Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Reverse (-)

35288996 .. 35292926

Gene Structure 3931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g42290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAGCAATTTGAAAGTCAAGTTCTTGGAGGTCTACTCTGTTTTGAAATCCGAGCTCATCAATGACCCTGCTTTCGAATTCACAGATGTTTCTCGCCAATGGATCGAGCGGATGCTGGACTACAACGTTCCAGGAGGAAAGTTGAATCGTGGACTATCCGTTGTTGACAGCTTAAAATTACTTAAGGAAGGAGGGGAGCTAACAGATGATGAAGTTTTTCAGTCTTGTGCACTTGGTTGGTGTATTGAATGGCTTCAAGCTTACTTTCTTGTTCTTGATGACATCATGGATGGCTCCCATACGCGTAGGGGTCAGCCCTGCTGGTTCAGACTACCAAAGATTGGCATGATTGCTGCGAATGATGGCATCATTCTTCGTAATCATATTCCAAGGATTCTCAAAAAGCATTTTAGGGTGAAGCCGTACTACGTGGATCTGCTGGATTTATTTAACGAGGTGGAATTTCAAACCGCCCATGGACAAATGATTGATTTAATCACCACTCATGAAGGAGAGAAAGATCTATCGAAGTACTCCTTGGGGATTCACCGGCGTATTGTTCAGTACAAAACAGCTTACTACTCATTTTACCTTCCAGTGGCATGTGCATTGTTAATGGCAGGAGAAAATCTTGAAAGCCATGCTGATGTGAAGAATGTTCTCGTTGAGATGGGAACTTATTTTCAAGTACAGGATGATTACTTGGATTGTTTTGGTGATCCTGAAGTGATCGGAAAGGTTGGGACTGACATTCAAGACTTCAAGTGTTCTTGGTTGGTTGTTAAAGCATTAGAACTTTCCAACGAGGAACAGAAGAAACTATTACATGAGAACTATGGGAAAGACGATCAAGAGTGTATTGCGAAAGTGAAAGAGCTATACAATGCCCTTGATCTTCAGGGTGTTTTTGCTGAGTATGAGAGCAGCAGTTACGACAAGATTACAAAATCCATTGAAGCTCATCCAAGTAAAGCGGTGCAGGCTGTGTTGAAGTCATTCTTGGCAAAGATATACAAGAGGCTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

343

Amino Acids

39.26

Weight (kDa)

