Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Reverse (-)

135903 .. 139756

Gene Structure 3854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00240.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCTGGACTACAATGTGCCTGGAGGAAAGCTGAATCGGGGATTGTCTGTTATCGACAGCTACCAGTTGCTGCAACATGGAAGGGAATTGACTGAAGATGAAATCTTCCTCGCCAGCGCTCTTGGTTGGTGCATCGAATGGCTCCAAGCATTCTTCCTGGTTCTCGATGACATGATGGATGGTTCTCACACACGGCGTGGCCAACCTTGCTGGTTTAGATTGCCCAAGGTTGGTCTGATTGCAGCAAATGATGGAGTTCTACTTAGAAACCATATTCCAAGGATTCTCAAGAAGCACTTCAGGCAAAAGCCATATTACGTGGATCTTCTTGATTTGTTCAATGAGGTGGAGTTTCAAACAGCGTCAGGTCAGATGATAGATTTGATCACTACCATTGACGGAGAAAAAGATCTATCCAAATACTCGTTGGCAATTCACCGCCGTATTGTTCAGTACAAGACTGCCTATTACTCCTTTTATCTTTCGGTTGCATGTGCATTGCTTATGTCAGGTGAGGAACTGGACAAGCATATTGATGTAAAGAACCTCCTTATTGATATGGGGATCTACTTTCAAGTACAGGATGATTATTTGGATTGTTTTGGTGATCCGGAAACAATTGGAAAGATAGGAACAGATATTGAAGATTTCAAGTGCTCTTGGTTGGTTGTGAAAGCTTTGGAACTTAGCAACGAGGAACAAAAGAAAACACTACATGAGAACTATGGAAACCCTGACCCAGCAAAGGTCGCCAAAGTAAAGGCCCTTTACAAAGAACTCGATCTTCAGGGTGTGTTTGCGGAGTATGAGAGGCAAAGCTACGAGAAGCTGACGAGTTCTATTGAAGCTCATCCAAGCAAGGCAGTGCAAGAAGTGTTGAAGTCCTTCTTGGGTAAGATATACAAGAGGCTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

306

Amino Acids

35.06

Weight (kDa)

