MD05G1362700.v1.1

C2 and GRAM domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
47768756 .. 47772173
3418 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1362700.v1.1.491

Sequence Viewer

Length: 1899 bp
ATGAATTTTCTGCAGAGCACCATGATGAAAGGAATGATAGAAAATGGAGCTCGACAAGGTTTAAAGGACAGTTTTGACCACTTTGCTACTTTATTGTCTCAGAATGTTAAGCCAGTCGATTCAAAGGATCTTGGATCCAACAAGGATCAGGTTTTGGCATCACTGCAAGCTGAACCCCAGTCTGATTGGAAGCTGGCAGTACAATATTTTGCCAATTTCTCTGTGATCTCCACATTGTTTATTGGATTGTATATGCTTGTACACATCTGGCTTGCCCAACCCAGCACTATTCAAGGGCTGGAGTTTGTTGGGCTTGACTTGCCAGACTCAATTGGTGAATTCATCGTCTGTGGTGTCTTGGTTCTTCAAGGAGAAAGGGTTCTGGGGTTGATCTCACGTTTCATGCAGGCCAGAGCACAAAACGGCAGTGATCACGGAGTCAAAGCCCAAGGAGATGGTTGGTTGCTAACTGTTGCCTTGATTGAAGGAAGTAACATAGCAGCTGTCGATACAAGTGGGTTTTCTGATCCATACGTGGTGTTCACTTGCAATGGGAAAACTAGAACCAGCTCAATCAAGTTTCAGAAATGCAATCCTACATGGAATGAAATATTTGAGTTTGATGCAATGGATGAACCTCCTTCTGTGTTGGATGTGGAAGTTTATGATTTTGATGGACCTTTTGATGAAGCTACCTCACTGGGTCATGCTGAAATCAATTTTGTAAAAACTAATATATCAGATTTAGCTGACTTGTGGGTTCCTCTTCAAGGAAAGTTAGCTCAGGCATGCCAGTCAAAACTCCACCTGAGAATTTTCTTAAACAATACAAGAGGTGGCAATGTAGCAAATCATTTTTTGACTAAGATGGAGAAGGAGGTGGGAAAGAAGATAACTGTGCGGTCTCCTCAAACAAATTCAGCATTCCAAAAACTGTTTGGGCTTCCACCGGAGGAATTTCTCATCAACGACTTTACCTGTCACTTGAAACGAAAAATGCCCCTGCAGGGCCGCCTATTTCTTTCTGCAAGAATAATTGGATTCCATGCAAATTTATTTGGTCACAAGACAAAGTTCTTTTTCCTGTGGGAGGATATAGAGGATATTCAAGTTGTACCTCCAACTCTGTCATCTATGGGCAGTCCAATTGTAGTCATGACTCTGCGGCAGGGTAGAGGTATGGATGCAAGGCATGGTGCAAAGACACAAGATGAGGAAGGCAGGCTCAAGTTCCATTTCCAGTCCTTTGTATCTTTCAATGTAGCTAACAGGACAATTATGGCTCTTTGGAAGGCTAGGTCTTTGAGTCCTGAGCAGAAGGTGCAAATAGTTGAAGAAGAATCTGATGTCAAGATCCAAGCTGAAGAGAGCGGGTCTTTCTTGGGCCTTGATGATGTCAGCATGTCTGAGGTTTATTCTGCAGCTCATTCCGTTCCTACAAATTTCTTCATAGAGCTATTTGGCGGAGGTGAATTGGACCGTAGAGTTATGGAGAAAGCTGGTTGTCTTAACTACTCTTACACCCCATGGGAATCAGAGAAGGGTGATGTCTGTGTGAGGCAAATATATTACAGATTTGATAAACGTGTGTCTCAATATAGAGGAGAGGTGACTAGTACTCAGCAAAAATCCCGCCTCTCTGATAGAAATGGTTGGCTTGTACAAGAGGTCTCGACCCTCCATGCAGTACCGCTTGGCGACTATTTCAATCTTCACGTTCGATACCAAATCGAGGATTTGCCCTCAACACCAAAGGGATGCCAGGTAAAAGTATACTTTGGGGTTGAGTGGCTCAAAAGCACTCGGCATCAGAAAAGAATTACAAAAAATGTACTAAAGAATCTGCAAGATCGCCTGAAGGACACCTTCAGTGTAGTTGAGAAGGAATTCACAAGATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

