCTC 1 cut(s) 184
BsrFI RCCGGY 3 cut(s) 162, 339, 477
BssAI RCCGGY 3 cut(s) 162, 339, 477
BssECI CCNNGG 6 cut(s) 90, 120, 198, 358, 408, 696
BssNI GRCGYC 6 cut(s) 206, 423, 475, 481, 596, 629
BssSI CACGAG 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 408
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 4 cut(s) 91, 199, 299, 697
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 2 cut(s) 176, 641
BstACI GRCGYC 6 cut(s) 206, 423, 475, 481, 596, 629
BstBAI YACGTR 1 cut(s) 7
BstC8I GCNNGC 4 cut(s) 341, 479, 731, 749
BstDEI CTNAG 1 cut(s) 281
BstDSI CCRYGG 1 cut(s) 358
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 75, 243
BstFNI CGCG 4 cut(s) 249, 380, 551, 733
BstH2I RGCGCY 4 cut(s) 329, 478, 484, 656
BstHHI GCGC 5 cut(s) 328, 477, 483, 551, 655
BstMAI GTCTC 5 cut(s) 184, 197, 430, 603, 636
BstMCI CGRYCG 4 cut(s) 163, 222, 435, 690
BstMWI GCNNNNNNNGC 2 cut(s) 474, 757
BstNI CCWGG 4 cut(s) 91, 199, 299, 697
BstPAI GACNNNNGTC 2 cut(s) 122, 713
BstSCI CCNGG 8 cut(s) 53, 89, 119, 120, 197, 209, 297, 695
BstSFI CTRYAG 1 cut(s) 329
BstUI CGCG 4 cut(s) 249, 380, 551, 733
BstV1I GCAGC 3 cut(s) 315, 537, 731
BstV2I GAAGAC 2 cut(s) 80, 713
BstX2I RGATCY 5 cut(s) 111, 225, 309, 445, 679
BstYI RGATCY 5 cut(s) 111, 225, 309, 445, 679
BstZI CGGCCG 1 cut(s) 687
BsuRI GGCC 2 cut(s) 343, 689
BtgI CCRYGG 1 cut(s) 358
BtsCI GGATG 2 cut(s) 75, 243
BtuMI TCGCGA 1 cut(s) 733
Cac8I GCNNGC 4 cut(s) 341, 479, 731, 749
CfoI GCGC 5 cut(s) 328, 477, 483, 551, 655
Cfr10I RCCGGY 3 cut(s) 162, 339, 477
Cfr13I GGNCC 2 cut(s) 117, 405
Cfr9I CCCGGG 1 cut(s) 120
CseI GACGC 2 cut(s) 585, 766
Csp6I GTAC 1 cut(s) 439
CspAI ACCGGT 1 cut(s) 162
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 1 cut(s) 281
DinI GGCGCC 2 cut(s) 476, 482
DraIII CACNNNGTG 1 cut(s) 364
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
EaeI YGGCCR 1 cut(s) 687
EagI CGGCCG 1 cut(s) 687
Eam1104I CTCTTC 2 cut(s) 176, 641
EarI CTCTTC 2 cut(s) 176, 641
EciI GGCGGA 3 cut(s) 82, 591, 656
Ecl136II GAGCTC 1 cut(s) 415
EclXI CGGCCG 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 2 cut(s) 417, 703
Eco31I GGTCTC 1 cut(s) 184
Eco47I GGWCC 2 cut(s) 117, 405
Eco47III AGCGCT 1 cut(s) 654
Eco52I CGGCCG 1 cut(s) 687
Eco53kI GAGCTC 1 cut(s) 415
Eco57I CTGAAG 2 cut(s) 677, 725
Eco72I CACGTG 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 120
EcoICRI GAGCTC 1 cut(s) 415
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoRI GAATTC 2 cut(s) 188, 541
EcoRII CCWGG 4 cut(s) 89, 197, 297, 695
