Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Forward (+)

41560466 .. 41564657

Gene Structure 4192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1340100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCGGATCTCAAGTCAAAGTTTCTGAAGGTGTACTCCGTTCTGAAATCGGAGCTGTTGGAAGACCCTGCTTTCGACTTCACCAAGGACTCTCGCCAATGGGTCGAGCGGATGCTGGACTACAATGTGCCTGGAGGAAAGCTCAATCGGGGATTGTCTGTTATTGACAGCTATCAGTTGTTGCAACAAGGAAGGGAATTAACTGAAGATGAAATCTTCCTGGCCAGCGCTCTCGGTTGGTGCATCGAATGGCTTCAAGCATTTTTTCTGGTTCTTGATGACATCATGGATGGCTCTCACACACGGCGTGGTCAGCCTTGCTGGTTTAGATTGCCCAAGGTTGGTATGATTGCAGTAAATGATGGTGTTGTGCTTCGAAACCATATCCCAAGGATTCTCAGAAAGTACTTCAGAGAAAAGCCATATTACGTGGATCTTCTTGATTTGTTCAATGAGGTGGAATTTCAAACTGCCTCAGGTCAGATGATAGATTTGATCACTACCATCGAAGGAGAAAAAGATCTATCCAAATACTCATTGTCAATTCACCGCCGTATTGTTCAGTACAAGACTGCCTATTACTCATTTTACCTTTCCGTTGCATGTGCATTGCTTATGTCAGGTGAGGAACTGGAAAAACATATTGATGTAAAAAACATTCTTGTTGAGATGGGGATCTACTTTCAAGTACAGGATGATTATTTGGATTGCTTTGGTGATCCGGAAACGATTGGTAAGATAGGAACAGATATTGAAGATTTCAAGTGCTCTTGGTTGGTGGTGAAAGCTTTGGAACTCTGCAATGAGGAACAAAAGAAAGTACTACATGAGAATTATGGGAAACCAGACCCAGAAAATGTGGCAACAGTAAAGGCCCTCTACAAAGAACTCGATATTGAGGGTGTATTTGCGGATTATGAGAGCAAAAGCTACAAGAAACTGACGAGTTGGATTGAAGGGCACCCAAGCAAAGCGGTGCAAGCAGTGTTGAAGTCCTTCTTGGGCAAGATTTACAAGAGGCAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

343

Amino Acids

39.57

Weight (kDa)

