Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Reverse (-)

206778 .. 210547

Gene Structure 3770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG002400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCTGGACTACAATGTGCCCGGAGGAAAGCTGAATCGTGGACTGTCGGTTATTGACAGCTACCAGTTGTTGCAACAAGGAAGGGAACTGACTGAAGATGAAATCTTCCAAGCCAGCGCTCTTGGTTGGTGCATCGAATGGCTCCAAGCATTTTTTCTGGTTCTCGATGACATGATGGATGGCTCTCACACACGGCGTGGCCAACTTTGCTGGTTTAGATTGCCCAAGGTTGGTTTGATTGCAGCAAATGATGGAGTTCTACTTAGAAACCATATTCCAAGGATTCTCAAGAAGCACTTTAGGCAAAAGCCATATTACGTGGATCTTGTTGATTTGTTCAATGAGGTGGAGTTTCAAACAGCTTCAGGTCAGCTGATAGATTTGATCACTACCATTGACGGAGAAAAAGATCTATCCAAATACTCATTGTCAATTCACCGCCGTATTGTTCAGTACAAGACTGCGTATTACTCATTTTACCTTTCAGTTGCATGTGCATTGCTTATGTCAGGTGAGGAACTGGACAAGCATATTGATGTAAAGAATCTTCTTGTTGATATGGGGATCTACTTTCAAGTACAGGATGATTATTTGGATTGTTTTGGTGATCCAGAAACAATTGGAAAGATAGGAACAGATATTGAAGATTTCAAGTGCTCTTGGTTGGTTGTGAAAGCTTTGGAACTTAGCAATGAGGAACAGAAGAAAATACTACATGAGAACTATGGCAACCCTGACCCAGCAAAGGTCGCCAAAGTAAAGGCCCTTTACAAAGAACTCGATCTTCAGGGTGTATTTGCGGAGTATGAGAGGCAAAGCTACGAGAAACTGATTAGTTCCATTGAAGCTCATCCTAGCAAAGCAGTGCAAGAAGTGTTGAAGTCCTTCTTGGGTAAGATTTACAAGAGGAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

305

Amino Acids

35.09

Weight (kDa)