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 2 cut(s) 417, 703
EgeI GGCGCC 2 cut(s) 476, 482
EheI GGCGCC 2 cut(s) 476, 482
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 4 cut(s) 197, 430, 603, 636
FaiI YATR 1 cut(s) 609
FaqI GGGAC 3 cut(s) 32, 503, 701
FblI GTMKAC 3 cut(s) 96, 126, 506
Fnu4HI GCNGC 7 cut(s) 329, 378, 526, 577, 639, 687, 745
FokI GGATG 2 cut(s) 82, 230
FriOI GRGCYC 2 cut(s) 417, 703
Fsp4HI GCNGC 7 cut(s) 329, 378, 526, 577, 639, 687, 745
FspBI CTAG 1 cut(s) 683
GlaI GCGC 5 cut(s) 327, 476, 482, 550, 654
GluI GCNGC 7 cut(s) 329, 378, 526, 577, 639, 687, 745
GsuI CTGGAG 1 cut(s) 32
HaeII RGCGCY 4 cut(s) 329, 478, 484, 656
HaeIII GGCC 2 cut(s) 343, 689
HgaI GACGC 2 cut(s) 585, 766
HhaI GCGC 5 cut(s) 328, 477, 483, 551, 655
Hin1I GRCGYC 6 cut(s) 206, 423, 475, 481, 596, 629
Hin6I GCGC 5 cut(s) 326, 475, 481, 549, 653
HinP1I GCGC 5 cut(s) 326, 475, 481, 549, 653
HincII GTYRAC 3 cut(s) 97, 127, 507
HindII GTYRAC 3 cut(s) 97, 127, 507
HinfI GANTC 9 cut(s) 98, 302, 334, 354, 395, 530, 554, 581, 735
Hpy166II GTNNAC 4 cut(s) 97, 127, 321, 507
Hpy188I TCNGA 9 cut(s) 137, 187, 272, 400, 450, 571, 705, 724, 784
Hpy188III TCNNGA 8 cut(s) 115, 217, 223, 293, 348, 392, 732, 754
Hpy8I GTNNAC 4 cut(s) 97, 127, 321, 507
HpyAV CCTTC 3 cut(s) 354, 652, 760
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 5 cut(s) 6, 206, 372, 423, 629
HpyCH4V TGCA 2 cut(s) 4, 331
HpyF10VI GCNNNNNNNGC 2 cut(s) 474, 757
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 5 cut(s) 6, 206, 372, 423, 629
Hsp92I GRCGYC 6 cut(s) 206, 423, 475, 481, 596, 629
HspAI GCGC 5 cut(s) 326, 475, 481, 549, 653
KasI GGCGCC 2 cut(s) 474, 480
Kpn2I TCCGGA 1 cut(s) 114
KpnI GGTACC 1 cut(s) 442
KroI GCCGGC 2 cut(s) 339, 477
KroNI GCCGGC 2 cut(s) 341, 479
LmnI GCTCC 2 cut(s) 137, 412
Lsp1109I GCAGC 3 cut(s) 315, 537, 731
MaeI CTAG 1 cut(s) 683
MaeII ACGT 5 cut(s) 6, 206, 372, 423, 629
MaeIII GTNAC 1 cut(s) 60
MboII GAAGA 5 cut(s) 85, 163, 363, 658, 718
MflI RGATCY 5 cut(s) 111, 225, 309, 445, 679
MhlI GDGCHC 2 cut(s) 417, 703
MluCI AATT 3 cut(s) 188, 514, 541
Mly113I GGCGCC 2 cut(s) 475, 481
MlyI GAGTC 5 cut(s) 92, 404, 539, 563, 575
MmeI TCCRAC 4 cut(s) 115, 378, 594, 762
MreI CGCCGGCG 1 cut(s) 477
MroI TCCGGA 1 cut(s) 114
MroNI GCCGGC 2 cut(s) 339, 477
MspA1I CMGCKG 1 cut(s) 713
MspR9I CCNGG 8 cut(s) 55, 91, 121, 122, 199, 211, 299, 697
MvaI CCWGG 4 cut(s) 91, 199, 299, 697
MvnI CGCG 4 cut(s) 249, 380, 551, 733
MwoI GCNNNNNNNGC 2 cut(s) 474, 757
NaeI GCCGGC 2 cut(s) 341, 479
NarI GGCGCC 2 cut(s) 475, 481