5.45

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	33 - 297	7.6e-81	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	960
AccBSI	CCGCTC	1 cut(s)	109
AccIII	TCCGGA	1 cut(s)	721
AciI	CCGC	5 cut(s)	5, 109, 550, 911, 974
AclWI	GGATC	4 cut(s)	15, 441, 683, 713
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	3 cut(s)	47, 225, 394
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	5 cut(s)	35, 407, 566, 690, 822
AfeI	AGCGCT	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	8 cut(s)	257, 451, 467, 686, 755, 763, 956, 991
AjnI	CCWGG	2 cut(s)	130, 219
AjuI	GAANNNNNNNTTGG	2 cut(s)	983, 1015
AluBI	AGCT	5 cut(s)	55, 142, 171, 788, 930
AluI	AGCT	5 cut(s)	55, 142, 171, 788, 930
Alw21I	GWGCWC	1 cut(s)	770
AlwI	GGATC	4 cut(s)	15, 441, 683, 713
Aor13HI	TCCGGA	1 cut(s)	721
Aor51HI	AGCGCT	1 cut(s)	229
AoxI	GGCC	2 cut(s)	222, 873
ApoI	RAATTY	1 cut(s)	461
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
Asp700I	GAANNNNTTC	2 cut(s)	252, 995
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	874
AsuHPI	GGTGA	5 cut(s)	73, 539, 635, 728, 793
AsuII	TTCGAA	1 cut(s)	376
AxyI	CCTNAGG	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	963
BalI	TGGCCA	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	960
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	770
BccI	CCATC	4 cut(s)	284, 356, 512, 664
BceAI	ACGGC	2 cut(s)	320, 537
BciT130I	CCWGG	2 cut(s)	132, 221
BclI	TGATCA	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	231
BglII	AGATCT	1 cut(s)	520
BmcAI	AGTACT	2 cut(s)	407, 822
Bme1390I	CCNGG	2 cut(s)	132, 221
BmgT120I	GGNCC	1 cut(s)	874
BmiI	GGNNCC	1 cut(s)	962
BmrFI	CCNGG	2 cut(s)	132, 221
BmsI	GCATC	2 cut(s)	102, 252
BpiI	GAAGAC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
BpmI	CTGGAG	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	376
BsaAI	YACGTR	1 cut(s)	430
BsaBI	GATNNNNATC	1 cut(s)	674
BsaJI	CCNNGG	3 cut(s)	84, 336, 389
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	636
Bse21I	CCTNAGG	1 cut(s)	475
Bse3DI	GCAATG	2 cut(s)	608, 808
Bse8I	GATNNNNATC	1 cut(s)	674
BseAI	TCCGGA	1 cut(s)	721
BseBI	CCWGG	2 cut(s)	132, 221
BseDI	CCNNGG	3 cut(s)	84, 336, 389
BseGI	GGATG	3 cut(s)	117, 295, 700
BseJI	GATNNNNATC	1 cut(s)	674
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	2 cut(s)	608, 808
BseMII	CTCAG	2 cut(s)	412, 489
BseNI	ACTGG	1 cut(s)	636
BseSI	GKGCMC	1 cut(s)	963
BshFI	GGCC	2 cut(s)	224, 875
BshNI	GGYRCC	1 cut(s)	960
BsiHKAI	GWGCWC	1 cut(s)	770
BsiSI	CCGG	1 cut(s)	722
BslI	CCNNNNNNNGG	1 cut(s)	341
BsnI	GGCC	2 cut(s)	224, 875
Bsp119I	TTCGAA	1 cut(s)	376
Bsp1286I	GDGCHC	2 cut(s)	770, 963
Bsp13I	TCCGGA	1 cut(s)	721
Bsp143I	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
BspACI	CCGC	5 cut(s)	5, 109, 550, 911, 974
BspANI	GGCC	2 cut(s)	224, 875
BspCNI	CTCAG	2 cut(s)	411, 488
BspEI	TCCGGA	1 cut(s)	721
BspLI	GGNNCC	1 cut(s)	962
BspPI	GGATC	4 cut(s)	15, 441, 683, 713
BspT104I	TTCGAA	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	960
BsrBI	CCGCTC	1 cut(s)	109
BsrDI	GCAATG	2 cut(s)	608, 808
BsrI	ACTGG	1 cut(s)	636
BssECI	CCNNGG	3 cut(s)	84, 336, 389
BssMI	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
BssT1I	CCWWGG	3 cut(s)	84, 336, 389
Bst2UI	CCWGG	2 cut(s)	132, 221
Bst4CI	ACNGT	1 cut(s)	868
BstBAI	YACGTR	1 cut(s)	430
BstBI	TTCGAA	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	226, 981
BstDEI	CTNAG	2 cut(s)	398, 475
BstF5I	GGATG	3 cut(s)	117, 295, 700
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	6 cut(s)	10, 436, 498, 523, 678, 721
BstMBI	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 980
BstNI	CCWGG	2 cut(s)	132, 221
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	2 cut(s)	130, 219
BstSLI	GKGCMC	1 cut(s)	963
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	4 cut(s)	7, 433, 520, 675
BstYI	RGATCY	4 cut(s)	7, 433, 520, 675
Bsu36I	CCTNAGG	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	224, 875
BtsCI	GGATG	3 cut(s)	117, 295, 700
BtsI	GCAGTG	1 cut(s)	990
BtsIMutI	CAGTG	1 cut(s)	990
Cac8I	GCNNGC	2 cut(s)	226, 981
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	874
Csp6I	GTAC	5 cut(s)	34, 406, 565, 689, 821
