Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Forward (+)

96405441 .. 96408868

Gene Structure 3428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCGGATCTCAAGTCAAAGTTCCTGAACGTCTACTCTGTTCTGAAATCGGAGCTCTTGGAAGACCCTGCTTTCGAATTCACTGACGCCTCTCGTCAATGGGTCGAACGGATGCTGGACTACAATGTGCCCGGAGGAAAGCTGAATCGCGGACTGTCGGTTATTGACAGCTACCAGTTGTTGCAACAAGGAAGGGAACTGACTGAAGATGAAATCTTCCAAGCCAGCGCTCTTGGTTGGTGCATCGAATGGCTCCAAGCATTTTTTCTGGTTCTCGATGACATGATGGATGGCTCTCACACACGGCGTGGCCAACCTTGCTGGTTTAGATTGCCCAAGGTTGGTTTGATTGCAGCAAATGATGGGGTTCTACTCAGAAACCATATTCCAAGGATCCTCAAGAAGCACTTTAGGCAAAAGCCATATTACGTGGATCTTGTTGATTTGTTCAATGAGGTGGAGTTTCAAACCGCTTCAGGTCAGCTGATAGATTTGATCACTACCATTGACGGAGAAAAAGATCTTTCCAAATACTCATTGTCAATTCACCGCCGTATTGTTCAGTACAAGACTGCCTATTACTCATTTTACCTTTCAGTTGCATGTGCATTGCTTATGTCAGGTGAGGAACTGGACAAGCATATTGATGTAAAGAATCTTCTTGTTGATATGGGGATCTACTTTCAAGTACAGGATGATTATTTGGATTGTTTTGGTGATCCAGAAACAATTGGAAAGATAGGAACAGATATTGAAGATTTCAAGTGCTCTTGGTTGGTTGTGAAAGCTTTGGAACTTAGCAATGAGGAACAGAAGAAAATACTACATGAGAACTATGGCAACCCTGACCCAGCAAAGGTCGCCAAAGTAAAGGCCCTTTACAAAGAACTGGATCTTCAGGGTGTATTTGCGGAGTATGAGAGGCAAAGCTACGAGAAACTGATAAGTTCCATTGAAGCTCATCCTAGCAAAGCAGTGCAAGAAGTGTTGAAGTCCTTCTTGGGTAAGATTTACAAGAGGAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

342

Amino Acids

39.42

Weight (kDa)

