Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001680.1

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Forward (+)

45948 .. 48748

Gene Structure 2801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001680.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atggcggatctcaagtcaaagttcctgaacgtctactctgttctgaaatcggagctcttggaagaccctgccttcgaattcactgacgcctctcgtcaatgggtggaacggatgctggactacaatgtgcccggaggaaagctgaatcgcggactgtcggttattgacagctaccagttgttgcaacaaggaagggaactgactgaagatgaaatcttccaagccagcgctcttggttggtgcatcgaatggctccaagcattttttctggttctcgatgacatgatggatggctctcacacacggcgtggccaaccttgctggtttagattgtccaaggttggtttgattgcagcaaatgatggagttctacttagaaaccatattccaaggattctcaagaagcactttaggcaaaagccatattacgtggatcttgttgatttgttcaatgaggtggagtttcaaaccgcttcaggtcagctgatagatttgatcactaccattgacggagaaaaagatctatccaaatactcattgtcaattcaccgccgtattgttcagtacaagactgcctattactcattttacctttcagttgcatgtgcattgcttatgtcaggtgaggaactggacaagcatattgatgtaaagaatcttcttgttgatatggggatctactttcaagtacaggatgattatttggattgttttggtgatccagaaataattggaaagataggaacagatattgaagatttcaagtgctcttggttggttgtgaaagctttggaacttagcaatgaggaacagaagaaaatactacatgtatgtgataccatgcaattaataacgactcttatcgtatctagttgctggttggtaagaaaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

298

Amino Acids

34.38

Weight (kDa)

