Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Reverse (-)

9648467 .. 9650912

Gene Structure 2446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCGGATCTGAAATCAACCTTCCTCGACGTTTACTCTGTTCTCAAGTCTGATCTGCTTCAAGATCCTTCCTTTGAATTCACCCACGAATCTCGTCAATGGCTTGAACGGATGCTTGACTACAATGTACGCGGAGGGAAGCTAAATCGTGGTCTCTCTGTGGTTGATAGCTACAAGCTGTTGAAGCAAGGTCAAGACTTGACGGAGAAAGAGACTTTCCTCTCATGTGCTCTTGGTTGGTGCATTGAATGGCTTCAAGCTTATTTCCTTGTGCTTGATGACATCATGGACAACTCTGTCACACGCCGTGGCCAGCCTTGTTGGTTTAGAAAGCCAAAGGTTGGTATGATTGCCATTAACGATGGGATTCTACTTCGCAATCATATCCACAGGATTCTCAAAAAGCACTTCAGGGAAATGCCTTACTATGTTGACCTCGTTGATTTGTTTAACGAGGTAGAGTTTCAAACAGCTTGCGGCCAGATGATTGATTTGATCACCACCTTTGATGGAGAAAAAGATTTGTCTAAGTACTCCTTGCAAATCCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCTGTTGCTTGCGCATTGCTCATGGCGGGAGAAAATTTGGAAAACCATACTGATGTGAAGACTGTTCTTGTTGACATGGGAATTTACTTTCAAGTACAGGATGATTATCTGGACTGTTTTGCTGATCCTGAGACACTTGGCAAGATAGGGACAGACATAGAAGATTTCAAATGCTCCTGGTTGGTAGTTAAGGCATTGGAACGCTGCAGTGAAGAACAAACTAAGATACTATACGAGAACTATGGTAAAGCCGAACCATCAAACGTTGCTAAGGTGAAAGCTCTCTACAAAGAGCTTGATCTCGAGGGAGCGTTCATGGAATATGAGAAGGAAAGCTATGAGAAGCTGACAAAGTTGATCGAAGCTCACCAGAGTAAAGCAATTCAAGCAGTGCTAAAATCTTTCTTGGCTAAGATCTACAAGAGGCAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

342

Amino Acids

39.83

Weight (kDa)

