Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Forward (+)

2098645 .. 2102554

Gene Structure 3910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g02710.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGAAAATAGAAATGACTTGTTCTCCCTCCCTCAAAGCTTGCGGCTGGCATCTATTTATAGAGCCTCCTCCTTCTCCTTCCTCCATTCTTGTTCAAAGCTCTCCAAGCTCAAATCTTTTCCTTTCTCACTCCACATACACACACACTCTCTCTCTAGAAAAATGGGTGGTGATTTGAGGTCTAAGTTCTTGGAGGTTTACTCTGTTTTGAAATCTGAGCTTCTCAATGATCCGGCTTTCGAATTCACCGACGTTTCTCGTCAATGGGTCGAACGGATGCTGGACTACAATGTGCCTGGAGGAAAGCTGAATCGAGGTTTATCCGTTGTTGACAGCTTAAAATTACTCAAGGATGGAGAGGACCTAACGGATGATGAAATTTTTCATTCATCAGCACTTGGTTGGTGTATTGAATGGCTTCAAGCGTATTTTCTCGTTCTTGATGATATCATGGATGGCTCTCATACACGTAGGGGTCAGCCCTGCTGGTTCAGGCTGCCAAAGATTGGCATGATTGCTGTGAATGATGGCATACTACTTCGCAACCATATCCCGAGAATTCTCAAAAAGCACTTTAGGGGAAAGCCCTACTATGTGGATCTGCTGGATTTATTCAATGAGGTTGAGTTTCAAACAGCTCATGGACAATTGATTGATTTAATTACCACTCATGAAGGAGAGAAAGATCTATCAAAGTACTCATTGTCGCTTCACCGCCGCATTGTTCAGTACAAGACTGCGTATTACTCATTTTACCTTCCAGTAGCATGCGCGTTGCTAATGGCAGGCGAAGATCTTGAACGCCATGCTGATGTGAGGAATATTCTTATTGAAATGGGAACCTATTTTCAAGTACAGGATGATTATTTGGATTGCTTTGGTGATCCCGAAGTGATTGGAAAGGTTGGGACTGATATTCAAGACTTCAAGTGCTCTTGGTTGGTTGTGAAAGCTTTAGAAATTGCAAGTGAGGAACAAAAGAAACTATTACATGAGAATTACGGGAAAGATGACCAAACATGTATTGCGAAAGTAAAGGAATTATACAAAGTCCTTGATCTTGAGGGTGTGTTTCTGGAGTACGAGAGCAGCAGTTACGAGAAACTTACAAAATCCATTGAATCTCATTCAAGTAAAGCAGTACAGGCAGTGCTGAAATCATTCTTGGCAAAGATATACAAGAGGCAGAACTCCAGTGCAGATTCTGGCCCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

406

Amino Acids

46.41

Weight (kDa)

