Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Forward (+)

3180305 .. 3184669

Gene Structure 4365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1036800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGTGATTTGAGGTCTAAGTTCTTGGGCGTTTACTCTGTTTTGAAATCTGAGCTTCTCAATGATCCGGCCTTCGAATTCACGGACGTTTCTCGTCAATGGGTCGAACGGATGCTGGACTACACTGTGCCAGGAGGAAAGTTGAATCGAGGTTTATCCGTTGTTGACAGCTTAAAATTACTCAAGGATGGAAAGGACCTAACGGATGATGAATTTTTTCATTCATCCGCACTTGGATGGTGTATTGAATGGCTTCAAGCATATTTTCTTGTTCTTGATGATATCATGGATGGCTCTCATACACGTAGGGGTCAGCAGTGCTGGTTCAGACTACCAAAGATTGGCATGATTGCTGTGAATGATGGCATACTACTTCGCAACCATATCCCACGAGTTCTCAAAAAGCACTTTAGGGGAAAGCCCTACTATGTGGATCTGCTGGATTTATTTAATGAGGTGGAGTTTCAAACAGCTCATGGACAATTGATAGATTTAATTACCACTCATGAAGGAGAGAAAGATCTATCAAAGTACTCATTGTCGCTTCACCGCCGCATTGTTCAGTACAAGACCGCTTATTACTCTTTTTACCTTCCAGTAGCATGCGCGTTGCTAATGGCAGGCGAAGATCTTGAACGCCATGCTGATGTGAAGACTATTCTTATTGAAATGGGAACTTATTTTCAAGTACAGGATGATTATTTGGATTGTTTTGGTGAGCCCGAAGTGATAGGAAAGGTTGGGACTGATATTCAAGACTTCAAGTGCTCTTGGTTGGTTGTGAAAGCTTTAGAAATTGCTAGTGAGGAACAAAAGAAACTATTACACGAGAATTATGGGAAAGATGACGAAACATGTATTGCAAAAGTAAAAGAACTATACAAAGTCCTTGATCTTGAGGGTGTGTTTCTGGAGTATGAGAGCAGCAGTTACCAGAAACTTACAAAATTGATTGAATCTCATTCAAGTAAAGCAGTACAGGCAGTGCTGAAATCATTCTTGGCAAAGATATACAAGAGGCAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

343

Amino Acids

39.42

Weight (kDa)

