Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Reverse (-)

55381357 .. 55386232

Gene Structure 4876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0383100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGAAGAGGGAAGGTGGAGCTGAAGAGGATCGAGAACAAGATAAATCGACAAGTAACATTCGCAAAGAGAAGGAACGGGCTGCTGAAGAAGGCGTACGAGCTCTCCCTTCTCTGTGATGCAGAGGTTGCTCTCATCATCTTCTCTAGCCGTGGCAAGCTCTATGAGTTCTGCAGCGGGCCCAGCATGGAGAAGACACTTGAGAAATATCAAAGATACACTTATGCAGCACTGGAAGCGGGTCAACCTGCTCAGAATACACAGCAGAGCAGATATGAAGAATATGAGAACCTTAAAGTGAAAGTTGAGGTCCTACAACGTACGCAGAGACGCTTTCTTGGGGAAGATTTGGAAAATTTAGACACAGAGGAGCTTGGGCAGCTTGAGAATGAACTAGATTTGTCGTTGAAGCGAGTTAGGTCAAGACAGGGCCAACACATACTTGAACAGCTTTCAGATCTTCAGAGGAAGGAAAAGATGCTGCTAGAAGCAAACGATGAATTGAGAATTAAGTTGGAAGAAAGTAATGAAGGCCTTCAACGTTCCTGGAAAGCAAAGCAGCCAAGTATTCCAAATGGCCACCCGTCTACTGCTCAATCAGATCAAGTTTTATTTGAGCGTTTACAATGCAACAACATTACACTGCAGATAGGCCACAGTCGTGAGGTAACAAGTGAGGTAAATGTAGCAACCTCAACCCAAACTCGTAGCGGATTTGTCCCAGAATGGATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

245

Amino Acids

28.35

Weight (kDa)