633

Amino Acids

71.35

Weight (kDa)

6.34

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 155 - 256 8.5e-18 C2 domain
GRAM PF02893 308 - 416 9.1e-20 GRAM domain
VASt PF16016 477 - 613 1.1e-23 VAD1 Analog of StAR-related lipid transfer domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1371
AccI GTMKAC 1 cut(s) 1773
AciI CCGC 7 cut(s) 901, 1012, 1165, 1371, 1464, 1633, 1691
AclWI GGATC 6 cut(s) 129, 135, 142, 153, 521, 1348
AcsI RAATTY 8 cut(s) 4, 338, 813, 916, 956, 1051, 1441, 1886
AcuI CTGAAG 3 cut(s) 1383, 1852, 1877
AfaI GTAC 7 cut(s) 201, 261, 1116, 1618, 1662, 1689, 1833
AfiI CCNNNNNNNGG 4 cut(s) 770, 1007, 1090, 1732
AflIII ACRYGT 1 cut(s) 1585
AhlI ACTAGT 1 cut(s) 1613
AjnI CCWGG 1 cut(s) 1761
AloI GAACNNNNNNTCC 2 cut(s) 363, 395
Alw21I GWGCWC 3 cut(s) 20, 52, 418
Alw26I GTCTC 4 cut(s) 102, 909, 1596, 1675
AlwI GGATC 6 cut(s) 129, 135, 142, 153, 521, 1348
AoxI GGCC 3 cut(s) 408, 1009, 1384
ApeKI GCWGC 2 cut(s) 500, 1421
ApoI RAATTY 8 cut(s) 4, 338, 813, 916, 956, 1051, 1441, 1886
Asp700I GAANNNNTTC 2 cut(s) 378, 1886
AspS9I GGNCC 4 cut(s) 677, 1009, 1384, 1477
AsuHPI GGTGA 4 cut(s) 347, 1481, 1556, 1621
AvaII GGWCC 2 cut(s) 677, 1477
BamHI GGATCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 52
Bbv12I GWGCWC 3 cut(s) 20, 52, 418
BbvI GCAGC 2 cut(s) 512, 1433
BccI CCATC 3 cut(s) 449, 668, 862
BceAI ACGGC 1 cut(s) 439
BciT130I CCWGG 1 cut(s) 1763
BclI TGATCA 1 cut(s) 430
BcoDI GTCTC 4 cut(s) 102, 909, 1596, 1675
BcuI ACTAGT 1 cut(s) 1613
BfaI CTAG 3 cut(s) 561, 1296, 1614
BfmI CTRYAG 3 cut(s) 11, 1004, 1419
BisI GCNGC 4 cut(s) 501, 1012, 1166, 1422
BlsI GCNGC 4 cut(s) 502, 1013, 1167, 1423
BmcAI AGTACT 1 cut(s) 1618
Bme1390I CCNGG 1 cut(s) 1763
Bme18I GGWCC 2 cut(s) 677, 1477
BmgT120I GGNCC 4 cut(s) 677, 1009, 1384, 1477
BmiI GGNNCC 2 cut(s) 136, 762
BmrFI CCNGG 1 cut(s) 1763
BmrI ACTGGG 2 cut(s) 172, 710
BmsI GCATC 5 cut(s) 167, 613, 1174, 1748, 1816
BmuI ACTGGG 2 cut(s) 172, 710
BpmI CTGGAG 1 cut(s) 320
Bpu10I CCTNAGC 2 cut(s) 783, 1311
BpuEI CTTGAG 1 cut(s) 1211
BsaAI YACGTR 1 cut(s) 535
BsaI GGTCTC 2 cut(s) 909, 1675
BsaJI CCNNGG 2 cut(s) 448, 1526
BsaWI WCCGGW 1 cut(s) 949
