Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Reverse (-)

197115 .. 201112

Gene Structure 3998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G002700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCGGATCTGAAGTCAAAGTTTCTCCAGGTCTACTCTGTTCTTAAATCGGAGCTCTTGGAAGACCCTGCTTTTGAATTCACCAACGACTCTCGTCAATGGGTCGAGCGGATGATGGACTACAATGTTCCTGGAGGGAAGCTGAACCGGGGATTGTCTGTTATTGATAGCTATCAGCTGTTGCAAGAAGGAAGGGAATTAACTGAAGACGAAATCTTCCTGGCCAGTGCTCTTGGTTGGTGCATTGAATGGCTTCAAGCATTTTTTCTGGTTCTTGATGACATCATGGATGGCTCTCACACACGGCGTGGTCAACCTTGCTGGTTTAGATTGCCCAAGGTTGGTATGATTGCAGTAAATGATGGAGTTGTACTCAGAAACCATATTCCAAGGATCCTCCGAAAACACTTTAGGGAAAAGCCATACTATGTGGATCTTCTTGATTTGTTCAATGAGGTGGAATTCCAAACTGCTTCAGGTCAGATGATAGATTTGATCACTACTATTCAAGGAGAAAAAGATCTATCCAAATACTCTTTGTCAATTCACCGGCGTATTGTTCAGTACAAGACTGCCTATTACTCGTTTTATCTTTCAGTTGCATGTGCATTGCTTATGTCAGGTGAGGAACTGGAAAACCATATTGATGTAAAAAACCTTCTTATTGAGATGGGGATCTACTTTCAAGTACAGGATGATTATTTGGATTGCTATGGCAATCCTGAAACAATTGGTAAGATAGGAACAGACATTGAAGATTTCAAGTGCTCTTGGTTGGTTGTGAAAGCATTGGAACTTAGCAATGAGGAACAAAAGAAAATACTATATGAGAACTATGGGAAAGCAGACCCAGAAAATGTGGCAAAAGTAAAAGCCCTCTACAAAGAACTTGATATTGAGGGTGCATTTGCGGATTATGAGAGCAAAAGCTATGAGAAGCTGACGAGTGGTATTGAAGGTCACCCTAGCAAAGCGGTGCAAGCAGTGTTGAAGTCCTTCTTGGGCAAGATATACAAGAGGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

343

Amino Acids

39.45

Weight (kDa)