5.68

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	33 - 297	9.2e-79	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	610
AciI	CCGC	2 cut(s)	439, 800
AclWI	GGATC	3 cut(s)	330, 572, 602
AcoI	YGGCCR	1 cut(s)	199
AcuI	CTGAAG	3 cut(s)	114, 283, 770
AdeI	CACNNNGTG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	455, 579
AfeI	AGCGCT	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	230, 745
AgsI	TTSAA	7 cut(s)	340, 356, 575, 644, 652, 845, 880
AjnI	CCWGG	2 cut(s)	19, 156
AjuI	GAANNNNNNNTTGG	2 cut(s)	872, 904
AluBI	AGCT	6 cut(s)	31, 60, 677, 819, 829, 848
AluI	AGCT	6 cut(s)	31, 60, 677, 819, 829, 848
Alw21I	GWGCWC	1 cut(s)	659
AlwI	GGATC	3 cut(s)	330, 572, 602
AlwNI	CAGNNNCTG	1 cut(s)	70
Aor13HI	TCCGGA	1 cut(s)	610
Aor51HI	AGCGCT	1 cut(s)	118
AoxI	GGCC	2 cut(s)	199, 762
ApeKI	GCWGC	2 cut(s)	70, 242
Asp700I	GAANNNNTTC	2 cut(s)	296, 884
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	763
AsuHPI	GGTGA	3 cut(s)	428, 524, 617
BalI	TGGCCA	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	57, 254
BccI	CCATC	3 cut(s)	169, 173, 245
BceAI	ACGGC	2 cut(s)	209, 426
BciT130I	CCWGG	2 cut(s)	21, 158
BclI	TGATCA	1 cut(s)	384
BfoI	RGCGCY	1 cut(s)	120
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	2 cut(s)	71, 243
BlsI	GCNGC	2 cut(s)	72, 244
Bme1390I	CCNGG	2 cut(s)	21, 158
BmgT120I	GGNCC	1 cut(s)	763
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	2 cut(s)	21, 158
BmsI	GCATC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	225, 278
BsaWI	WCCGGW	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 745
Bse1I	ACTGG	2 cut(s)	64, 525
Bse3DI	GCAATG	1 cut(s)	497
BseAI	TCCGGA	1 cut(s)	610
BseBI	CCWGG	2 cut(s)	21, 158
BseDI	CCNNGG	2 cut(s)	225, 278
BseGI	GGATG	3 cut(s)	184, 589, 850
BseLI	CCNNNNNNNGG	2 cut(s)	230, 745
BseMI	GCAATG	1 cut(s)	497
BseNI	ACTGG	2 cut(s)	64, 525
BseXI	GCAGC	2 cut(s)	57, 254
BseYI	CCCAGC	1 cut(s)	739
BshFI	GGCC	2 cut(s)	201, 764
BsiHKAI	GWGCWC	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	611
BslI	CCNNNNNNNGG	2 cut(s)	230, 745
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	201, 764
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp13I	TCCGGA	1 cut(s)	610
Bsp143I	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
BspACI	CCGC	2 cut(s)	439, 800
BspANI	GGCC	2 cut(s)	201, 764
BspEI	TCCGGA	1 cut(s)	610
BspLI	GGNNCC	1 cut(s)	143
BspPI	GGATC	3 cut(s)	330, 572, 602
BsrDI	GCAATG	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	64, 525
BssECI	CCNNGG	2 cut(s)	225, 278
BssMI	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
BssT1I	CCWWGG	2 cut(s)	225, 278
Bst2UI	CCWGG	2 cut(s)	21, 158
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	263, 686
BstF5I	GGATG	3 cut(s)	184, 589, 850
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	6 cut(s)	325, 387, 412, 567, 610, 784
BstMBI	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 301, 749
BstNI	CCWGG	2 cut(s)	21, 158
BstNSI	RCATGY	1 cut(s)	495
BstSCI	CCNGG	2 cut(s)	19, 156
BstV1I	GCAGC	2 cut(s)	57, 254
BstX2I	RGATCY	3 cut(s)	322, 409, 564
BstYI	RGATCY	3 cut(s)	322, 409, 564
BsuRI	GGCC	2 cut(s)	201, 764
BtsCI	GGATG	3 cut(s)	184, 589, 850
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	1 cut(s)	870
Cac8I	GCNNGC	1 cut(s)	115
CaiI	CAGNNNCTG	1 cut(s)	70
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	763
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	454, 578
CviAII	CATG	4 cut(s)	77, 172, 492, 716
CviQI	GTAC	2 cut(s)	454, 578
DdeI	CTNAG	2 cut(s)	263, 686
DpnI	GATC	6 cut(s)	324, 386, 411, 566, 609, 783
DpnII	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
DraIII	CACNNNGTG	1 cut(s)	197
EaeI	YGGCCR	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	225, 278