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 4 cut(s) 770, 1007, 1090, 1732
Bse1I ACTGG 5 cut(s) 113, 178, 705, 793, 1240
Bse3DI GCAATG 3 cut(s) 556, 633, 847
BseBI CCWGG 1 cut(s) 1763
BseDI CCNNGG 2 cut(s) 448, 1526
BseGI GGATG 4 cut(s) 637, 658, 1189, 1763
BseLI CCNNNNNNNGG 4 cut(s) 770, 1007, 1090, 1732
BseMI GCAATG 3 cut(s) 556, 633, 847
BseMII CTCAG 6 cut(s) 113, 797, 800, 1302, 1398, 1634
BseNI ACTGG 5 cut(s) 113, 178, 705, 793, 1240
BseRI GAGGAG 2 cut(s) 897, 1617
BseXI GCAGC 2 cut(s) 512, 1433
BseYI CCCAGC 1 cut(s) 281
BshFI GGCC 3 cut(s) 410, 1011, 1386
BsiHKAI GWGCWC 3 cut(s) 20, 52, 418
BsiSI CCGG 1 cut(s) 950
BslI CCNNNNNNNGG 4 cut(s) 770, 1007, 1090, 1732
BsmAI GTCTC 4 cut(s) 102, 909, 1596, 1675
BsmI GAATGC 1 cut(s) 923
BsnI GGCC 3 cut(s) 410, 1011, 1386
Bso31I GGTCTC 2 cut(s) 909, 1675
Bsp1286I GDGCHC 3 cut(s) 20, 52, 418
Bsp1407I TGTACA 2 cut(s) 259, 1660
Bsp143I GATC 9 cut(s) 127, 134, 145, 225, 390, 430, 526, 1353, 1849
Bsp19I CCATGG 1 cut(s) 1526
BspACI CCGC 7 cut(s) 901, 1012, 1165, 1371, 1464, 1633, 1691
BspANI GGCC 3 cut(s) 410, 1011, 1386
BspCNI CTCAG 6 cut(s) 112, 796, 801, 1303, 1399, 1633
BspHI TCATGA 1 cut(s) 1155
BspLI GGNNCC 2 cut(s) 136, 762
BspMAI CTGCAG 3 cut(s) 15, 1008, 1423
BspPI GGATC 6 cut(s) 129, 135, 142, 153, 521, 1348
BspTNI GGTCTC 2 cut(s) 909, 1675
BsrBI CCGCTC 1 cut(s) 1371
BsrDI GCAATG 3 cut(s) 556, 633, 847
BsrGI TGTACA 2 cut(s) 259, 1660
BsrI ACTGG 5 cut(s) 113, 178, 705, 793, 1240
BssECI CCNNGG 2 cut(s) 448, 1526
BssMI GATC 9 cut(s) 127, 134, 145, 225, 390, 430, 526, 1353, 1849
BssNAI GTATAC 1 cut(s) 1774
BssT1I CCWWGG 2 cut(s) 448, 1526
Bst1107I GTATAC 1 cut(s) 1774
Bst2UI CCWGG 1 cut(s) 1763
Bst4CI ACNGT 5 cut(s) 71, 472, 898, 936, 1481
Bst6I CTCTTC 2 cut(s) 771, 1359
BstAPI GCANNNNNTGC 1 cut(s) 1321
BstAUI TGTACA 2 cut(s) 259, 1660
BstBAI YACGTR 1 cut(s) 535
BstC8I GCNNGC 6 cut(s) 168, 195, 273, 408, 790, 1223
BstDEI CTNAG 7 cut(s) 99, 783, 809, 864, 1311, 1407, 1620
BstDSI CCRYGG 1 cut(s) 1526
BstENI CCTNNNNNAGG 2 cut(s) 768, 1088
BstF5I GGATG 4 cut(s) 637, 658, 1189, 1763
BstKTI GATC 9 cut(s) 130, 137, 148, 228, 393, 433, 529, 1356, 1852
BstMAI GTCTC 4 cut(s) 102, 909, 1596, 1675