5.28

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	4 cut(s)	5, 109, 911, 974
AclWI	GGATC	5 cut(s)	15, 388, 401, 441, 683
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	77, 461
AcuI	CTGAAG	3 cut(s)	32, 225, 459
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	3 cut(s)	372, 566, 690
AfiI	CCNNNNNNNGG	1 cut(s)	341
AjnI	CCWGG	3 cut(s)	27, 130, 219
AjuI	GAANNNNNNNTTGG	2 cut(s)	983, 1015
AluBI	AGCT	6 cut(s)	55, 142, 171, 178, 930, 940
AluI	AGCT	6 cut(s)	55, 142, 171, 178, 930, 940
Alw21I	GWGCWC	3 cut(s)	57, 232, 770
AlwI	GGATC	5 cut(s)	15, 388, 401, 441, 683
AoxI	GGCC	1 cut(s)	222
ApoI	RAATTY	2 cut(s)	77, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
Asp700I	GAANNNNTTC	2 cut(s)	252, 995
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	4 cut(s)	73, 539, 635, 953
BalI	TGGCCA	1 cut(s)	224
BamHI	GGATCC	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	57
BarI	GAAGNNNNNNTAC	2 cut(s)	642, 674
BbsI	GAAGAC	2 cut(s)	69, 213
Bbv12I	GWGCWC	3 cut(s)	57, 232, 770
BccI	CCATC	4 cut(s)	109, 284, 356, 664
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	3 cut(s)	29, 132, 221
BclI	TGATCA	1 cut(s)	495
BcnI	CCSGG	1 cut(s)	149
BfaI	CTAG	1 cut(s)	966
BglII	AGATCT	1 cut(s)	520
Bme1390I	CCNGG	4 cut(s)	29, 132, 149, 221
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	4 cut(s)	29, 132, 149, 221
BoxI	GACNNNNGTC	1 cut(s)	93
BpiI	GAAGAC	2 cut(s)	69, 213
BplI	GAGNNNNNCTC	2 cut(s)	357, 389
BpmI	CTGGAG	2 cut(s)	11, 153
BpuMI	CCSGG	1 cut(s)	149
BsaBI	GATNNNNATC	2 cut(s)	171, 674
BsaJI	CCNNGG	3 cut(s)	148, 336, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse118I	RCCGGY	1 cut(s)	549
Bse1I	ACTGG	2 cut(s)	225, 636
Bse3DI	GCAATG	2 cut(s)	608, 808
Bse8I	GATNNNNATC	2 cut(s)	171, 674
BseBI	CCWGG	3 cut(s)	29, 132, 221
BseDI	CCNNGG	3 cut(s)	148, 336, 389
BseGI	GGATG	3 cut(s)	117, 295, 700
BseJI	GATNNNNATC	2 cut(s)	171, 674
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	2 cut(s)	608, 808
BseMII	CTCAG	1 cut(s)	388
BseNI	ACTGG	2 cut(s)	225, 636
BshFI	GGCC	1 cut(s)	224
BsiHKAI	GWGCWC	3 cut(s)	57, 232, 770
BsiSI	CCGG	2 cut(s)	148, 550
BslI	CCNNNNNNNGG	1 cut(s)	341
BsnI	GGCC	1 cut(s)	224
Bsp1286I	GDGCHC	3 cut(s)	57, 232, 770
Bsp143I	GATC	6 cut(s)	7, 393, 433, 495, 520, 675
BspACI	CCGC	4 cut(s)	5, 109, 911, 974
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	395
BspPI	GGATC	5 cut(s)	15, 388, 401, 441, 683
BsrBI	CCGCTC	1 cut(s)	109
BsrDI	GCAATG	2 cut(s)	608, 808
BsrFI	RCCGGY	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	225, 636
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	3 cut(s)	148, 336, 389
BssMI	GATC	6 cut(s)	7, 393, 433, 495, 520, 675
BssT1I	CCWWGG	2 cut(s)	336, 389
Bst2UI	CCWGG	3 cut(s)	29, 132, 221
BstC8I	GCNNGC	1 cut(s)	981
BstDEI	CTNAG	2 cut(s)	374, 797
BstEII	GGTNACC	1 cut(s)	959
BstF5I	GGATG	3 cut(s)	117, 295, 700
BstKTI	GATC	6 cut(s)	10, 396, 436, 498, 523, 678
BstMBI	GATC	6 cut(s)	7, 393, 433, 495, 520, 675
BstMWI	GCNNNNNNNGC	1 cut(s)	980
BstNI	CCWGG	3 cut(s)	29, 132, 221
BstNSI	RCATGY	1 cut(s)	606
BstPAI	GACNNNNGTC	1 cut(s)	93
BstPI	GGTNACC	1 cut(s)	959
BstSCI	CCNGG	4 cut(s)	27, 130, 147, 219
BstV2I	GAAGAC	2 cut(s)	69, 213
BstX2I	RGATCY	5 cut(s)	7, 393, 433, 520, 675
BstYI	RGATCY	5 cut(s)	7, 393, 433, 520, 675
BsuRI	GGCC	1 cut(s)	224
BtsCI	GGATG	3 cut(s)	117, 295, 700
BtsI	GCAGTG	1 cut(s)	990
BtsIMutI	CAGTG	2 cut(s)	232, 990
Cac8I	GCNNGC	1 cut(s)	981
Cfr10I	RCCGGY	1 cut(s)	549
Csp6I	GTAC	3 cut(s)	371, 565, 689
CviAII	CATG	2 cut(s)	286, 603
CviQI	GTAC	3 cut(s)	371, 565, 689
DdeI	CTNAG	2 cut(s)	374, 797
DpnI	GATC	6 cut(s)	9, 395, 435, 497, 522, 677
DpnII	GATC	6 cut(s)	7, 393, 433, 495, 520, 675
DraIII	CACNNNGTG	1 cut(s)	308
EaeI	YGGCCR	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	336, 389
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	3 cut(s)	32, 225, 459
Eco91I	GGTNACC	1 cut(s)	959