5.56

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	33 - 296	8.9e-80	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccBSI	CCGCTC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	304
AciI	CCGC	3 cut(s)	109, 471, 974
AclI	AACGTT	1 cut(s)	126
AclWI	GGATC	3 cut(s)	110, 441, 713
AcsI	RAATTY	2 cut(s)	77, 461
AcuI	CTGAAG	2 cut(s)	744, 881
AfaI	GTAC	4 cut(s)	425, 533, 566, 690
AfiI	CCNNNNNNNGG	2 cut(s)	341, 598
AflII	CTTAAG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	4 cut(s)	521, 553, 983, 1015
AluBI	AGCT	7 cut(s)	55, 171, 199, 260, 575, 877, 959
AluI	AGCT	7 cut(s)	55, 171, 199, 260, 575, 877, 959
Alw21I	GWGCWC	2 cut(s)	57, 232
Alw44I	GTGCAC	1 cut(s)	228
AlwI	GGATC	3 cut(s)	110, 441, 713
ApaLI	GTGCAC	1 cut(s)	228
ApeKI	GCWGC	2 cut(s)	353, 924
ApoI	RAATTY	2 cut(s)	77, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
Asp700I	GAANNNNTTC	3 cut(s)	216, 252, 995
AsuHPI	GGTGA	4 cut(s)	427, 490, 539, 728
AsuII	TTCGAA	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	57
BarI	GAAGNNNNNNTAC	2 cut(s)	410, 442
Bbv12I	GWGCWC	2 cut(s)	57, 232
BbvI	GCAGC	2 cut(s)	340, 936
BccI	CCATC	3 cut(s)	284, 356, 664
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	132
BfrI	CTTAAG	1 cut(s)	182
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	2 cut(s)	354, 925
BlsI	GCNGC	2 cut(s)	355, 926
BmcAI	AGTACT	1 cut(s)	533
Bme1390I	CCNGG	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	2 cut(s)	102, 375
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
Bpu14I	TTCGAA	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	430
BsaJI	CCNNGG	3 cut(s)	389, 475, 537
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 598
Bse118I	RCCGGY	1 cut(s)	549
Bse1I	ACTGG	1 cut(s)	596
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	3 cut(s)	389, 475, 537
BseGI	GGATG	4 cut(s)	117, 295, 700, 961
BseLI	CCNNNNNNNGG	2 cut(s)	341, 598
BseMII	CTCAG	1 cut(s)	903
BseNI	ACTGG	1 cut(s)	596
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	340, 936
BsgI	GTGCAG	1 cut(s)	998
Bsh1236I	CGCG	1 cut(s)	304
BsiHKAI	GWGCWC	2 cut(s)	57, 232
BsiSI	CCGG	1 cut(s)	550
BslFI	GGGAC	1 cut(s)	757
BslI	CCNNNNNNNGG	2 cut(s)	341, 598
BsmFI	GGGAC	1 cut(s)	757
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	57, 232
Bsp143I	GATC	7 cut(s)	102, 433, 520, 718, 729, 847, 892
Bsp19I	CCATGG	1 cut(s)	475
BspACI	CCGC	3 cut(s)	109, 471, 974
BspCNI	CTCAG	1 cut(s)	904
BspFNI	CGCG	1 cut(s)	304
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	3 cut(s)	110, 441, 713
BspT104I	TTCGAA	1 cut(s)	75
BspTI	CTTAAG	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	596
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	3 cut(s)	389, 475, 537
BssMI	GATC	7 cut(s)	102, 433, 520, 718, 729, 847, 892
BssT1I	CCWWGG	3 cut(s)	389, 475, 537
Bst2UI	CCWGG	1 cut(s)	132
BstAFI	CTTAAG	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	430
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	981
BstDEI	CTNAG	1 cut(s)	912
BstDSI	CCRYGG	1 cut(s)	475
BstF5I	GGATG	4 cut(s)	117, 295, 700, 961
BstFNI	CGCG	1 cut(s)	304
BstKTI	GATC	7 cut(s)	105, 436, 523, 721, 732, 850, 895
BstMBI	GATC	7 cut(s)	102, 433, 520, 718, 729, 847, 892
BstMWI	GCNNNNNNNGC	1 cut(s)	980
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	1 cut(s)	304
BstV1I	GCAGC	2 cut(s)	340, 936
BstX2I	RGATCY	2 cut(s)	433, 520
BstYI	RGATCY	2 cut(s)	433, 520
BtgI	CCRYGG	1 cut(s)	475
BtsCI	GGATG	4 cut(s)	117, 295, 700, 961
BtsIMutI	CAGTG	1 cut(s)	603
Cac8I	GCNNGC	1 cut(s)	981
CciI	TCATGA	1 cut(s)	505
Cfr10I	RCCGGY	1 cut(s)	549
Csp6I	GTAC	4 cut(s)	424, 532, 565, 689
CviAII	CATG	7 cut(s)	286, 346, 476, 506, 603, 641, 827
CviQI	GTAC	4 cut(s)	424, 532, 565, 689
DdeI	CTNAG	1 cut(s)	912
DpnI	GATC	7 cut(s)	104, 435, 522, 720, 731, 849, 894
DpnII	GATC	7 cut(s)	102, 433, 520, 718, 729, 847, 892
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	3 cut(s)	389, 475, 537
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	2 cut(s)	744, 881
