Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Forward (+)

47762058 .. 47766099

Gene Structure 4042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1362500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGGATCTCAAGTCAAAGTTTCTGAAGGTGTACTCCGTTCTGAAATCGGAGCTGTTGGAAGACCCTGCTTTCGACTTCACCAATGACTCTCGCCAATGGGTTGAGCGGCTTAATCGGGGATTGTCTGTTATCGACAGCTATCAGTTGTTGCAACAAGGAAGGGAATTAACTGAAGATGAAATCTTCCTGGCCAGCGCTCTCGGTTGGTGCATCGAATGGCTTCAAGCATTCTTTCTGGTTCATGATGACCTCATGGACGGCTCTCACACACGGCGTGGTCAACCTTGTTGGTTTAGATTGCCCAAGGTTGGTATGATTGCAGTAAACGATGGTGTTGTGCTTCGAAACCATATCCCAAGGATTCTCAGAAAGCATTTCAGAGAAAAGCCATATTATGTGGATCTTCTTGATTTGTTCAACGAGGTGGAATTTCAAACTGCCTCAGGTCAGATGATAGATTTGATCACTACTATCGAAGGAGAAAAAGACCTATCCAAATATTCATTGTCAATTCACCGGCGTATTGTTCAGTACAAGACTGCCTATTACTCATTTTACCTTTCAGTTGCATGTGCATTGCTTATGTCAGGTGAGGAACTGGAAAAACATATTGACGTAAAAAACATTCTAGTTGAGATGGGGATTTACTTTCAAGTACAGGATGATTATTTGGATTGCTTTGGTGATCCGGAAACGATTGGTAAGATAGGAACAGATATTGAAGATTTCAAGTGCTCTTGGCTGGTGGTGAAAGCTTTGGAACTCTGCAACGAGGAACAAAAGAAAGTACTACATGAGAATTATGGGAAACCAGACCCAGAAAATGTGGCAAAAGTAAAGGCCCTCTACAAAGAACTCGATATTGAGGGTGTATTTGCGGATTATGAGAGCAAAAGCCACAAGAAACTGACGAGTTGGATTGAAGGGCACCCAAGCAAAGCGGTGCAAGCAGTGTTGAAGTCCTTCTTGGGCAAGATTTACAAGAGGCAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

333

Amino Acids

38.48

Weight (kDa)