BstMBI GATC 9 cut(s) 127, 134, 145, 225, 390, 430, 526, 1353, 1849
BstMWI GCNNNNNNNGC 2 cut(s) 319, 1321
BstNI CCWGG 1 cut(s) 1763
BstNSI RCATGY 2 cut(s) 792, 1405
BstSCI CCNGG 1 cut(s) 1761
BstSFI CTRYAG 3 cut(s) 11, 1004, 1419
BstV1I GCAGC 2 cut(s) 512, 1433
BstX2I RGATCY 3 cut(s) 127, 134, 1353
BstXI CCANNNNNNTGG 1 cut(s) 455
BstYI RGATCY 3 cut(s) 127, 134, 1353
BstZ17I GTATAC 1 cut(s) 1774
BsuRI GGCC 3 cut(s) 410, 1011, 1386
BtgI CCRYGG 1 cut(s) 1526
BtsCI GGATG 4 cut(s) 637, 658, 1189, 1763
BtsI GCAGTG 2 cut(s) 161, 433
BtsIMutI CAGTG 4 cut(s) 161, 433, 698, 1876
Cac8I GCNNGC 6 cut(s) 168, 195, 273, 408, 790, 1223
CciI TCATGA 1 cut(s) 1155
Cfr13I GGNCC 4 cut(s) 677, 1009, 1384, 1477
Csp6I GTAC 7 cut(s) 200, 260, 1115, 1617, 1661, 1688, 1832
CviQI GTAC 7 cut(s) 200, 260, 1115, 1617, 1661, 1688, 1832
DdeI CTNAG 7 cut(s) 99, 783, 809, 864, 1311, 1407, 1620
DpnI GATC 9 cut(s) 129, 136, 147, 227, 392, 432, 528, 1355, 1851
DpnII GATC 9 cut(s) 127, 134, 145, 225, 390, 430, 526, 1353, 1849
DraI TTTAAA 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 771, 1359
EarI CTCTTC 2 cut(s) 771, 1359
EciI GGCGGA 1 cut(s) 1479
Ecl136II GAGCTC 1 cut(s) 50
Eco130I CCWWGG 2 cut(s) 448, 1526
Eco24I GRGCYC 1 cut(s) 52
Eco31I GGTCTC 2 cut(s) 909, 1675
Eco47I GGWCC 2 cut(s) 677, 1477
Eco53kI GAGCTC 1 cut(s) 50
Eco57I CTGAAG 3 cut(s) 1383, 1852, 1877
EcoICRI GAGCTC 1 cut(s) 50
EcoNI CCTNNNNNAGG 2 cut(s) 768, 1088
EcoRI GAATTC 2 cut(s) 338, 1886
EcoRII CCWGG 1 cut(s) 1761
EcoT14I CCWWGG 2 cut(s) 448, 1526
EcoT38I GRGCYC 1 cut(s) 52
ErhI CCWWGG 2 cut(s) 448, 1526
FalI AAGNNNNNCTT 2 cut(s) 1850, 1882
FauI CCCGC 2 cut(s) 1364, 1640
FbaI TGATCA 1 cut(s) 430
FblI GTMKAC 1 cut(s) 1773
Fnu4HI GCNGC 4 cut(s) 501, 1012, 1166, 1422
FokI GGATG 4 cut(s) 644, 665, 1196, 1770
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 4 cut(s) 501, 1012, 1166, 1422
FspBI CTAG 3 cut(s) 561, 1296, 1614
GluI GCNGC 4 cut(s) 501, 1012, 1166, 1422
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 3 cut(s) 410, 1011, 1386
HapII CCGG 1 cut(s) 950
HinfI GANTC 9 cut(s) 119, 326, 438, 1041, 1159, 1306, 1340, 1532, 1840
HpaII CCGG 1 cut(s) 950