5.52

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	33 - 297	5.7e-79	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	150
AciI	CCGC	5 cut(s)	5, 150, 471, 550, 911
AclWI	GGATC	7 cut(s)	15, 388, 401, 441, 683, 713, 900
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	3 cut(s)	225, 459, 881
AcyI	GRCGYC	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	2 cut(s)	566, 690
AfeI	AGCGCT	1 cut(s)	229
AfiI	CCNNNNNNNGG	2 cut(s)	341, 856
AgsI	TTSAA	7 cut(s)	451, 467, 686, 755, 763, 956, 991
AjuI	GAANNNNNNNTTGG	4 cut(s)	249, 281, 983, 1015
AluBI	AGCT	7 cut(s)	55, 142, 171, 484, 788, 930, 959
AluI	AGCT	7 cut(s)	55, 142, 171, 484, 788, 930, 959
Alw21I	GWGCWC	2 cut(s)	57, 770
AlwI	GGATC	7 cut(s)	15, 388, 401, 441, 683, 713, 900
Aor51HI	AGCGCT	1 cut(s)	229
AoxI	GGCC	2 cut(s)	310, 873
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	77
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
Asp700I	GAANNNNTTC	1 cut(s)	995
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	874
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	3 cut(s)	539, 635, 728
AsuII	TTCGAA	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	132
BalI	TGGCCA	1 cut(s)	312
BamHI	GGATCC	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	57
BarI	GAAGNNNNNNTAC	2 cut(s)	642, 674
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	57, 770
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	3 cut(s)	280, 284, 356
BceAI	ACGGC	2 cut(s)	320, 537
BclI	TGATCA	1 cut(s)	495
BcnI	CCSGG	1 cut(s)	132
BfaI	CTAG	1 cut(s)	966
BfoI	RGCGCY	1 cut(s)	231
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	874
BmiI	GGNNCC	2 cut(s)	254, 395
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	2 cut(s)	102, 252
BpiI	GAAGAC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	430
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	336, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 856
Bse1I	ACTGG	3 cut(s)	175, 636, 894
Bse3DI	GCAATG	2 cut(s)	608, 808
BseDI	CCNNGG	2 cut(s)	336, 389
BseGI	GGATG	4 cut(s)	117, 295, 700, 961
BseLI	CCNNNNNNNGG	2 cut(s)	341, 856
BseMI	GCAATG	2 cut(s)	608, 808
BseMII	CTCAG	1 cut(s)	388
BseNI	ACTGG	3 cut(s)	175, 636, 894
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	365
BseYI	CCCAGC	1 cut(s)	850
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	2 cut(s)	312, 875
BsiHKAI	GWGCWC	2 cut(s)	57, 770
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	2 cut(s)	341, 856
BsnI	GGCC	2 cut(s)	312, 875
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	3 cut(s)	57, 132, 770
Bsp143I	GATC	8 cut(s)	7, 393, 433, 495, 520, 675, 718, 892
BspACI	CCGC	5 cut(s)	5, 150, 471, 550, 911
BspANI	GGCC	2 cut(s)	312, 875
BspCNI	CTCAG	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	254, 395
BspPI	GGATC	7 cut(s)	15, 388, 401, 441, 683, 713, 900
BspT104I	TTCGAA	1 cut(s)	75
BsrDI	GCAATG	2 cut(s)	608, 808
BsrI	ACTGG	3 cut(s)	175, 636, 894
BssECI	CCNNGG	2 cut(s)	336, 389
BssMI	GATC	8 cut(s)	7, 393, 433, 495, 520, 675, 718, 892
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	2 cut(s)	336, 389
Bst4CI	ACNGT	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	430
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	2 cut(s)	374, 797
BstF5I	GGATG	4 cut(s)	117, 295, 700, 961
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	8 cut(s)	10, 396, 436, 498, 523, 678, 721, 895
BstMBI	GATC	8 cut(s)	7, 393, 433, 495, 520, 675, 718, 892
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 412, 860
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	132
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	6 cut(s)	7, 393, 433, 520, 675, 892
BstYI	RGATCY	6 cut(s)	7, 393, 433, 520, 675, 892
BsuRI	GGCC	2 cut(s)	312, 875
BtsCI	GGATG	4 cut(s)	117, 295, 700, 961
BtsI	GCAGTG	1 cut(s)	981
BtsIMutI	CAGTG	2 cut(s)	81, 981
Cac8I	GCNNGC	1 cut(s)	226
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	874
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	565, 689
CviAII	CATG	3 cut(s)	283, 603, 827
CviQI	GTAC	2 cut(s)	565, 689
DdeI	CTNAG	2 cut(s)	374, 797
DpnI	GATC	8 cut(s)	9, 395, 435, 497, 522, 677, 720, 894
DpnII	GATC	8 cut(s)	7, 393, 433, 495, 520, 675, 718, 892
DraIII	CACNNNGTG	1 cut(s)	308
EaeI	YGGCCR	1 cut(s)	310