CviAII	CATG	3 cut(s)	286, 603, 827
CviQI	GTAC	5 cut(s)	34, 406, 565, 689, 821
DdeI	CTNAG	2 cut(s)	398, 475
DpnI	GATC	6 cut(s)	9, 435, 497, 522, 677, 720
DpnII	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
DraIII	CACNNNGTG	1 cut(s)	308
EaeI	YGGCCR	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	84, 336, 389
Eco47III	AGCGCT	1 cut(s)	229
Eco57I	CTGAAG	3 cut(s)	47, 225, 394
Eco81I	CCTNAGG	1 cut(s)	475
EcoO109I	RGGNCCY	1 cut(s)	874
EcoRII	CCWGG	2 cut(s)	130, 219
EcoT14I	CCWWGG	3 cut(s)	84, 336, 389
ErhI	CCWWGG	3 cut(s)	84, 336, 389
FaeI	CATG	3 cut(s)	289, 606, 830
FalI	AAGNNNNNCTT	2 cut(s)	983, 1015
FatI	CATG	3 cut(s)	285, 602, 826
FbaI	TGATCA	1 cut(s)	495
FokI	GGATG	3 cut(s)	124, 302, 707
GlaI	GCGC	1 cut(s)	229
GsuI	CTGGAG	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	224, 875
HapII	CCGG	1 cut(s)	722
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	289, 606, 830
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	786
HinfI	GANTC	2 cut(s)	89, 394
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	5 cut(s)	73, 539, 635, 728, 793
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	6 cut(s)	27, 45, 52, 401, 413, 483
Hpy188III	TCNNGA	3 cut(s)	275, 440, 722
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	5 cut(s)	22, 186, 503, 950, 1006
HpyCH4III	ACNGT	1 cut(s)	868
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	7 cut(s)	184, 243, 353, 602, 608, 801, 979
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 980
HpyF3I	CTNAG	2 cut(s)	398, 475
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	289, 606, 830
HspAI	GCGC	1 cut(s)	228
Kpn2I	TCCGGA	1 cut(s)	721
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
LmnI	GCTCC	1 cut(s)	52
LweI	GCATC	2 cut(s)	102, 252
MaeII	ACGT	1 cut(s)	429
MalI	GATC	6 cut(s)	9, 435, 497, 522, 677, 720
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
MboII	GAAGA	5 cut(s)	74, 208, 218, 428, 767
MflI	RGATCY	4 cut(s)	7, 433, 520, 675
MhlI	GDGCHC	2 cut(s)	770, 963
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	4 cut(s)	197, 461, 543, 832
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	39, 929
MnlI	CCTC	8 cut(s)	128, 448, 484, 619, 799, 887, 892, 1011
Mox20I	TGGCCA	1 cut(s)	224
MroI	TCCGGA	1 cut(s)	721
MroXI	GAANNNNTTC	2 cut(s)	252, 995
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	1 cut(s)	200
MslI	CAYNNNNRTG	1 cut(s)	645
Msp20I	TGGCCA	1 cut(s)	224
MspI	CCGG	1 cut(s)	722
MspR9I	CCNGG	2 cut(s)	132, 221
MvaI	CCWGG	2 cut(s)	132, 221
MwoI	GCNNNNNNNGC	2 cut(s)	313, 980
NdeII	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
NlaIII	CATG	3 cut(s)	289, 606, 830
NlaIV	GGNNCC	1 cut(s)	962
NspI	RCATGY	1 cut(s)	606
NspV	TTCGAA	1 cut(s)	376
PdmI	GAANNNNTTC	2 cut(s)	252, 995
PfeI	GAWTC	1 cut(s)	394
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Ppu21I	YACGTR	1 cut(s)	430
Psp6I	CCWGG	2 cut(s)	130, 219
PspGI	CCWGG	2 cut(s)	130, 219
PspN4I	GGNNCC	1 cut(s)	962
PspPI	GGNCC	1 cut(s)	874
PsuI	RGATCY	4 cut(s)	7, 433, 520, 675
RsaI	GTAC	5 cut(s)	35, 407, 566, 690, 822
RsaNI	GTAC	5 cut(s)	34, 406, 565, 689, 821
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	1 cut(s)	200
Sau3AI	GATC	6 cut(s)	7, 433, 495, 520, 675, 718
Sau96I	GGNCC	1 cut(s)	874
ScaI	AGTACT	2 cut(s)	407, 822
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	132, 221
SduI	GDGCHC	2 cut(s)	770, 963
SfaNI	GCATC	2 cut(s)	102, 252
SfuI	TTCGAA	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	4 cut(s)	197, 461, 543, 832
SsiI	CCGC	5 cut(s)	5, 109, 550, 911, 974
StyD4I	CCNGG	2 cut(s)	130, 219
StyI	CCWWGG	3 cut(s)	84, 336, 389
TaaI	ACNGT	1 cut(s)	868
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	6 cut(s)	75, 105, 246, 376, 507, 891
TasI	AATT	4 cut(s)	197, 461, 543, 832
TatI	WGTACW	5 cut(s)	33, 405, 564, 688, 820
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	990
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	2 cut(s)	28, 586
TspRI	CASTG	1 cut(s)	990
XapI	RAATTY	1 cut(s)	461
XceI	RCATGY	1 cut(s)	606
XmnI	GAANNNNTTC	2 cut(s)	252, 995
ZrmI	AGTACT	2 cut(s)	407, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.