6.18

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccII	CGCG	1 cut(s)	773
AciI	CCGC	3 cut(s)	43, 715, 718
AclWI	GGATC	3 cut(s)	224, 606, 878
AcsI	RAATTY	3 cut(s)	242, 378, 558
AfaI	GTAC	5 cut(s)	698, 731, 855, 1082, 1143
AfiI	CCNNNNNNNGG	1 cut(s)	506
AflIII	ACRYGT	2 cut(s)	467, 1019
AjnI	CCWGG	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	1148, 1180
AluBI	AGCT	8 cut(s)	39, 100, 109, 220, 307, 336, 638, 953
AluI	AGCT	8 cut(s)	39, 100, 109, 220, 307, 336, 638, 953
Alw21I	GWGCWC	1 cut(s)	935
AlwI	GGATC	3 cut(s)	224, 606, 878
AlwNI	CAGNNNCTG	1 cut(s)	1205
Ama87I	CYCGRG	1 cut(s)	553
AoxI	GGCC	1 cut(s)	1207
ApeKI	GCWGC	2 cut(s)	496, 1089
ApoI	RAATTY	3 cut(s)	242, 378, 558
Asp700I	GAANNNNTTC	3 cut(s)	381, 417, 1160
AspLEI	GCGC	1 cut(s)	773
AspS9I	GGNCC	2 cut(s)	361, 1208
AsuC2I	CCSGG	1 cut(s)	1211
AsuHPI	GGTGA	4 cut(s)	182, 238, 704, 893
AsuII	TTCGAA	1 cut(s)	240
AvaI	CYCGRG	1 cut(s)	553
AvaII	GGWCC	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	935
BbvI	GCAGC	2 cut(s)	483, 1101
BccI	CCATC	3 cut(s)	347, 449, 521
BciT130I	CCWGG	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	1211
BfaI	CTAG	1 cut(s)	156
BglII	AGATCT	2 cut(s)	685, 793
BisI	GCNGC	4 cut(s)	44, 497, 718, 1090
BlsI	GCNGC	4 cut(s)	45, 498, 719, 1091
BmcAI	AGTACT	1 cut(s)	698
Bme1390I	CCNGG	2 cut(s)	297, 1211
Bme18I	GGWCC	1 cut(s)	361
BmeT110I	CYCGRG	1 cut(s)	553
BmgT120I	GGNCC	2 cut(s)	361, 1208
BmiI	GGNNCC	1 cut(s)	841
BmrFI	CCNGG	2 cut(s)	297, 1211
BmsI	GCATC	2 cut(s)	59, 267
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpmI	CTGGAG	3 cut(s)	318, 1097, 1177
Bpu14I	TTCGAA	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	332, 1082
BpuMI	CCSGG	1 cut(s)	1211
BsaAI	YACGTR	1 cut(s)	470
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse1I	ACTGG	2 cut(s)	761, 1194
BseBI	CCWGG	1 cut(s)	297
BseGI	GGATG	5 cut(s)	282, 358, 376, 460, 865
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	761, 1194
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	483, 1101
BsgI	GTGCAG	1 cut(s)	1218
Bsh1236I	CGCG	1 cut(s)	773
BshFI	GGCC	1 cut(s)	1209
BsiHKAI	GWGCWC	1 cut(s)	935
BsiHKCI	CYCGRG	1 cut(s)	553
BsiSI	CCGG	2 cut(s)	233, 1211
BslFI	GGGAC	1 cut(s)	922
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	922
BsnI	GGCC	1 cut(s)	1209
BsoBI	CYCGRG	1 cut(s)	553
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	935
Bsp143I	GATC	6 cut(s)	229, 598, 685, 793, 883, 1057
BspACI	CCGC	3 cut(s)	43, 715, 718
BspANI	GGCC	1 cut(s)	1209
BspCNI	CTCAG	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	773
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	1 cut(s)	841
BspPI	GGATC	3 cut(s)	224, 606, 878
BspT104I	TTCGAA	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	761, 1194
BssMI	GATC	6 cut(s)	229, 598, 685, 793, 883, 1057
Bst2UI	CCWGG	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	4 cut(s)	41, 48, 769, 787