EcoICRI	GAGCTC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	3 cut(s)	389, 475, 537
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	3 cut(s)	389, 475, 537
FaeI	CATG	7 cut(s)	289, 349, 479, 509, 606, 644, 830
FalI	AAGNNNNNCTT	4 cut(s)	521, 553, 983, 1015
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	7 cut(s)	285, 345, 475, 505, 602, 640, 826
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	354, 925
FokI	GGATG	4 cut(s)	124, 302, 707, 948
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	2 cut(s)	354, 925
GluI	GCNGC	2 cut(s)	354, 925
HapII	CCGG	1 cut(s)	550
Hin1II	CATG	7 cut(s)	289, 349, 479, 509, 606, 644, 830
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	3 cut(s)	145, 394, 544
HpaII	CCGG	1 cut(s)	550
HphI	GGTGA	4 cut(s)	427, 490, 539, 728
Hpy166II	GTNNAC	4 cut(s)	34, 152, 166, 230
Hpy188I	TCNGA	3 cut(s)	52, 329, 734
Hpy188III	TCNNGA	6 cut(s)	275, 506, 632, 722, 755, 851
Hpy8I	GTNNAC	4 cut(s)	34, 152, 166, 230
HpyAV	CCTTC	3 cut(s)	182, 503, 602
HpyCH4IV	ACGT	2 cut(s)	126, 429
HpyCH4V	TGCA	3 cut(s)	230, 608, 979
HpyF10VI	GCNNNNNNNGC	1 cut(s)	980
HpyF3I	CTNAG	1 cut(s)	912
HpySE526I	ACGT	2 cut(s)	126, 429
Hsp92II	CATG	7 cut(s)	289, 349, 479, 509, 606, 644, 830
Kzo9I	GATC	7 cut(s)	102, 433, 520, 718, 729, 847, 892
LmnI	GCTCC	2 cut(s)	196, 299
Lsp1109I	GCAGC	2 cut(s)	340, 936
LweI	GCATC	2 cut(s)	102, 375
MaeII	ACGT	2 cut(s)	126, 429
MaeIII	GTNAC	1 cut(s)	929
MalI	GATC	7 cut(s)	104, 435, 522, 720, 731, 849, 894
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	7 cut(s)	102, 433, 520, 718, 729, 847, 892
MboII	GAAGA	4 cut(s)	365, 664, 826, 887
MflI	RGATCY	2 cut(s)	433, 520
MhlI	GDGCHC	2 cut(s)	57, 232
MluCI	AATT	4 cut(s)	7, 77, 176, 461
MluI	ACGCGT	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	825
MnlI	CCTC	6 cut(s)	22, 128, 185, 448, 799, 1011
MroXI	GAANNNNTTC	3 cut(s)	216, 252, 995
MseI	TTAA	6 cut(s)	173, 183, 450, 494, 614, 783
MslI	CAYNNNNRTG	1 cut(s)	645
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	1 cut(s)	550
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	980
NcoI	CCATGG	1 cut(s)	475
NdeII	GATC	7 cut(s)	102, 433, 520, 718, 729, 847, 892
NlaIII	CATG	7 cut(s)	289, 349, 479, 509, 606, 644, 830
NlaIV	GGNNCC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	606
NspV	TTCGAA	1 cut(s)	75
PagI	TCATGA	1 cut(s)	505
PdmI	GAANNNNTTC	3 cut(s)	216, 252, 995
PfeI	GAWTC	3 cut(s)	145, 394, 544
PflMI	CCANNNNNTGG	1 cut(s)	341
PfoI	TCCNGGA	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	355, 926
Ppu21I	YACGTR	1 cut(s)	430
Psp124BI	GAGCTC	1 cut(s)	57
Psp1406I	AACGTT	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	295
PsuI	RGATCY	2 cut(s)	433, 520
RsaI	GTAC	4 cut(s)	425, 533, 566, 690
RsaNI	GTAC	4 cut(s)	424, 532, 565, 689
RseI	CAYNNNNRTG	1 cut(s)	645
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	6 cut(s)	173, 183, 450, 494, 614, 783
SatI	GCNGC	2 cut(s)	354, 925
Sau3AI	GATC	7 cut(s)	102, 433, 520, 718, 729, 847, 892
ScaI	AGTACT	1 cut(s)	533
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	2 cut(s)	57, 232
SfaNI	GCATC	2 cut(s)	102, 375
SfuI	TTCGAA	1 cut(s)	75
SgrAI	CRCCGGYG	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	4 cut(s)	7, 77, 176, 461
SsiI	CCGC	3 cut(s)	109, 471, 974
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	3 cut(s)	389, 475, 537
TaiI	ACGT	2 cut(s)	129, 432
TaqI	TCGA	3 cut(s)	75, 105, 527
TasI	AATT	4 cut(s)	7, 77, 176, 461
TatI	WGTACW	3 cut(s)	531, 564, 688
TfiI	GAWTC	3 cut(s)	145, 394, 544
Tru1I	TTAA	6 cut(s)	173, 183, 450, 494, 614, 783
Tru9I	TTAA	6 cut(s)	173, 183, 450, 494, 614, 783
TscAI	CASTG	1 cut(s)	603
TseI	GCWGC	2 cut(s)	353, 924
TspDTI	ATGAA	2 cut(s)	225, 522
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	1 cut(s)	603
Van91I	CCANNNNNTGG	1 cut(s)	341
Vha464I	CTTAAG	1 cut(s)	182
VneI	GTGCAC	1 cut(s)	228
XapI	RAATTY	2 cut(s)	77, 461
XceI	RCATGY	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	3 cut(s)	216, 252, 995
ZrmI	AGTACT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.