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	336, 389
Eco24I	GRGCYC	1 cut(s)	57
Eco47III	AGCGCT	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	3 cut(s)	225, 459, 881
EcoICRI	GAGCTC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	874
EcoRI	GAATTC	1 cut(s)	77
EcoT14I	CCWWGG	2 cut(s)	336, 389
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	2 cut(s)	336, 389
FaeI	CATG	3 cut(s)	286, 606, 830
FalI	AAGNNNNNCTT	4 cut(s)	392, 424, 983, 1015
FatI	CATG	3 cut(s)	282, 602, 826
FbaI	TGATCA	1 cut(s)	495
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	4 cut(s)	124, 302, 707, 948
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	966
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	354
GsaI	CCCAGC	1 cut(s)	854
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	312, 875
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	3 cut(s)	286, 606, 830
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	786
HinfI	GANTC	2 cut(s)	145, 655
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	3 cut(s)	539, 635, 728
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	45, 52, 377
Hpy188III	TCNNGA	4 cut(s)	25, 275, 400, 722
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	186, 1006
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	2 cut(s)	30, 429
HpyCH4V	TGCA	6 cut(s)	184, 243, 353, 602, 608, 979
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 412, 860
HpyF3I	CTNAG	2 cut(s)	374, 797
HpySE526I	ACGT	2 cut(s)	30, 429
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	286, 606, 830
HspAI	GCGC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	8 cut(s)	7, 393, 433, 495, 520, 675, 718, 892
LmnI	GCTCC	2 cut(s)	52, 258
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	2 cut(s)	102, 252
MaeI	CTAG	1 cut(s)	966
MaeII	ACGT	2 cut(s)	30, 429
MalI	GATC	8 cut(s)	9, 395, 435, 497, 522, 677, 720, 894
MboI	GATC	8 cut(s)	7, 393, 433, 495, 520, 675, 718, 892
MboII	GAAGA	7 cut(s)	74, 208, 218, 650, 767, 826, 887
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	6 cut(s)	7, 393, 433, 520, 675, 892
MhlI	GDGCHC	3 cut(s)	57, 132, 770
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	3 cut(s)	77, 543, 729
MluNI	TGGCCA	1 cut(s)	312
MnlI	CCTC	8 cut(s)	100, 128, 407, 448, 619, 799, 915, 1011
Mox20I	TGGCCA	1 cut(s)	312
MroXI	GAANNNNTTC	1 cut(s)	995
MscI	TGGCCA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	645
Msp20I	TGGCCA	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	484
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	729
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	3 cut(s)	318, 412, 860
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	8 cut(s)	7, 393, 433, 495, 520, 675, 718, 892
NlaIII	CATG	3 cut(s)	286, 606, 830
NlaIV	GGNNCC	2 cut(s)	254, 395
NspI	RCATGY	1 cut(s)	606
NspV	TTCGAA	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	995
PfeI	GAWTC	2 cut(s)	145, 655
PkrI	GCNGC	1 cut(s)	355
Ppu21I	YACGTR	1 cut(s)	430
Psp124BI	GAGCTC	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	850
PspN4I	GGNNCC	2 cut(s)	254, 395
PspPI	GGNCC	1 cut(s)	874
PsuI	RGATCY	6 cut(s)	7, 393, 433, 520, 675, 892
PvuII	CAGCTG	1 cut(s)	484
RsaI	GTAC	2 cut(s)	566, 690
RsaNI	GTAC	2 cut(s)	565, 689
RseI	CAYNNNNRTG	1 cut(s)	645
SacI	GAGCTC	1 cut(s)	57
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	8 cut(s)	7, 393, 433, 495, 520, 675, 718, 892
Sau96I	GGNCC	1 cut(s)	874
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	3 cut(s)	57, 132, 770
SfaNI	GCATC	2 cut(s)	102, 252
SfuI	TTCGAA	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	2 cut(s)	11, 398
SmoI	CTYRAG	2 cut(s)	11, 398
Sse9I	AATT	3 cut(s)	77, 543, 729
SsiI	CCGC	5 cut(s)	5, 150, 471, 550, 911
SspMI	CTAG	1 cut(s)	966
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	2 cut(s)	336, 389
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	2 cut(s)	33, 432
TaqI	TCGA	4 cut(s)	75, 105, 246, 276
TasI	AATT	3 cut(s)	77, 543, 729
TatI	WGTACW	2 cut(s)	564, 688
TfiI	GAWTC	2 cut(s)	145, 655
TscAI	CASTG	2 cut(s)	88, 981
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	2 cut(s)	124, 525
TspRI	CASTG	2 cut(s)	88, 981
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	995
XspI	CTAG	1 cut(s)	966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.