5.68

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	38 - 287	3.7e-75	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	930
AccBSI	CCGCTC	1 cut(s)	109
AccIII	TCCGGA	1 cut(s)	691
AciI	CCGC	4 cut(s)	5, 109, 881, 944
AclWI	GGATC	3 cut(s)	15, 411, 683
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	2 cut(s)	47, 195
AdeI	CACNNNGTG	1 cut(s)	278
AfaI	GTAC	4 cut(s)	35, 536, 660, 792
AfeI	AGCGCT	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	8 cut(s)	227, 421, 437, 656, 725, 733, 926, 961
AjnI	CCWGG	1 cut(s)	189
AjuI	GAANNNNNNNTTGG	2 cut(s)	953, 985
AluBI	AGCT	3 cut(s)	55, 141, 758
AluI	AGCT	3 cut(s)	55, 141, 758
Alw21I	GWGCWC	1 cut(s)	740
AlwI	GGATC	3 cut(s)	15, 411, 683
Aor13HI	TCCGGA	1 cut(s)	691
Aor51HI	AGCGCT	1 cut(s)	199
AoxI	GGCC	2 cut(s)	192, 843
ApoI	RAATTY	1 cut(s)	431
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
Asp700I	GAANNNNTTC	2 cut(s)	222, 965
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	844
AsuHPI	GGTGA	5 cut(s)	73, 509, 605, 698, 763
AsuII	TTCGAA	1 cut(s)	346
AxyI	CCTNAGG	1 cut(s)	445
BaeGI	GKGCMC	1 cut(s)	933
BalI	TGGCCA	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	930
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	740
BccI	CCATC	2 cut(s)	326, 634
BceAI	ACGGC	2 cut(s)	277, 290
BciT130I	CCWGG	1 cut(s)	191
BclI	TGATCA	1 cut(s)	465
BfaI	CTAG	1 cut(s)	632
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
BmcAI	AGTACT	1 cut(s)	792
Bme1390I	CCNGG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	844
BmiI	GGNNCC	1 cut(s)	932
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	306, 359
BsaWI	WCCGGW	1 cut(s)	691
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse118I	RCCGGY	1 cut(s)	519
Bse1I	ACTGG	1 cut(s)	606
Bse21I	CCTNAGG	1 cut(s)	445
Bse3DI	GCAATG	1 cut(s)	578
BseAI	TCCGGA	1 cut(s)	691
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	306, 359
BseGI	GGATG	1 cut(s)	670
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	578
BseMII	CTCAG	2 cut(s)	382, 459
BseNI	ACTGG	1 cut(s)	606
BseSI	GKGCMC	1 cut(s)	933
BshFI	GGCC	2 cut(s)	194, 845
BshNI	GGYRCC	1 cut(s)	930
BsiHKAI	GWGCWC	1 cut(s)	740
BsiSI	CCGG	2 cut(s)	520, 692
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	194, 845
Bsp119I	TTCGAA	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	740, 933
Bsp13I	TCCGGA	1 cut(s)	691
Bsp143I	GATC	4 cut(s)	7, 403, 465, 688
BspACI	CCGC	4 cut(s)	5, 109, 881, 944
BspANI	GGCC	2 cut(s)	194, 845
BspCNI	CTCAG	2 cut(s)	381, 458
BspEI	TCCGGA	1 cut(s)	691
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	932
BspPI	GGATC	3 cut(s)	15, 411, 683
BspT104I	TTCGAA	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	930
BsrBI	CCGCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	578
BsrFI	RCCGGY	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	606
BssAI	RCCGGY	1 cut(s)	519
BssECI	CCNNGG	2 cut(s)	306, 359
BssMI	GATC	4 cut(s)	7, 403, 465, 688
BssT1I	CCWWGG	2 cut(s)	306, 359
Bst2UI	CCWGG	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	196, 951
BstDEI	CTNAG	2 cut(s)	368, 445
BstF5I	GGATG	1 cut(s)	670
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	4 cut(s)	10, 406, 468, 691
BstMBI	GATC	4 cut(s)	7, 403, 465, 688
BstMWI	GCNNNNNNNGC	1 cut(s)	950
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	933
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	2 cut(s)	7, 403
BstYI	RGATCY	2 cut(s)	7, 403
Bsu36I	CCTNAGG	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	194, 845
BtsCI	GGATG	1 cut(s)	670
BtsI	GCAGTG	1 cut(s)	960
BtsIMutI	CAGTG	1 cut(s)	960
Cac8I	GCNNGC	2 cut(s)	196, 951
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	844
Csp6I	GTAC	4 cut(s)	34, 535, 659, 791
CviAII	CATG	4 cut(s)	245, 256, 573, 797
CviQI	GTAC	4 cut(s)	34, 535, 659, 791
DdeI	CTNAG	2 cut(s)	368, 445
DpnI	GATC	4 cut(s)	9, 405, 467, 690
DpnII	GATC	4 cut(s)	7, 403, 465, 688
DraIII	CACNNNGTG	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	192