BstDEI	CTNAG	3 cut(s)	183, 216, 1215
BstF5I	GGATG	5 cut(s)	282, 358, 376, 460, 865
BstFNI	CGCG	1 cut(s)	773
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	6 cut(s)	232, 601, 688, 796, 886, 1060
BstMBI	GATC	6 cut(s)	229, 598, 685, 793, 883, 1057
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 1145
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	2 cut(s)	771, 1023
BstSCI	CCNGG	2 cut(s)	295, 1209
BstUI	CGCG	1 cut(s)	773
BstV1I	GCAGC	2 cut(s)	483, 1101
BstX2I	RGATCY	3 cut(s)	598, 685, 793
BstYI	RGATCY	3 cut(s)	598, 685, 793
BsuRI	GGCC	1 cut(s)	1209
BtsCI	GGATG	5 cut(s)	282, 358, 376, 460, 865
BtsI	GCAGTG	1 cut(s)	1155
BtsIMutI	CAGTG	2 cut(s)	1155, 1201
Cac8I	GCNNGC	4 cut(s)	41, 48, 769, 787
CaiI	CAGNNNCTG	1 cut(s)	1205
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	1 cut(s)	773
Cfr13I	GGNCC	2 cut(s)	361, 1208
Csp6I	GTAC	5 cut(s)	697, 730, 854, 1081, 1142
CviAII	CATG	8 cut(s)	451, 511, 641, 671, 768, 806, 992, 1020
CviQI	GTAC	5 cut(s)	697, 730, 854, 1081, 1142
DdeI	CTNAG	3 cut(s)	183, 216, 1215
DpnI	GATC	6 cut(s)	231, 600, 687, 795, 885, 1059
DpnII	GATC	6 cut(s)	229, 598, 685, 793, 883, 1057
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	361
Eco88I	CYCGRG	1 cut(s)	553
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRI	GAATTC	2 cut(s)	242, 558
EcoRII	CCWGG	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	448
FaeI	CATG	8 cut(s)	454, 514, 644, 674, 771, 809, 995, 1023
FaqI	GGGAC	1 cut(s)	922
FatI	CATG	8 cut(s)	450, 510, 640, 670, 767, 805, 991, 1019
Fnu4HI	GCNGC	4 cut(s)	44, 497, 718, 1090
FokI	GGATG	5 cut(s)	289, 365, 383, 467, 872
Fsp4HI	GCNGC	4 cut(s)	44, 497, 718, 1090
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	772
GluI	GCNGC	4 cut(s)	44, 497, 718, 1090
GsuI	CTGGAG	3 cut(s)	318, 1097, 1177
HaeIII	GGCC	1 cut(s)	1209
HapII	CCGG	2 cut(s)	233, 1211
HhaI	GCGC	1 cut(s)	773
Hin1II	CATG	8 cut(s)	454, 514, 644, 674, 771, 809, 995, 1023
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	2 cut(s)	37, 951
HinfI	GANTC	3 cut(s)	310, 1121, 1202
HpaII	CCGG	2 cut(s)	233, 1211
HphI	GGTGA	4 cut(s)	182, 238, 704, 893
Hpy166II	GTNNAC	2 cut(s)	199, 331
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	9 cut(s)	156, 440, 553, 671, 797, 887, 920, 1061, 1076
Hpy8I	GTNNAC	2 cut(s)	199, 331
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	4 cut(s)	82, 88, 668, 767
HpyCH4IV	ACGT	2 cut(s)	252, 469
HpyCH4V	TGCA	2 cut(s)	965, 1199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 1145
HpyF3I	CTNAG	3 cut(s)	183, 216, 1215
HpySE526I	ACGT	2 cut(s)	252, 469
Hsp92II	CATG	8 cut(s)	454, 514, 644, 674, 771, 809, 995, 1023
HspAI	GCGC	1 cut(s)	771
Kzo9I	GATC	6 cut(s)	229, 598, 685, 793, 883, 1057
Lsp1109I	GCAGC	2 cut(s)	483, 1101
LweI	GCATC	2 cut(s)	59, 267
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	2 cut(s)	252, 469
MaeIII	GTNAC	1 cut(s)	1094