HphI GGTGA 4 cut(s) 347, 1481, 1556, 1621
Hpy166II GTNNAC 3 cut(s) 262, 543, 1774
Hpy188III TCNNGA 4 cut(s) 1156, 1310, 1351, 1672
Hpy8I GTNNAC 3 cut(s) 262, 543, 1774
HpyCH4III ACNGT 5 cut(s) 71, 472, 898, 936, 1481
HpyCH4IV ACGT 4 cut(s) 397, 534, 1585, 1716
HpyF10VI GCNNNNNNNGC 2 cut(s) 319, 1321
HpyF3I CTNAG 7 cut(s) 99, 783, 809, 864, 1311, 1407, 1620
HpySE526I ACGT 4 cut(s) 397, 534, 1585, 1716
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 9 cut(s) 127, 134, 145, 225, 390, 430, 526, 1353, 1849
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 2 cut(s) 512, 1433
LweI GCATC 5 cut(s) 167, 613, 1174, 1748, 1816
MaeI CTAG 3 cut(s) 561, 1296, 1614
MaeII ACGT 4 cut(s) 397, 534, 1585, 1716
MaeIII GTNAC 4 cut(s) 491, 980, 1061, 1609
MalI GATC 9 cut(s) 129, 136, 147, 227, 392, 432, 528, 1355, 1851
MbiI CCGCTC 1 cut(s) 1371
MboI GATC 9 cut(s) 127, 134, 145, 225, 390, 430, 526, 1353, 1849
MboII GAAGA 8 cut(s) 356, 758, 901, 1346, 1349, 1376, 1438, 1703
MfeI CAATTG 2 cut(s) 330, 1146
MflI RGATCY 3 cut(s) 127, 134, 1353
MhlI GDGCHC 3 cut(s) 20, 52, 418
MlyI GAGTC 4 cut(s) 320, 447, 1153, 1315
MmeI TCCRAC 3 cut(s) 162, 630, 1145
MroXI GAANNNNTTC 2 cut(s) 378, 1886
MseI TTAA 4 cut(s) 62, 108, 821, 1509
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 1 cut(s) 950
MspR9I CCNGG 1 cut(s) 1763
MunI CAATTG 2 cut(s) 330, 1146
Mva1269I GAATGC 1 cut(s) 923
MvaI CCWGG 1 cut(s) 1763
MwoI GCNNNNNNNGC 2 cut(s) 319, 1321
NcoI CCATGG 1 cut(s) 1526
NdeII GATC 9 cut(s) 127, 134, 145, 225, 390, 430, 526, 1353, 1849
NlaIV GGNNCC 2 cut(s) 136, 762
NmeAIII GCCGAG 1 cut(s) 1783
NmuCI GTSAC 3 cut(s) 980, 1061, 1609
NspI RCATGY 2 cut(s) 792, 1405
PaeI GCATGC 1 cut(s) 792
PagI TCATGA 1 cut(s) 1155
PctI GAATGC 1 cut(s) 923
PdmI GAANNNNTTC 2 cut(s) 378, 1886
PfeI GAWTC 5 cut(s) 119, 1041, 1340, 1532, 1840
PkrI GCNGC 4 cut(s) 502, 1013, 1167, 1423
PleI GAGTC 4 cut(s) 320, 446, 1153, 1314
PpsI GAGTC 4 cut(s) 320, 446, 1153, 1314
Ppu21I YACGTR 1 cut(s) 535
Psp124BI GAGCTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 1761
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 1 cut(s) 1761
PspN4I GGNNCC 2 cut(s) 136, 762
PspPI GGNCC 4 cut(s) 677, 1009, 1384, 1477