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	306, 359
Eco47III	AGCGCT	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	47, 195
Eco81I	CCTNAGG	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	844
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	2 cut(s)	306, 359
ErhI	CCWWGG	2 cut(s)	306, 359
FaeI	CATG	4 cut(s)	248, 259, 576, 800
FalI	AAGNNNNNCTT	2 cut(s)	953, 985
FatI	CATG	4 cut(s)	244, 255, 572, 796
FbaI	TGATCA	1 cut(s)	465
Fnu4HI	GCNGC	1 cut(s)	110
FokI	GGATG	1 cut(s)	677
Fsp4HI	GCNGC	1 cut(s)	110
FspBI	CTAG	1 cut(s)	632
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	194, 845
HapII	CCGG	2 cut(s)	520, 692
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	4 cut(s)	248, 259, 576, 800
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	284
HindII	GTYRAC	1 cut(s)	284
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	2 cut(s)	89, 364
HpaII	CCGG	2 cut(s)	520, 692
HphI	GGTGA	5 cut(s)	73, 509, 605, 698, 763
Hpy166II	GTNNAC	3 cut(s)	34, 284, 328
Hpy188I	TCNGA	6 cut(s)	27, 45, 52, 371, 383, 453
Hpy188III	TCNNGA	3 cut(s)	245, 410, 692
Hpy8I	GTNNAC	3 cut(s)	34, 284, 328
HpyAV	CCTTC	5 cut(s)	22, 156, 473, 920, 976
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	7 cut(s)	154, 213, 323, 572, 578, 771, 949
HpyF10VI	GCNNNNNNNGC	1 cut(s)	950
HpyF3I	CTNAG	2 cut(s)	368, 445
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	4 cut(s)	248, 259, 576, 800
HspAI	GCGC	1 cut(s)	198
Kpn2I	TCCGGA	1 cut(s)	691
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	4 cut(s)	7, 403, 465, 688
LmnI	GCTCC	1 cut(s)	52
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	1 cut(s)	618
MalI	GATC	4 cut(s)	9, 405, 467, 690
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	4 cut(s)	7, 403, 465, 688
MboII	GAAGA	5 cut(s)	74, 178, 188, 398, 737
MflI	RGATCY	2 cut(s)	7, 403
MhlI	GDGCHC	2 cut(s)	740, 933
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	4 cut(s)	167, 431, 513, 802
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	39, 899
MnlI	CCTC	8 cut(s)	263, 418, 454, 589, 769, 857, 862, 981
Mox20I	TGGCCA	1 cut(s)	194
MroI	TCCGGA	1 cut(s)	691
MroXI	GAANNNNTTC	2 cut(s)	222, 965
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	2 cut(s)	114, 170
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	2 cut(s)	520, 692
MspR9I	CCNGG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	950
NdeII	GATC	4 cut(s)	7, 403, 465, 688
NlaIII	CATG	4 cut(s)	248, 259, 576, 800
NlaIV	GGNNCC	1 cut(s)	932
NspI	RCATGY	1 cut(s)	576
NspV	TTCGAA	1 cut(s)	346
PagI	TCATGA	1 cut(s)	244
PctI	GAATGC	1 cut(s)	230
PdmI	GAANNNNTTC	2 cut(s)	222, 965
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	111
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	932
PspPI	GGNCC	1 cut(s)	844
PsuI	RGATCY	2 cut(s)	7, 403
RsaI	GTAC	4 cut(s)	35, 536, 660, 792
RsaNI	GTAC	4 cut(s)	34, 535, 659, 791
SaqAI	TTAA	2 cut(s)	114, 170
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	4 cut(s)	7, 403, 465, 688
Sau96I	GGNCC	1 cut(s)	844
ScaI	AGTACT	1 cut(s)	792
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	740, 933
SfaNI	GCATC	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	346
SgrAI	CRCCGGYG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	4 cut(s)	167, 431, 513, 802
SsiI	CCGC	4 cut(s)	5, 109, 881, 944
SspI	AATATT	1 cut(s)	503
SspMI	CTAG	1 cut(s)	632
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	2 cut(s)	306, 359
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	6 cut(s)	75, 135, 216, 346, 477, 861
TasI	AATT	4 cut(s)	167, 431, 513, 802
TatI	WGTACW	4 cut(s)	33, 534, 658, 790
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	2 cut(s)	114, 170
Tru9I	TTAA	2 cut(s)	114, 170
TscAI	CASTG	1 cut(s)	960
TspDTI	ATGAA	3 cut(s)	195, 233, 495
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	960
XapI	RAATTY	1 cut(s)	431
XceI	RCATGY	1 cut(s)	576
XmnI	GAANNNNTTC	2 cut(s)	222, 965
XspI	CTAG	1 cut(s)	632
ZrmI	AGTACT	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.