5.02

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	150
AciI	CCGC	4 cut(s)	5, 150, 471, 550
AclWI	GGATC	4 cut(s)	15, 441, 683, 713
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	2 cut(s)	225, 459
AcyI	GRCGYC	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	2 cut(s)	566, 690
AfeI	AGCGCT	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	826
AgsI	TTSAA	5 cut(s)	451, 467, 686, 755, 763
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	5 cut(s)	55, 142, 171, 484, 788
AluI	AGCT	5 cut(s)	55, 142, 171, 484, 788
Alw21I	GWGCWC	2 cut(s)	57, 770
AlwI	GGATC	4 cut(s)	15, 441, 683, 713
Aor51HI	AGCGCT	1 cut(s)	229
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	77
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AseI	ATTAAT	1 cut(s)	848
AspLEI	GCGC	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	3 cut(s)	539, 635, 728
AsuII	TTCGAA	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	132
BalI	TGGCCA	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	57
BarI	GAAGNNNNNNTAC	2 cut(s)	642, 674
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	57, 770
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	3 cut(s)	280, 284, 356
BceAI	ACGGC	2 cut(s)	320, 537
BclI	TGATCA	1 cut(s)	495
BcnI	CCSGG	1 cut(s)	132
BfaI	CTAG	1 cut(s)	870
BfoI	RGCGCY	1 cut(s)	231
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	2 cut(s)	102, 252
BpiI	GAAGAC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	430
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	336, 389
Bse1I	ACTGG	2 cut(s)	175, 636
Bse3DI	GCAATG	2 cut(s)	608, 808
BseDI	CCNNGG	2 cut(s)	336, 389
BseGI	GGATG	3 cut(s)	117, 295, 700
BseMI	GCAATG	2 cut(s)	608, 808
BseNI	ACTGG	2 cut(s)	175, 636
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	312
BsiHKAI	GWGCWC	2 cut(s)	57, 770
BsiSI	CCGG	1 cut(s)	132
BsnI	GGCC	1 cut(s)	312
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	3 cut(s)	57, 132, 770
Bsp143I	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
BspACI	CCGC	4 cut(s)	5, 150, 471, 550
BspANI	GGCC	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	254
BspPI	GGATC	4 cut(s)	15, 441, 683, 713
BspT104I	TTCGAA	1 cut(s)	75
BsrDI	GCAATG	2 cut(s)	608, 808
BsrI	ACTGG	2 cut(s)	175, 636
BssECI	CCNNGG	2 cut(s)	336, 389
BssMI	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	2 cut(s)	336, 389
Bst4CI	ACNGT	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	430
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	2 cut(s)	374, 797
BstF5I	GGATG	3 cut(s)	117, 295, 700
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	6 cut(s)	10, 436, 498, 523, 678, 721
BstMBI	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
BstMWI	GCNNNNNNNGC	2 cut(s)	318, 412
BstNSI	RCATGY	2 cut(s)	606, 830
BstSCI	CCNGG	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	132
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	4 cut(s)	7, 433, 520, 675
BstYI	RGATCY	4 cut(s)	7, 433, 520, 675
BsuRI	GGCC	1 cut(s)	312
BtsCI	GGATG	3 cut(s)	117, 295, 700
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	226
CfoI	GCGC	1 cut(s)	230
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	565, 689
CviAII	CATG	4 cut(s)	283, 603, 827, 841
CviQI	GTAC	2 cut(s)	565, 689
DdeI	CTNAG	2 cut(s)	374, 797
DpnI	GATC	6 cut(s)	9, 435, 497, 522, 677, 720
DpnII	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
DraIII	CACNNNGTG	1 cut(s)	308
EaeI	YGGCCR	1 cut(s)	310
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	336, 389
Eco24I	GRGCYC	1 cut(s)	57
Eco47III	AGCGCT	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	2 cut(s)	225, 459
EcoICRI	GAGCTC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	77
EcoT14I	CCWWGG	2 cut(s)	336, 389
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	2 cut(s)	336, 389
FaeI	CATG	4 cut(s)	286, 606, 830, 844
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FatI	CATG	4 cut(s)	282, 602, 826, 840
FbaI	TGATCA	1 cut(s)	495
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	3 cut(s)	124, 302, 707
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	870
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	286, 606, 830, 844
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	786
HinfI	GANTC	4 cut(s)	145, 394, 655, 856
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	3 cut(s)	539, 635, 728
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	45, 52
Hpy188III	TCNNGA	4 cut(s)	25, 275, 400, 722
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	82, 186
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	2 cut(s)	30, 429
HpyCH4V	TGCA	6 cut(s)	184, 243, 353, 602, 608, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	318, 412
HpyF3I	CTNAG	2 cut(s)	374, 797
HpySE526I	ACGT	2 cut(s)	30, 429
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	286, 606, 830, 844
HspAI	GCGC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
LmnI	GCTCC	2 cut(s)	52, 258
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	2 cut(s)	102, 252
MaeI	CTAG	1 cut(s)	870
MaeII	ACGT	2 cut(s)	30, 429
MalI	GATC	6 cut(s)	9, 435, 497, 522, 677, 720
MboI	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
MboII	GAAGA	6 cut(s)	74, 208, 218, 650, 767, 826
MflI	RGATCY	4 cut(s)	7, 433, 520, 675
MhlI	GDGCHC	3 cut(s)	57, 132, 770
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	4 cut(s)	77, 543, 729, 845
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	850
MnlI	CCTC	5 cut(s)	100, 128, 448, 619, 799
Mox20I	TGGCCA	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	1 cut(s)	848
MslI	CAYNNNNRTG	2 cut(s)	645, 831
Msp20I	TGGCCA	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	484
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	318, 412
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
NlaIII	CATG	4 cut(s)	286, 606, 830, 844
NlaIV	GGNNCC	1 cut(s)	254
NspI	RCATGY	2 cut(s)	606, 830
NspV	TTCGAA	1 cut(s)	75
PciI	ACATGT	1 cut(s)	826
PfeI	GAWTC	3 cut(s)	145, 394, 655
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	1 cut(s)	850
PpsI	GAGTC	1 cut(s)	850
Ppu21I	YACGTR	1 cut(s)	430
PscI	ACATGT	1 cut(s)	826
PshBI	ATTAAT	1 cut(s)	848
Psp124BI	GAGCTC	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	254
PsuI	RGATCY	4 cut(s)	7, 433, 520, 675
PvuII	CAGCTG	1 cut(s)	484
RsaI	GTAC	2 cut(s)	566, 690
RsaNI	GTAC	2 cut(s)	565, 689
RseI	CAYNNNNRTG	2 cut(s)	645, 831
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	848
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
SchI	GAGTC	1 cut(s)	850
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	3 cut(s)	57, 132, 770
SfaNI	GCATC	2 cut(s)	102, 252
SfuI	TTCGAA	1 cut(s)	75
SmiMI	CAYNNNNRTG	2 cut(s)	645, 831
SmlI	CTYRAG	2 cut(s)	11, 398
SmoI	CTYRAG	2 cut(s)	11, 398
Sse9I	AATT	4 cut(s)	77, 543, 729, 845
SsiI	CCGC	4 cut(s)	5, 150, 471, 550
SspMI	CTAG	1 cut(s)	870
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	2 cut(s)	336, 389
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	2 cut(s)	33, 432
TaqI	TCGA	3 cut(s)	75, 246, 276
TasI	AATT	4 cut(s)	77, 543, 729, 845
TatI	WGTACW	2 cut(s)	564, 688
TfiI	GAWTC	3 cut(s)	145, 394, 655
Tru1I	TTAA	1 cut(s)	848
Tru9I	TTAA	1 cut(s)	848
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	2 cut(s)	124, 525
TspRI	CASTG	1 cut(s)	88
VspI	ATTAAT	1 cut(s)	848
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	2 cut(s)	606, 830
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.