PstI CTGCAG 3 cut(s) 15, 1008, 1423
PsuI RGATCY 3 cut(s) 127, 134, 1353
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 7 cut(s) 201, 261, 1116, 1618, 1662, 1689, 1833
RsaNI GTAC 7 cut(s) 200, 260, 1115, 1617, 1661, 1688, 1832
RseI CAYNNNNRTG 1 cut(s) 23
SacI GAGCTC 1 cut(s) 52
SaqAI TTAA 4 cut(s) 62, 108, 821, 1509
SatI GCNGC 4 cut(s) 501, 1012, 1166, 1422
Sau3AI GATC 9 cut(s) 127, 134, 145, 225, 390, 430, 526, 1353, 1849
Sau96I GGNCC 4 cut(s) 677, 1009, 1384, 1477
SbfI CCTGCAGG 1 cut(s) 1008
ScaI AGTACT 1 cut(s) 1618
SchI GAGTC 4 cut(s) 320, 447, 1153, 1315
ScrFI CCNGG 1 cut(s) 1763
SdaI CCTGCAGG 1 cut(s) 1008
SduI GDGCHC 3 cut(s) 20, 52, 418
SfaNI GCATC 5 cut(s) 167, 613, 1174, 1748, 1816
SfcI CTRYAG 3 cut(s) 11, 1004, 1419
SinI GGWCC 2 cut(s) 677, 1477
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 1226
SmoI CTYRAG 1 cut(s) 1226
SpeI ACTAGT 1 cut(s) 1613
SphI GCATGC 1 cut(s) 792
Sse8387I CCTGCAGG 1 cut(s) 1008
SsiI CCGC 7 cut(s) 901, 1012, 1165, 1371, 1464, 1633, 1691
SspI AATATT 2 cut(s) 206, 612
SspMI CTAG 3 cut(s) 561, 1296, 1614
SstI GAGCTC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 1761
StyI CCWWGG 2 cut(s) 448, 1526
TaaI ACNGT 5 cut(s) 71, 472, 898, 936, 1481
TaiI ACGT 4 cut(s) 400, 537, 1588, 1719
TaqI TCGA 6 cut(s) 52, 117, 507, 1673, 1720, 1731
TatI WGTACW 5 cut(s) 199, 259, 1616, 1660, 1831
TauI GCSGC 2 cut(s) 1014, 1168
TfiI GAWTC 5 cut(s) 119, 1041, 1340, 1532, 1840
Tru1I TTAA 4 cut(s) 62, 108, 821, 1509
Tru9I TTAA 4 cut(s) 62, 108, 821, 1509
TscAI CASTG 4 cut(s) 168, 433, 705, 1876
TseFI GTSAC 3 cut(s) 980, 1061, 1609
TseI GCWGC 2 cut(s) 500, 1421
Tsp45I GTSAC 3 cut(s) 980, 1061, 1609
TspDTI ATGAA 8 cut(s) 17, 41, 331, 391, 621, 648, 702, 1438
TspGWI ACGGA 2 cut(s) 450, 1420
TspRI CASTG 4 cut(s) 168, 433, 705, 1876
VpaK11BI GGWCC 2 cut(s) 677, 1477
XagI CCTNNNNNAGG 2 cut(s) 768, 1088
XapI RAATTY 8 cut(s) 4, 338, 813, 916, 956, 1051, 1441, 1886
XceI RCATGY 2 cut(s) 792, 1405
XcmI CCANNNNNNNNNTGG 1 cut(s) 935
XmiI GTMKAC 1 cut(s) 1773
XmnI GAANNNNTTC 2 cut(s) 378, 1886
XspI CTAG 3 cut(s) 561, 1296, 1614
ZrmI AGTACT 1 cut(s) 1618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.