MalI	GATC	6 cut(s)	231, 600, 687, 795, 885, 1059
MboI	GATC	6 cut(s)	229, 598, 685, 793, 883, 1057
MboII	GAAGA	1 cut(s)	803
MfeI	CAATTG	1 cut(s)	647
MflI	RGATCY	3 cut(s)	598, 685, 793
MhlI	GDGCHC	1 cut(s)	935
MluCI	AATT	9 cut(s)	242, 341, 378, 558, 647, 660, 960, 997, 1040
MroXI	GAANNNNTTC	3 cut(s)	381, 417, 1160
MseI	TTAA	2 cut(s)	338, 659
MslI	CAYNNNNRTG	1 cut(s)	810
MspI	CCGG	2 cut(s)	233, 1211
MspR9I	CCNGG	2 cut(s)	297, 1211
MunI	CAATTG	1 cut(s)	647
MvaI	CCWGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	773
MwoI	GCNNNNNNNGC	2 cut(s)	106, 1145
NciI	CCSGG	1 cut(s)	1211
NdeII	GATC	6 cut(s)	229, 598, 685, 793, 883, 1057
NlaIII	CATG	8 cut(s)	454, 514, 644, 674, 771, 809, 995, 1023
NlaIV	GGNNCC	1 cut(s)	841
NspI	RCATGY	2 cut(s)	771, 1023
NspV	TTCGAA	1 cut(s)	240
PaeI	GCATGC	1 cut(s)	771
PagI	TCATGA	1 cut(s)	670
PciI	ACATGT	1 cut(s)	1019
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PdmI	GAANNNNTTC	3 cut(s)	381, 417, 1160
PfeI	GAWTC	3 cut(s)	310, 1121, 1202
PflMI	CCANNNNNTGG	1 cut(s)	506
PkrI	GCNGC	4 cut(s)	45, 498, 719, 1091
Ppu21I	YACGTR	1 cut(s)	470
PpuMI	RGGWCCY	1 cut(s)	361
PscI	ACATGT	1 cut(s)	1019
Psp5II	RGGWCCY	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	841
PspPI	GGNCC	2 cut(s)	361, 1208
PspPPI	RGGWCCY	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	1205
PsuI	RGATCY	3 cut(s)	598, 685, 793
RsaI	GTAC	5 cut(s)	698, 731, 855, 1082, 1143
RsaNI	GTAC	5 cut(s)	697, 730, 854, 1081, 1142
RseI	CAYNNNNRTG	1 cut(s)	810
SaqAI	TTAA	2 cut(s)	338, 659
SatI	GCNGC	4 cut(s)	44, 497, 718, 1090
Sau3AI	GATC	6 cut(s)	229, 598, 685, 793, 883, 1057
Sau96I	GGNCC	2 cut(s)	361, 1208
ScaI	AGTACT	1 cut(s)	698
ScrFI	CCNGG	2 cut(s)	297, 1211
SduI	GDGCHC	1 cut(s)	935
SfaNI	GCATC	2 cut(s)	59, 267
SfuI	TTCGAA	1 cut(s)	240
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	810
SmlI	CTYRAG	2 cut(s)	347, 1061
SmoI	CTYRAG	2 cut(s)	347, 1061
SphI	GCATGC	1 cut(s)	771
Sse9I	AATT	9 cut(s)	242, 341, 378, 558, 647, 660, 960, 997, 1040
SsiI	CCGC	3 cut(s)	43, 715, 718
SspI	AATATT	1 cut(s)	823
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	295, 1209
TaiI	ACGT	2 cut(s)	255, 472
TaqI	TCGA	3 cut(s)	240, 270, 313
TasI	AATT	9 cut(s)	242, 341, 378, 558, 647, 660, 960, 997, 1040
TatI	WGTACW	4 cut(s)	696, 729, 853, 1141
TauI	GCSGC	2 cut(s)	46, 720
TfiI	GAWTC	3 cut(s)	310, 1121, 1202
Tru1I	TTAA	2 cut(s)	338, 659
Tru9I	TTAA	2 cut(s)	338, 659
TscAI	CASTG	2 cut(s)	1155, 1201
TseI	GCWGC	2 cut(s)	496, 1089
TspDTI	ATGAA	4 cut(s)	374, 378, 390, 687
TspGWI	ACGGA	3 cut(s)	289, 313, 383
TspRI	CASTG	2 cut(s)	1155, 1201
Van91I	CCANNNNNTGG	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	3 cut(s)	242, 378, 558
XbaI	TCTAGA	1 cut(s)	155
XceI	RCATGY	2 cut(s)	771, 1023
XmnI	GAANNNNTTC	3 cut(s)	381, 417, 1160
XspI	CTAG	1 cut(s)	156
ZrmI	AGTACT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.