5.53

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	33 - 297	4.8e-82	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
Acc16I	TGCGCA	1 cut(s)	607
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccII	CGCG	1 cut(s)	132
AciI	CCGC	4 cut(s)	5, 132, 477, 620
AclI	AACGTT	1 cut(s)	858
AclWI	GGATC	3 cut(s)	15, 59, 713
AcoI	YGGCCR	2 cut(s)	310, 478
AcsI	RAATTY	3 cut(s)	77, 628, 675
AcuI	CTGAAG	1 cut(s)	394
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	4 cut(s)	129, 533, 566, 690
AfiI	CCNNNNNNNGG	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	770
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	3 cut(s)	158, 206, 719
AlwI	GGATC	3 cut(s)	15, 59, 713
Ama87I	CYCGRG	1 cut(s)	896
AoxI	GGCC	2 cut(s)	310, 478
ApeKI	GCWGC	1 cut(s)	798
ApoI	RAATTY	3 cut(s)	77, 628, 675
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	608
AsuHPI	GGTGA	4 cut(s)	73, 490, 880, 953
AvaI	CYCGRG	1 cut(s)	896
BalI	TGGCCA	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	659
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	785
BccI	CCATC	4 cut(s)	356, 503, 555, 859
BceAI	ACGGC	1 cut(s)	291
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	1 cut(s)	772
BclI	TGATCA	1 cut(s)	495
BcoDI	GTCTC	3 cut(s)	158, 206, 719
BfmI	CTRYAG	1 cut(s)	799
BglII	AGATCT	1 cut(s)	1008
BisI	GCNGC	2 cut(s)	478, 799
BlsI	GCNGC	2 cut(s)	479, 800
BmcAI	AGTACT	1 cut(s)	533
Bme1390I	CCNGG	1 cut(s)	772
BmeT110I	CYCGRG	1 cut(s)	896
BmrFI	CCNGG	1 cut(s)	772
BmsI	GCATC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	659
Bpu10I	CCTNAGC	1 cut(s)	864
BpuEI	CTTGAG	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	699
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	608
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	772
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	2 cut(s)	117, 700
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	1 cut(s)	608
BseMII	CTCAG	1 cut(s)	714
BseXI	GCAGC	1 cut(s)	785
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	312, 480
BsiHKAI	GWGCWC	1 cut(s)	232
BsiHKCI	CYCGRG	1 cut(s)	896
BslFI	GGGAC	1 cut(s)	757
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	3 cut(s)	158, 206, 719
BsmFI	GGGAC	1 cut(s)	757
BsnI	GGCC	2 cut(s)	312, 480
Bso31I	GGTCTC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	896
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	8 cut(s)	7, 52, 64, 495, 718, 892, 951, 1008
BspACI	CCGC	4 cut(s)	5, 132, 477, 620
BspANI	GGCC	2 cut(s)	312, 480
BspCNI	CTCAG	1 cut(s)	715
BspFNI	CGCG	1 cut(s)	132
BspMAI	CTGCAG	1 cut(s)	803
BspPI	GGATC	3 cut(s)	15, 59, 713
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	608
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	8 cut(s)	7, 52, 64, 495, 718, 892, 951, 1008
Bst2UI	CCWGG	1 cut(s)	772
Bst4CI	ACNGT	2 cut(s)	658, 710
BstC8I	GCNNGC	3 cut(s)	314, 475, 604
BstDEI	CTNAG	5 cut(s)	528, 723, 816, 864, 1005
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	2 cut(s)	117, 700
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	8 cut(s)	10, 55, 67, 498, 721, 895, 954, 1011
BstMAI	GTCTC	3 cut(s)	158, 206, 719
BstMBI	GATC	8 cut(s)	7, 52, 64, 495, 718, 892, 951, 1008
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 980
BstNI	CCWGG	1 cut(s)	772
BstSCI	CCNGG	1 cut(s)	770
BstSFI	CTRYAG	1 cut(s)	799
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	785
BstV2I	GAAGAC	1 cut(s)	659
BstX2I	RGATCY	3 cut(s)	7, 64, 1008
BstYI	RGATCY	3 cut(s)	7, 64, 1008
BsuRI	GGCC	2 cut(s)	312, 480
BtgI	CCRYGG	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	117, 700
BtsI	GCAGTG	2 cut(s)	808, 990
BtsIMutI	CAGTG	2 cut(s)	808, 990
Cac8I	GCNNGC	3 cut(s)	314, 475, 604
CfoI	GCGC	1 cut(s)	608
Csp6I	GTAC	4 cut(s)	128, 532, 565, 689
CviAII	CATG	5 cut(s)	225, 286, 616, 670, 910
CviQI	GTAC	4 cut(s)	128, 532, 565, 689
DdeI	CTNAG	5 cut(s)	528, 723, 816, 864, 1005
DpnI	GATC	8 cut(s)	9, 54, 66, 497, 720, 894, 953, 1010
DpnII	GATC	8 cut(s)	7, 52, 64, 495, 718, 892, 951, 1008
DraIII	CACNNNGTG	1 cut(s)	308
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
EaeI	YGGCCR	2 cut(s)	310, 478