EcoICRI	GAGCTC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	959
EcoRI	GAATTC	2 cut(s)	77, 461
EcoRII	CCWGG	3 cut(s)	27, 130, 219
EcoT14I	CCWWGG	2 cut(s)	336, 389
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	2 cut(s)	336, 389
FaeI	CATG	2 cut(s)	289, 606
FalI	AAGNNNNNCTT	2 cut(s)	983, 1015
FatI	CATG	2 cut(s)	285, 602
FbaI	TGATCA	1 cut(s)	495
FblI	GTMKAC	1 cut(s)	33
FokI	GGATG	3 cut(s)	124, 302, 707
FriOI	GRGCYC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	966
GsuI	CTGGAG	2 cut(s)	11, 153
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	2 cut(s)	148, 550
Hin1II	CATG	2 cut(s)	289, 606
HincII	GTYRAC	1 cut(s)	314
HindII	GTYRAC	1 cut(s)	314
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	148, 550
HphI	GGTGA	4 cut(s)	73, 539, 635, 953
Hpy166II	GTNNAC	2 cut(s)	34, 314
Hpy188I	TCNGA	5 cut(s)	12, 52, 377, 401, 483
Hpy188III	TCNNGA	3 cut(s)	275, 440, 722
Hpy8I	GTNNAC	2 cut(s)	34, 314
HpyAV	CCTTC	5 cut(s)	182, 186, 668, 950, 1006
HpyCH4V	TGCA	7 cut(s)	184, 243, 353, 602, 608, 905, 979
HpyF10VI	GCNNNNNNNGC	1 cut(s)	980
HpyF3I	CTNAG	2 cut(s)	374, 797
Hsp92II	CATG	2 cut(s)	289, 606
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	6 cut(s)	7, 393, 433, 495, 520, 675
LmnI	GCTCC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	966
MaeIII	GTNAC	1 cut(s)	959
MalI	GATC	6 cut(s)	9, 395, 435, 497, 522, 677
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	6 cut(s)	7, 393, 433, 495, 520, 675
MboII	GAAGA	5 cut(s)	74, 208, 218, 428, 767
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	5 cut(s)	7, 393, 433, 520, 675
MhlI	GDGCHC	3 cut(s)	57, 232, 770
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	5 cut(s)	77, 197, 461, 543, 729
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	8 cut(s)	128, 407, 448, 619, 799, 887, 892, 1011
Mox20I	TGGCCA	1 cut(s)	224
MroXI	GAANNNNTTC	2 cut(s)	252, 995
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	2 cut(s)	45, 200
MslI	CAYNNNNRTG	1 cut(s)	645
Msp20I	TGGCCA	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	2 cut(s)	148, 550
MspR9I	CCNGG	4 cut(s)	29, 132, 149, 221
MunI	CAATTG	1 cut(s)	729
MvaI	CCWGG	3 cut(s)	29, 132, 221
MwoI	GCNNNNNNNGC	1 cut(s)	980
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	6 cut(s)	7, 393, 433, 495, 520, 675
NlaIII	CATG	2 cut(s)	289, 606
NlaIV	GGNNCC	1 cut(s)	395
NmuCI	GTSAC	1 cut(s)	959
NspI	RCATGY	1 cut(s)	606
PdmI	GAANNNNTTC	2 cut(s)	252, 995
PfoI	TCCNGGA	1 cut(s)	130
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PshAI	GACNNNNGTC	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	3 cut(s)	27, 130, 219
PspEI	GGTNACC	1 cut(s)	959
PspGI	CCWGG	3 cut(s)	27, 130, 219
PspN4I	GGNNCC	1 cut(s)	395
PsuI	RGATCY	5 cut(s)	7, 393, 433, 520, 675
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	3 cut(s)	372, 566, 690
RsaNI	GTAC	3 cut(s)	371, 565, 689
RseI	CAYNNNNRTG	1 cut(s)	645
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	45, 200
Sau3AI	GATC	6 cut(s)	7, 393, 433, 495, 520, 675
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	4 cut(s)	29, 132, 149, 221
SduI	GDGCHC	3 cut(s)	57, 232, 770
SgrAI	CRCCGGYG	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	645
Sse9I	AATT	5 cut(s)	77, 197, 461, 543, 729
SsiI	CCGC	4 cut(s)	5, 109, 911, 974
SspMI	CTAG	1 cut(s)	966
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	4 cut(s)	27, 130, 147, 219
StyI	CCWWGG	2 cut(s)	336, 389
TaqI	TCGA	1 cut(s)	105
TasI	AATT	5 cut(s)	77, 197, 461, 543, 729
TatI	WGTACW	3 cut(s)	370, 564, 688
Tru1I	TTAA	2 cut(s)	45, 200
Tru9I	TTAA	2 cut(s)	45, 200
TscAI	CASTG	2 cut(s)	232, 990
TseFI	GTSAC	1 cut(s)	959
Tsp45I	GTSAC	1 cut(s)	959
TspRI	CASTG	2 cut(s)	232, 990
XapI	RAATTY	2 cut(s)	77, 461
XceI	RCATGY	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	2 cut(s)	252, 995
XspI	CTAG	1 cut(s)	966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.