5.85

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	33 - 296	8.1e-79	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccII	CGCG	1 cut(s)	608
AciI	CCGC	4 cut(s)	228, 550, 553, 573
AclWI	GGATC	2 cut(s)	59, 441
AcsI	RAATTY	2 cut(s)	77, 212
AfaI	GTAC	4 cut(s)	533, 566, 690, 978
AfiI	CCNNNNNNNGG	1 cut(s)	341
AflIII	ACRYGT	2 cut(s)	302, 854
AjnI	CCWGG	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	983, 1015
AluBI	AGCT	4 cut(s)	55, 171, 473, 788
AluI	AGCT	4 cut(s)	55, 171, 473, 788
Alw21I	GWGCWC	1 cut(s)	770
AlwI	GGATC	2 cut(s)	59, 441
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	924
ApoI	RAATTY	2 cut(s)	77, 212
Asp700I	GAANNNNTTC	3 cut(s)	216, 252, 995
AspLEI	GCGC	1 cut(s)	608
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	3 cut(s)	17, 539, 728
AsuII	TTCGAA	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	723
BauI	CACGAG	2 cut(s)	390, 827
BbsI	GAAGAC	1 cut(s)	659
Bbv12I	GWGCWC	1 cut(s)	770
BbvI	GCAGC	1 cut(s)	936
BccI	CCATC	4 cut(s)	182, 231, 284, 356
BciT130I	CCWGG	1 cut(s)	132
BfaI	CTAG	1 cut(s)	801
BglII	AGATCT	2 cut(s)	520, 628
BisI	GCNGC	2 cut(s)	553, 925
BlsI	GCNGC	2 cut(s)	554, 926
BmcAI	AGTACT	1 cut(s)	533
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	659
BpmI	CTGGAG	1 cut(s)	932
Bpu14I	TTCGAA	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	167, 917
BsaAI	YACGTR	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	596
BseBI	CCWGG	1 cut(s)	132
BseGI	GGATG	7 cut(s)	117, 193, 211, 224, 242, 295, 700
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	596
BseXI	GCAGC	1 cut(s)	936
Bsh1236I	CGCG	1 cut(s)	608
BshFI	GGCC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	770
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	757
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	757
BsnI	GGCC	1 cut(s)	71
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	723, 770
Bsp143I	GATC	5 cut(s)	64, 433, 520, 628, 892
BspACI	CCGC	4 cut(s)	228, 550, 553, 573
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	608
BspHI	TCATGA	1 cut(s)	505
BspPI	GGATC	2 cut(s)	59, 441
BspT104I	TTCGAA	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	596
BssMI	GATC	5 cut(s)	64, 433, 520, 628, 892
BssSI	CACGAG	2 cut(s)	390, 827
Bst2BI	CACGAG	2 cut(s)	390, 827
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	127
BstBAI	YACGTR	1 cut(s)	305
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	2 cut(s)	604, 622
BstDEI	CTNAG	2 cut(s)	18, 51
BstF5I	GGATG	7 cut(s)	117, 193, 211, 224, 242, 295, 700
BstFNI	CGCG	1 cut(s)	608
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	5 cut(s)	67, 436, 523, 631, 895
BstMBI	GATC	5 cut(s)	64, 433, 520, 628, 892
BstMWI	GCNNNNNNNGC	1 cut(s)	980
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	2 cut(s)	606, 858
BstSCI	CCNGG	1 cut(s)	130
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	1 cut(s)	936
BstV2I	GAAGAC	1 cut(s)	659
BstX2I	RGATCY	3 cut(s)	433, 520, 628
BstYI	RGATCY	3 cut(s)	433, 520, 628
BsuRI	GGCC	1 cut(s)	71
BtsCI	GGATG	7 cut(s)	117, 193, 211, 224, 242, 295, 700
BtsI	GCAGTG	2 cut(s)	323, 990
BtsIMutI	CAGTG	3 cut(s)	123, 323, 990
Cac8I	GCNNGC	2 cut(s)	604, 622
CciI	TCATGA	1 cut(s)	505
CfoI	GCGC	1 cut(s)	608
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	4 cut(s)	532, 565, 689, 977
CviAII	CATG	7 cut(s)	286, 346, 476, 506, 603, 641, 855
CviJI	RGCY	9 cut(s)	55, 71, 171, 253, 294, 421, 473, 721, 788
CviKI_1	RGCY	9 cut(s)	55, 71, 171, 253, 294, 421, 473, 721, 788
CviQI	GTAC	4 cut(s)	532, 565, 689, 977
DdeI	CTNAG	2 cut(s)	18, 51
DpnI	GATC	5 cut(s)	66, 435, 522, 630, 894
DpnII	GATC	5 cut(s)	64, 433, 520, 628, 892
Eco24I	GRGCYC	1 cut(s)	723
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	196
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	723
FaeI	CATG	7 cut(s)	289, 349, 479, 509, 606, 644, 858