5.72

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	1 - 260	3.7e-76	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	439, 800
AclWI	GGATC	3 cut(s)	330, 572, 602
AcoI	YGGCCR	1 cut(s)	199
AcuI	CTGAAG	3 cut(s)	114, 348, 770
AdeI	CACNNNGTG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	455, 579
AfeI	AGCGCT	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	230, 745
AgsI	TTSAA	7 cut(s)	340, 356, 575, 644, 652, 845, 880
AjuI	GAANNNNNNNTTGG	4 cut(s)	138, 170, 872, 904
AluBI	AGCT	7 cut(s)	31, 60, 362, 373, 677, 819, 848
AluI	AGCT	7 cut(s)	31, 60, 362, 373, 677, 819, 848
Alw21I	GWGCWC	1 cut(s)	659
AlwI	GGATC	3 cut(s)	330, 572, 602
Aor51HI	AGCGCT	1 cut(s)	118
AoxI	GGCC	2 cut(s)	199, 762
ApeKI	GCWGC	1 cut(s)	242
Asp700I	GAANNNNTTC	1 cut(s)	884
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	763
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	3 cut(s)	428, 524, 617
BaeGI	GKGCMC	1 cut(s)	21
BalI	TGGCCA	1 cut(s)	201
BarI	GAAGNNNNNNTAC	2 cut(s)	531, 563
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	3 cut(s)	169, 173, 245
BceAI	ACGGC	2 cut(s)	209, 426
BclI	TGATCA	1 cut(s)	384
BcnI	CCSGG	1 cut(s)	21
BfaI	CTAG	1 cut(s)	855
BfoI	RGCGCY	1 cut(s)	120
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	763
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	21
BsaAI	YACGTR	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	225, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 745
Bse1I	ACTGG	2 cut(s)	64, 525
Bse3DI	GCAATG	2 cut(s)	497, 697
BseDI	CCNNGG	2 cut(s)	225, 278
BseGI	GGATG	3 cut(s)	184, 589, 850
BseLI	CCNNNNNNNGG	2 cut(s)	230, 745
BseMI	GCAATG	2 cut(s)	497, 697
BseNI	ACTGG	2 cut(s)	64, 525
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	254
BseYI	CCCAGC	1 cut(s)	739
BshFI	GGCC	2 cut(s)	201, 764
BsiHKAI	GWGCWC	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	230, 745
BsnI	GGCC	2 cut(s)	201, 764
Bsp1286I	GDGCHC	2 cut(s)	21, 659
Bsp143I	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
BspACI	CCGC	2 cut(s)	439, 800
BspANI	GGCC	2 cut(s)	201, 764
BspLI	GGNNCC	1 cut(s)	143
BspPI	GGATC	3 cut(s)	330, 572, 602
BsrDI	GCAATG	2 cut(s)	497, 697
BsrI	ACTGG	2 cut(s)	64, 525
BssECI	CCNNGG	2 cut(s)	225, 278
BssMI	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
BssT1I	CCWWGG	2 cut(s)	225, 278
Bst4CI	ACNGT	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	263, 686
BstF5I	GGATG	3 cut(s)	184, 589, 850
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	6 cut(s)	325, 387, 412, 567, 610, 784
BstMBI	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 301, 749
BstNSI	RCATGY	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	19
BstSLI	GKGCMC	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	254
BstX2I	RGATCY	3 cut(s)	322, 409, 564
BstYI	RGATCY	3 cut(s)	322, 409, 564
BsuRI	GGCC	2 cut(s)	201, 764
BtsCI	GGATG	3 cut(s)	184, 589, 850
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	1 cut(s)	870
Cac8I	GCNNGC	1 cut(s)	115
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	763
Csp6I	GTAC	2 cut(s)	454, 578
CviAII	CATG	3 cut(s)	172, 492, 716
CviQI	GTAC	2 cut(s)	454, 578
DdeI	CTNAG	2 cut(s)	263, 686
DpnI	GATC	6 cut(s)	324, 386, 411, 566, 609, 783
DpnII	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
DraIII	CACNNNGTG	1 cut(s)	197
EaeI	YGGCCR	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	225, 278
Eco47III	AGCGCT	1 cut(s)	118
Eco57I	CTGAAG	3 cut(s)	114, 348, 770
EcoO109I	RGGNCCY	1 cut(s)	763
EcoT14I	CCWWGG	2 cut(s)	225, 278
ErhI	CCWWGG	2 cut(s)	225, 278
FaeI	CATG	3 cut(s)	175, 495, 719
FalI	AAGNNNNNCTT	4 cut(s)	281, 313, 872, 904
FatI	CATG	3 cut(s)	171, 491, 715
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	3 cut(s)	191, 596, 837
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	855
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	243
GsaI	CCCAGC	1 cut(s)	743
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	201, 764
HapII	CCGG	1 cut(s)	21
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	3 cut(s)	175, 495, 719
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	675
HinfI	GANTC	3 cut(s)	34, 283, 544
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	3 cut(s)	428, 524, 617
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188III	TCNNGA	3 cut(s)	164, 289, 611
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	75, 895
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	6 cut(s)	73, 132, 242, 491, 497, 868
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 301, 749
HpyF3I	CTNAG	2 cut(s)	263, 686
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	175, 495, 719
HspAI	GCGC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
LmnI	GCTCC	1 cut(s)	147
Lsp1109I	GCAGC	1 cut(s)	254
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	855
MaeII	ACGT	1 cut(s)	318
MalI	GATC	6 cut(s)	324, 386, 411, 566, 609, 783
MboI	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
MboII	GAAGA	6 cut(s)	97, 107, 539, 656, 715, 776
MfeI	CAATTG	1 cut(s)	618
MflI	RGATCY	3 cut(s)	322, 409, 564
MhlI	GDGCHC	2 cut(s)	21, 659
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	2 cut(s)	432, 618
MluNI	TGGCCA	1 cut(s)	201
MnlI	CCTC	6 cut(s)	17, 337, 508, 688, 804, 900
Mox20I	TGGCCA	1 cut(s)	201
MroXI	GAANNNNTTC	1 cut(s)	884
MscI	TGGCCA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	21
MunI	CAATTG	1 cut(s)	618
MwoI	GCNNNNNNNGC	3 cut(s)	207, 301, 749
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
NlaIII	CATG	3 cut(s)	175, 495, 719
NlaIV	GGNNCC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	884
PfeI	GAWTC	3 cut(s)	34, 283, 544
PkrI	GCNGC	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	739
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	763
PsuI	RGATCY	3 cut(s)	322, 409, 564
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	2 cut(s)	455, 579
RsaNI	GTAC	2 cut(s)	454, 578
RseI	CAYNNNNRTG	1 cut(s)	534
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	6 cut(s)	322, 384, 409, 564, 607, 781
Sau96I	GGNCC	1 cut(s)	763
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	2 cut(s)	21, 659
SfaNI	GCATC	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	2 cut(s)	432, 618
SsiI	CCGC	2 cut(s)	439, 800
SspMI	CTAG	1 cut(s)	855
StyD4I	CCNGG	1 cut(s)	19
StyI	CCWWGG	2 cut(s)	225, 278
TaaI	ACNGT	1 cut(s)	45
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	3 cut(s)	135, 165, 780
TasI	AATT	2 cut(s)	432, 618
TatI	WGTACW	2 cut(s)	453, 577
TfiI	GAWTC	3 cut(s)	34, 283, 544
TscAI	CASTG	1 cut(s)	870
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	114
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	870
XceI	RCATGY	1 cut(s)	495
XmnI	GAANNNNTTC	1 cut(s)	884
XspI	CTAG	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.