EciI	GGCGGA	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	896
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	770
FaeI	CATG	5 cut(s)	228, 289, 619, 673, 913
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	5 cut(s)	224, 285, 615, 669, 909
FauI	CCCGC	1 cut(s)	613
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	2 cut(s)	478, 799
FokI	GGATG	2 cut(s)	124, 707
Fsp4HI	GCNGC	2 cut(s)	478, 799
FspI	TGCGCA	1 cut(s)	607
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	2 cut(s)	478, 799
HaeIII	GGCC	2 cut(s)	312, 480
HhaI	GCGC	1 cut(s)	608
Hin1II	CATG	5 cut(s)	228, 289, 619, 673, 913
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HincII	GTYRAC	2 cut(s)	433, 667
HindII	GTYRAC	2 cut(s)	433, 667
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	3 cut(s)	89, 367, 394
HphI	GGTGA	4 cut(s)	73, 490, 880, 953
Hpy166II	GTNNAC	3 cut(s)	34, 433, 667
Hpy188I	TCNGA	2 cut(s)	12, 52
Hpy188III	TCNNGA	5 cut(s)	62, 194, 704, 722, 896
Hpy8I	GTNNAC	3 cut(s)	34, 433, 667
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	3 cut(s)	31, 78, 916
HpyCH4III	ACNGT	2 cut(s)	658, 710
HpyCH4IV	ACGT	2 cut(s)	30, 858
HpyCH4V	TGCA	3 cut(s)	243, 541, 801
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 980
HpyF3I	CTNAG	5 cut(s)	528, 723, 816, 864, 1005
HpySE526I	ACGT	2 cut(s)	30, 858
Hsp92II	CATG	5 cut(s)	228, 289, 619, 673, 913
HspAI	GCGC	1 cut(s)	606
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	8 cut(s)	7, 52, 64, 495, 718, 892, 951, 1008
LmnI	GCTCC	2 cut(s)	773, 902
Lsp1109I	GCAGC	1 cut(s)	785
LweI	GCATC	1 cut(s)	102
MaeII	ACGT	2 cut(s)	30, 858
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	8 cut(s)	9, 54, 66, 497, 720, 894, 953, 1010
MboI	GATC	8 cut(s)	7, 52, 64, 495, 718, 892, 951, 1008
MboII	GAAGA	4 cut(s)	584, 664, 767, 818
MflI	RGATCY	3 cut(s)	7, 64, 1008
MhlI	GDGCHC	1 cut(s)	232
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	4 cut(s)	77, 628, 675, 975
MluNI	TGGCCA	1 cut(s)	312
MnlI	CCTC	7 cut(s)	35, 128, 230, 446, 448, 892, 1011
Mox20I	TGGCCA	1 cut(s)	312
MroXI	GAANNNNTTC	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	3 cut(s)	357, 450, 783
MslI	CAYNNNNRTG	1 cut(s)	645
Msp20I	TGGCCA	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	772
MvaI	CCWGG	1 cut(s)	772
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	184, 980
NdeII	GATC	8 cut(s)	7, 52, 64, 495, 718, 892, 951, 1008
NlaIII	CATG	5 cut(s)	228, 289, 619, 673, 913
NmuCI	GTSAC	1 cut(s)	298
NsbI	TGCGCA	1 cut(s)	607
PaeR7I	CTCGAG	1 cut(s)	896
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	3 cut(s)	89, 367, 394
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	479, 800
Psp1406I	AACGTT	1 cut(s)	858
Psp6I	CCWGG	1 cut(s)	770
PspGI	CCWGG	1 cut(s)	770
PstI	CTGCAG	1 cut(s)	803
PsuI	RGATCY	3 cut(s)	7, 64, 1008
RsaI	GTAC	4 cut(s)	129, 533, 566, 690
RsaNI	GTAC	4 cut(s)	128, 532, 565, 689
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	3 cut(s)	357, 450, 783
SatI	GCNGC	2 cut(s)	478, 799
Sau3AI	GATC	8 cut(s)	7, 52, 64, 495, 718, 892, 951, 1008
ScaI	AGTACT	1 cut(s)	533
ScrFI	CCNGG	1 cut(s)	772
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	799
Sfr274I	CTCGAG	1 cut(s)	896
SlaI	CTCGAG	1 cut(s)	896
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	2 cut(s)	44, 896
SmoI	CTYRAG	2 cut(s)	44, 896
Sse9I	AATT	4 cut(s)	77, 628, 675, 975
SsiI	CCGC	4 cut(s)	5, 132, 477, 620
StyD4I	CCNGG	1 cut(s)	770
TaaI	ACNGT	2 cut(s)	658, 710
TaiI	ACGT	2 cut(s)	33, 861
TaqI	TCGA	3 cut(s)	27, 897, 954
TasI	AATT	4 cut(s)	77, 628, 675, 975
TatI	WGTACW	3 cut(s)	531, 564, 688
TauI	GCSGC	1 cut(s)	480
TfiI	GAWTC	3 cut(s)	89, 367, 394
Tru1I	TTAA	3 cut(s)	357, 450, 783
Tru9I	TTAA	3 cut(s)	357, 450, 783
TscAI	CASTG	2 cut(s)	808, 990
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	798
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	898
TspGWI	ACGGA	2 cut(s)	124, 218
TspRI	CASTG	2 cut(s)	808, 990
Van91I	CCANNNNNTGG	1 cut(s)	341
XapI	RAATTY	3 cut(s)	77, 628, 675
XhoI	CTCGAG	1 cut(s)	896
XmnI	GAANNNNTTC	1 cut(s)	252
ZrmI	AGTACT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.