NciI CCSGG 4 cut(s) 55, 121, 122, 211
NgoMIV GCCGGC 2 cut(s) 339, 477
NlaIV GGNNCC 8 cut(s) 119, 139, 167, 265, 440, 476, 482, 694
NmeAIII GCCGAG 2 cut(s) 166, 407
NruI TCGCGA 1 cut(s) 733
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 264
PdiI GCCGGC 2 cut(s) 341, 479
PfeI GAWTC 4 cut(s) 302, 334, 354, 735
PflFI GACNNNGTC 3 cut(s) 131, 422, 502
PfoI TCCNGGA 2 cut(s) 53, 209
PinAI ACCGGT 1 cut(s) 162
PkrI GCNGC 7 cut(s) 330, 379, 527, 578, 640, 688, 746
Ple19I CGATCG 2 cut(s) 222, 435
PleI GAGTC 5 cut(s) 92, 403, 538, 562, 575
PluTI GGCGCC 2 cut(s) 478, 484
PmaCI CACGTG 1 cut(s) 7
PmlI CACGTG 1 cut(s) 7
PpsI GAGTC 5 cut(s) 92, 403, 538, 562, 575
Ppu21I YACGTR 1 cut(s) 7
PshAI GACNNNNGTC 2 cut(s) 122, 713
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 4 cut(s) 89, 197, 297, 695
PspCI CACGTG 1 cut(s) 7
PspGI CCWGG 4 cut(s) 89, 197, 297, 695
PspN4I GGNNCC 8 cut(s) 119, 139, 167, 265, 440, 476, 482, 694
PspPI GGNCC 2 cut(s) 117, 405
PstI CTGCAG 1 cut(s) 333
PsuI RGATCY 5 cut(s) 111, 225, 309, 445, 679
PsyI GACNNNGTC 3 cut(s) 131, 422, 502
PvuI CGATCG 2 cut(s) 222, 435
PvuII CAGCTG 1 cut(s) 713
RruI TCGCGA 1 cut(s) 733
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SacI GAGCTC 1 cut(s) 417
SalI GTCGAC 3 cut(s) 95, 125, 505
SatI GCNGC 7 cut(s) 329, 378, 526, 577, 639, 687, 745
Sau96I GGNCC 2 cut(s) 117, 405
SchI GAGTC 5 cut(s) 92, 404, 539, 563, 575
ScrFI CCNGG 8 cut(s) 55, 91, 121, 122, 199, 211, 299, 697
SduI GDGCHC 2 cut(s) 417, 703
SfcI CTRYAG 1 cut(s) 329
SfoI GGCGCC 2 cut(s) 476, 482
SgrAI CRCCGGYG 1 cut(s) 477
SinI GGWCC 2 cut(s) 117, 405
SmaI CCCGGG 1 cut(s) 122
Sse9I AATT 3 cut(s) 188, 514, 541
SsiI CCGC 9 cut(s) 67, 247, 378, 551, 576, 602, 638, 641, 686
SspDI GGCGCC 2 cut(s) 474, 480
SspMI CTAG 1 cut(s) 683
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 8 cut(s) 53, 89, 119, 120, 197, 209, 297, 695
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 5 cut(s) 9, 209, 375, 426, 632
TaqI TCGA 7 cut(s) 96, 101, 126, 222, 417, 506, 533
TasI AATT 3 cut(s) 188, 514, 541
TauI GCSGC 4 cut(s) 380, 579, 641, 689
TfiI GAWTC 4 cut(s) 302, 334, 354, 735
TseI GCWGC 3 cut(s) 328, 525, 744
TspDTI ATGAA 1 cut(s) 86
TspGWI ACGGA 1 cut(s) 524
TspMI CCCGGG 1 cut(s) 120
Tth111I GACNNNGTC 3 cut(s) 131, 422, 502
VpaK11BI GGWCC 2 cut(s) 117, 405
XagI CCTNNNNNAGG 1 cut(s) 173
XapI RAATTY 3 cut(s) 188, 514, 541
XmaI CCCGGG 1 cut(s) 120
XmiI GTMKAC 3 cut(s) 96, 126, 506
XspI CTAG 1 cut(s) 683
ZraI GACGTC 3 cut(s) 207, 424, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.