7.68

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.6e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	85 - 172	1e-23	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	587
AciI	CCGC	3 cut(s)	177, 239, 711
AclI	AACGTT	1 cut(s)	541
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	3 cut(s)	44, 107, 446
AfaI	GTAC	2 cut(s)	98, 322
AgsI	TTSAA	3 cut(s)	409, 446, 539
AjnI	CCWGG	1 cut(s)	545
AleI	CACNNNNGTG	1 cut(s)	660
AluBI	AGCT	6 cut(s)	22, 103, 160, 373, 382, 451
AluI	AGCT	6 cut(s)	22, 103, 160, 373, 382, 451
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	5 cut(s)	179, 430, 532, 577, 652
ApaI	GGGCCC	1 cut(s)	183
ApeKI	GCWGC	6 cut(s)	82, 174, 227, 379, 481, 559
ApoI	RAATTY	1 cut(s)	355
Asp700I	GAANNNNTTC	1 cut(s)	534
AspS9I	GGNCC	4 cut(s)	179, 180, 310, 430
AvaII	GGWCC	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	579
BanII	GRGCYC	2 cut(s)	105, 183
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	6 cut(s)	69, 186, 239, 391, 468, 571
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	3 cut(s)	147, 395, 485
BfmI	CTRYAG	2 cut(s)	172, 644
BfuAI	ACCTGC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	6 cut(s)	83, 175, 228, 380, 482, 560
BlsI	GCNGC	6 cut(s)	84, 176, 229, 381, 483, 561
Bme1390I	CCNGG	1 cut(s)	547
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	4 cut(s)	179, 180, 310, 430
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	547
BmsI	GCATC	3 cut(s)	109, 468, 720
BpiI	GAAGAC	1 cut(s)	200
BpuEI	CTTGAG	2 cut(s)	221, 404
BsaJI	CCNNGG	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse1I	ACTGG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	735
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	237
BseRI	GAGGAG	1 cut(s)	383
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	6 cut(s)	69, 186, 239, 391, 468, 571
BseYI	CCCAGC	1 cut(s)	182
BshFI	GGCC	5 cut(s)	181, 432, 534, 579, 654
BsiHKAI	GWGCWC	1 cut(s)	105
BsiWI	CGTACG	2 cut(s)	96, 320
BslFI	GGGAC	1 cut(s)	704
BsmAI	GTCTC	1 cut(s)	322
BsmBI	CGTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	704
BsnI	GGCC	5 cut(s)	181, 432, 534, 579, 654
Bsp120I	GGGCCC	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	105, 183
Bsp143I	GATC	3 cut(s)	30, 457, 601
BspACI	CCGC	3 cut(s)	177, 239, 711
BspANI	GGCC	5 cut(s)	181, 432, 534, 579, 654
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	181
BspMAI	CTGCAG	2 cut(s)	176, 648
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	3 cut(s)	30, 457, 601
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	158, 179
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	735
BstKTI	GATC	3 cut(s)	33, 460, 604
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	3 cut(s)	30, 457, 601
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 183, 236, 379
BstNI	CCWGG	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	545
BstSFI	CTRYAG	2 cut(s)	172, 644
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	6 cut(s)	69, 186, 239, 391, 468, 571
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	5 cut(s)	181, 432, 534, 579, 654
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	735
BtsI	GCAGTG	1 cut(s)	641
BtsIMutI	CAGTG	2 cut(s)	230, 641
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	158, 179
Cfr13I	GGNCC	4 cut(s)	179, 180, 310, 430
CseI	GACGC	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	97, 321
CviAII	CATG	1 cut(s)	187
CviQI	GTAC	2 cut(s)	97, 321
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	32, 459, 603
DpnII	GATC	3 cut(s)	30, 457, 601
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	534
Eco24I	GRGCYC	2 cut(s)	105, 183
Eco47I	GGWCC	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	3 cut(s)	44, 107, 446
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	545
EcoT38I	GRGCYC	2 cut(s)	105, 183
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	1 cut(s)	190
FaiI	YATR	6 cut(s)	165, 188, 225, 276, 285, 440
FalI	AAGNNNNNCTT	2 cut(s)	205, 237
FaqI	GGGAC	1 cut(s)	704
FatI	CATG	1 cut(s)	186
FauI	CCCGC	2 cut(s)	170, 232
FblI	GTMKAC	1 cut(s)	587
Fnu4HI	GCNGC	6 cut(s)	83, 175, 228, 380, 482, 560
FriOI	GRGCYC	2 cut(s)	105, 183
Fsp4HI	GCNGC	6 cut(s)	83, 175, 228, 380, 482, 560
FspBI	CTAG	3 cut(s)	147, 395, 485
GluI	GCNGC	6 cut(s)	83, 175, 228, 380, 482, 560
GsaI	CCCAGC	1 cut(s)	186
HaeIII	GGCC	5 cut(s)	181, 432, 534, 579, 654
HgaI	GACGC	1 cut(s)	339
Hin1II	CATG	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
Hpy166II	GTNNAC	3 cut(s)	245, 588, 623
Hpy188I	TCNGA	4 cut(s)	255, 457, 465, 601
Hpy188III	TCNNGA	3 cut(s)	34, 423, 662
Hpy8I	GTNNAC	3 cut(s)	245, 588, 623
HpyAV	CCTTC	7 cut(s)	7, 66, 85, 119, 463, 524, 545
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4IV	ACGT	2 cut(s)	319, 541
HpyCH4V	TGCA	5 cut(s)	122, 174, 227, 630, 646
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 183, 236, 379
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	2 cut(s)	319, 541
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	30, 457, 601
LmnI	GCTCC	2 cut(s)	19, 370
LpnPI	CCDG	6 cut(s)	196, 218, 261, 413, 532, 559
Lsp1109I	GCAGC	6 cut(s)	69, 186, 239, 391, 468, 571
LweI	GCATC	3 cut(s)	109, 468, 720
MaeI	CTAG	3 cut(s)	147, 395, 485
MaeII	ACGT	2 cut(s)	319, 541
MaeIII	GTNAC	2 cut(s)	55, 667
MalI	GATC	3 cut(s)	32, 459, 603
MboI	GATC	3 cut(s)	30, 457, 601
MboII	GAAGA	9 cut(s)	18, 37, 100, 133, 205, 290, 356, 452, 530
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	105, 183
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	3 cut(s)	355, 500, 507
MluNI	TGGCCA	1 cut(s)	579
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	8 cut(s)	21, 118, 301, 361, 459, 658, 670, 703
Mox20I	TGGCCA	1 cut(s)	579
MroXI	GAANNNNTTC	1 cut(s)	534
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	2 cut(s)	294, 510
MslI	CAYNNNNRTG	1 cut(s)	660
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	547
MwoI	GCNNNNNNNGC	4 cut(s)	128, 183, 236, 379
NdeII	GATC	3 cut(s)	30, 457, 601
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	181
OliI	CACNNNNGTG	1 cut(s)	660
PceI	AGGCCT	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	534
Pfl23II	CGTACG	2 cut(s)	96, 320
PfoI	TCCNGGA	1 cut(s)	545
PkrI	GCNGC	6 cut(s)	84, 176, 229, 381, 483, 561
PpuMI	RGGWCCY	1 cut(s)	310
Psp124BI	GAGCTC	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	541
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	545
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	545
PspLI	CGTACG	2 cut(s)	96, 320
PspN4I	GGNNCC	1 cut(s)	181
PspOMI	GGGCCC	1 cut(s)	179
PspPI	GGNCC	4 cut(s)	179, 180, 310, 430
PspPPI	RGGWCCY	1 cut(s)	310
PstI	CTGCAG	2 cut(s)	176, 648
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	2 cut(s)	98, 322
RsaNI	GTAC	2 cut(s)	97, 321
RseI	CAYNNNNRTG	1 cut(s)	660
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	294, 510
SatI	GCNGC	6 cut(s)	83, 175, 228, 380, 482, 560
Sau3AI	GATC	3 cut(s)	30, 457, 601
Sau96I	GGNCC	4 cut(s)	179, 180, 310, 430
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	2 cut(s)	105, 183
SfaNI	GCATC	3 cut(s)	109, 468, 720
SfcI	CTRYAG	2 cut(s)	172, 644
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	660
SmlI	CTYRAG	2 cut(s)	200, 383
SmoI	CTYRAG	2 cut(s)	200, 383
Sse9I	AATT	3 cut(s)	355, 500, 507
SseBI	AGGCCT	1 cut(s)	534
SsiI	CCGC	3 cut(s)	177, 239, 711
SspMI	CTAG	3 cut(s)	147, 395, 485
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	545
TaaI	ACNGT	1 cut(s)	659
TaiI	ACGT	2 cut(s)	322, 544
TaqI	TCGA	2 cut(s)	33, 49
TasI	AATT	3 cut(s)	355, 500, 507
Tru1I	TTAA	2 cut(s)	294, 510
Tru9I	TTAA	2 cut(s)	294, 510
TscAI	CASTG	2 cut(s)	237, 648
TseI	GCWGC	6 cut(s)	82, 174, 227, 379, 481, 559
TspDTI	ATGAA	4 cut(s)	291, 405, 513, 543
TspRI	CASTG	2 cut(s)	237, 648
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	587
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	3 cut(s)	147, 395, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.