Eco47III	AGCGCT	1 cut(s)	118
Eco57I	CTGAAG	3 cut(s)	114, 283, 770
EcoO109I	RGGNCCY	1 cut(s)	763
EcoRII	CCWGG	2 cut(s)	19, 156
EcoT14I	CCWWGG	2 cut(s)	225, 278
ErhI	CCWWGG	2 cut(s)	225, 278
FaeI	CATG	4 cut(s)	80, 175, 495, 719
FalI	AAGNNNNNCTT	4 cut(s)	281, 313, 872, 904
FatI	CATG	4 cut(s)	76, 171, 491, 715
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	71, 243
FokI	GGATG	3 cut(s)	191, 596, 837
Fsp4HI	GCNGC	2 cut(s)	71, 243
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	2 cut(s)	71, 243
GsaI	CCCAGC	1 cut(s)	743
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	201, 764
HapII	CCGG	1 cut(s)	611
HgaI	GACGC	1 cut(s)	351
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	4 cut(s)	80, 175, 495, 719
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	675
HinfI	GANTC	2 cut(s)	34, 283
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	3 cut(s)	428, 524, 617
Hpy188I	TCNGA	2 cut(s)	237, 372
Hpy188III	TCNNGA	4 cut(s)	164, 289, 329, 611
HpyAV	CCTTC	2 cut(s)	75, 895
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	6 cut(s)	73, 132, 242, 491, 497, 868
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 301, 749
HpyF3I	CTNAG	2 cut(s)	263, 686
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	4 cut(s)	80, 175, 495, 719
HspAI	GCGC	1 cut(s)	117
Kpn2I	TCCGGA	1 cut(s)	610
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
LmnI	GCTCC	1 cut(s)	147
Lsp1109I	GCAGC	2 cut(s)	57, 254
LweI	GCATC	1 cut(s)	141
MaeII	ACGT	1 cut(s)	318
MalI	GATC	6 cut(s)	324, 386, 411, 566, 609, 783
MboI	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
MboII	GAAGA	6 cut(s)	97, 107, 145, 317, 656, 776
MfeI	CAATTG	1 cut(s)	618
MflI	RGATCY	3 cut(s)	322, 409, 564
MhlI	GDGCHC	1 cut(s)	659
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	3 cut(s)	86, 432, 618
MluNI	TGGCCA	1 cut(s)	201
MnlI	CCTC	8 cut(s)	17, 119, 337, 508, 557, 688, 804, 900
Mox20I	TGGCCA	1 cut(s)	201
MroI	TCCGGA	1 cut(s)	610
MroXI	GAANNNNTTC	2 cut(s)	296, 884
MscI	TGGCCA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	201
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	2 cut(s)	21, 158
MunI	CAATTG	1 cut(s)	618
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	2 cut(s)	21, 158
MwoI	GCNNNNNNNGC	3 cut(s)	207, 301, 749
NdeII	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
NlaIII	CATG	4 cut(s)	80, 175, 495, 719
NlaIV	GGNNCC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	495
PctI	GAATGC	1 cut(s)	149
PdmI	GAANNNNTTC	2 cut(s)	296, 884
PfeI	GAWTC	2 cut(s)	34, 283
PkrI	GCNGC	2 cut(s)	72, 244
Ppu21I	YACGTR	1 cut(s)	319
Psp6I	CCWGG	2 cut(s)	19, 156
PspFI	CCCAGC	1 cut(s)	739
PspGI	CCWGG	2 cut(s)	19, 156
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	763
PstNI	CAGNNNCTG	1 cut(s)	70
PsuI	RGATCY	3 cut(s)	322, 409, 564
RsaI	GTAC	2 cut(s)	455, 579
RsaNI	GTAC	2 cut(s)	454, 578
RseI	CAYNNNNRTG	1 cut(s)	534
SatI	GCNGC	2 cut(s)	71, 243
Sau3AI	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
Sau96I	GGNCC	1 cut(s)	763
ScrFI	CCNGG	2 cut(s)	21, 158
SduI	GDGCHC	1 cut(s)	659
SfaNI	GCATC	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	3 cut(s)	86, 432, 618
SsiI	CCGC	2 cut(s)	439, 800
StyD4I	CCNGG	2 cut(s)	19, 156
StyI	CCWWGG	2 cut(s)	225, 278
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	4 cut(s)	54, 135, 165, 780
TasI	AATT	3 cut(s)	86, 432, 618
TatI	WGTACW	2 cut(s)	453, 577
TfiI	GAWTC	2 cut(s)	34, 283
TscAI	CASTG	1 cut(s)	870
TseI	GCWGC	2 cut(s)	70, 242
TspDTI	ATGAA	1 cut(s)	114
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	870
XceI	RCATGY	1 cut(s)	495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XmnI	GAANNNNTTC	2 cut(s)	296, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.