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	7 cut(s)	285, 345, 475, 505, 602, 640, 854
Fnu4HI	GCNGC	2 cut(s)	553, 925
FokI	GGATG	7 cut(s)	124, 200, 211, 218, 249, 302, 707
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	2 cut(s)	553, 925
FspBI	CTAG	1 cut(s)	801
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	2 cut(s)	553, 925
GsuI	CTGGAG	1 cut(s)	932
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	68
HhaI	GCGC	1 cut(s)	608
Hin1II	CATG	7 cut(s)	289, 349, 479, 509, 606, 644, 858
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	786
HinfI	GANTC	2 cut(s)	145, 956
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	3 cut(s)	17, 539, 728
Hpy166II	GTNNAC	2 cut(s)	34, 166
Hpy188I	TCNGA	2 cut(s)	52, 329
Hpy188III	TCNNGA	6 cut(s)	275, 506, 632, 755, 896, 911
Hpy8I	GTNNAC	2 cut(s)	34, 166
HpyAV	CCTTC	3 cut(s)	82, 503, 602
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	2 cut(s)	87, 304
HpyCH4V	TGCA	1 cut(s)	863
HpyF10VI	GCNNNNNNNGC	1 cut(s)	980
HpyF3I	CTNAG	2 cut(s)	18, 51
HpySE526I	ACGT	2 cut(s)	87, 304
Hsp92II	CATG	7 cut(s)	289, 349, 479, 509, 606, 644, 858
HspAI	GCGC	1 cut(s)	606
Kzo9I	GATC	5 cut(s)	64, 433, 520, 628, 892
Lsp1109I	GCAGC	1 cut(s)	936
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	801
MaeII	ACGT	2 cut(s)	87, 304
MaeIII	GTNAC	1 cut(s)	929
MalI	GATC	5 cut(s)	66, 435, 522, 630, 894
MboI	GATC	5 cut(s)	64, 433, 520, 628, 892
MboII	GAAGA	2 cut(s)	638, 664
MfeI	CAATTG	1 cut(s)	482
MflI	RGATCY	3 cut(s)	433, 520, 628
MhlI	GDGCHC	2 cut(s)	723, 770
MluCI	AATT	8 cut(s)	77, 176, 212, 482, 495, 795, 832, 947
MnlI	CCTC	7 cut(s)	6, 128, 143, 448, 799, 892, 1011
MroXI	GAANNNNTTC	3 cut(s)	216, 252, 995
MseI	TTAA	3 cut(s)	173, 450, 494
MslI	CAYNNNNRTG	2 cut(s)	235, 645
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	1 cut(s)	980
NdeII	GATC	5 cut(s)	64, 433, 520, 628, 892
NlaIII	CATG	7 cut(s)	289, 349, 479, 509, 606, 644, 858
NspI	RCATGY	2 cut(s)	606, 858
NspV	TTCGAA	1 cut(s)	75
PaeI	GCATGC	1 cut(s)	606
PagI	TCATGA	1 cut(s)	505
PciI	ACATGT	1 cut(s)	854
PdmI	GAANNNNTTC	3 cut(s)	216, 252, 995
PfeI	GAWTC	2 cut(s)	145, 956
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	554, 926
Ppu21I	YACGTR	1 cut(s)	305
PpuMI	RGGWCCY	1 cut(s)	196
PscI	ACATGT	1 cut(s)	854
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	196
PspPPI	RGGWCCY	1 cut(s)	196
PsuI	RGATCY	3 cut(s)	433, 520, 628
RsaI	GTAC	4 cut(s)	533, 566, 690, 978
RsaNI	GTAC	4 cut(s)	532, 565, 689, 977
RseI	CAYNNNNRTG	2 cut(s)	235, 645
SaqAI	TTAA	3 cut(s)	173, 450, 494
SatI	GCNGC	2 cut(s)	553, 925
Sau3AI	GATC	5 cut(s)	64, 433, 520, 628, 892
Sau96I	GGNCC	1 cut(s)	196
ScaI	AGTACT	1 cut(s)	533
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	2 cut(s)	723, 770
SfaNI	GCATC	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	75
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	2 cut(s)	235, 645
SmlI	CTYRAG	2 cut(s)	182, 896
SmoI	CTYRAG	2 cut(s)	182, 896
SphI	GCATGC	1 cut(s)	606
Sse9I	AATT	8 cut(s)	77, 176, 212, 482, 495, 795, 832, 947
SsiI	CCGC	4 cut(s)	228, 550, 553, 573
SspMI	CTAG	1 cut(s)	801
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	2 cut(s)	90, 307
TaqI	TCGA	3 cut(s)	75, 105, 148
TasI	AATT	8 cut(s)	77, 176, 212, 482, 495, 795, 832, 947
TatI	WGTACW	4 cut(s)	531, 564, 688, 976
TauI	GCSGC	1 cut(s)	555
TfiI	GAWTC	2 cut(s)	145, 956
Tru1I	TTAA	3 cut(s)	173, 450, 494
Tru9I	TTAA	3 cut(s)	173, 450, 494
TscAI	CASTG	3 cut(s)	130, 323, 990
TseI	GCWGC	1 cut(s)	924
TspDTI	ATGAA	4 cut(s)	209, 213, 225, 522
TspGWI	ACGGA	4 cut(s)	98, 124, 148, 218
TspRI	CASTG	3 cut(s)	130, 323, 990
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	2 cut(s)	77, 212
XceI	RCATGY	2 cut(s)	606, 858
XmnI	GAANNNNTTC	3 cut(s)	216, 252, 995
XspI	CTAG	1 cut(s)	801
ZrmI	AGTACT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.