Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Forward (+)

2200268 .. 2204877

Gene Structure 4610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G028100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAGTGATTTAAGGTCTAAATTCTTGGAGGTCTACTCTGTTTTGAAATCTGAACTTCTCAATGACCCTGCTTTCGAATTCACGGACGTTTCTCGTCAATGGGTTGATCGGATGCTGGACTACAATGTGCCAGGAGGAAAGCTGAATCGAGGTTTATCCGTAATTGACAGCCTAAAGTTACTTAAGGATGGAAGGGAGCTAATGGATGATGAAATTTTTCTGTCATCAGCACTTGGTTGGTGTATTGAATGGCTTCAAGCATATTTTCTCGTTCTTGATGATATCATGGATAGCTCTCATACACGTAGGGGTCAGCCCTGCTGGTTCAGACTATCAAAGATTGGAATGATTGCTGTGAATGATGGCATACTACTGCGCAACCATATCCCGAGAGTTCTCAAAAATCACTTTAAGGGAAAGCCCTACTATGTGGATCTGCTAGATTTATTTAATGAGGTGGAATTTCAAACAGCCCATGGACAATTGATAGACTTAATTACCACTCATGAAGGAGAGAAAGATCTGTCTAAGTACTCATTGGCACTTCACCGCCGCATCGTTCAGTACAAAACTGCTTATTACTCATTTTACCTTCCAGTAGCATGCGCGTTGCTAATGGCAGGCGAAGATCTTGAAAGCCATGTTGATGTGAAGAATATTCTTATTGAAATGGGAACCTATTTTCAAGTACAGGATGATTATTTGGACTGCTTTGGTGATCCCGAAGTGATTGGCAAGGTTGGGACAGATATTCAAGACTTCAAGTGCTCTTGGTTGGTTGTGAAAGCTTTAGAACTTTCCAACGAGGGACAAAAGAAACTATTACATGAGAACTACGGGAAAGATGATCAAACATGTATTGAAAAAGTAAAAGAGCTATATAAAGTCCTTGATATTCAGGGTGTATTTTTGGAGTATGAGAGCAGCAGTTATCAGAAACTTACAAAATCCATTGAATCTCATTCAAGTAAAGCGGTACAGGCAGTGTTGAAATCATTCCTGGCAAAGATATACAAGAGGCAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

343

Amino Acids

39.44

Weight (kDa)

5.66

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	608
AciI	CCGC	3 cut(s)	550, 553, 974
AclWI	GGATC	2 cut(s)	441, 713
AcsI	RAATTY	4 cut(s)	20, 77, 213, 461
AfaI	GTAC	4 cut(s)	533, 566, 690, 978
AflII	CTTAAG	1 cut(s)	182
AflIII	ACRYGT	2 cut(s)	302, 854
AjnI	CCWGG	2 cut(s)	130, 999
AluBI	AGCT	5 cut(s)	142, 199, 294, 788, 877
AluI	AGCT	5 cut(s)	142, 199, 294, 788, 877
Alw21I	GWGCWC	1 cut(s)	770
AlwI	GGATC	2 cut(s)	441, 713
Ama87I	CYCGRG	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	924
ApoI	RAATTY	4 cut(s)	20, 77, 213, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
Asp700I	GAANNNNTTC	3 cut(s)	216, 252, 995
AspLEI	GCGC	2 cut(s)	378, 608
AsuHPI	GGTGA	2 cut(s)	539, 728
AsuII	TTCGAA	1 cut(s)	75
AvaI	CYCGRG	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	770
BbvI	GCAGC	1 cut(s)	936
BccI	CCATC	2 cut(s)	182, 356
BciT130I	CCWGG	2 cut(s)	132, 1001
BclI	TGATCA	1 cut(s)	847
BfaI	CTAG	1 cut(s)	440
BfrI	CTTAAG	1 cut(s)	182
BglII	AGATCT	2 cut(s)	520, 628
BisI	GCNGC	2 cut(s)	553, 925
BlsI	GCNGC	2 cut(s)	554, 926
BmcAI	AGTACT	1 cut(s)	533
Bme1390I	CCNGG	2 cut(s)	132, 1001
BmeT110I	CYCGRG	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	676
BmrFI	CCNGG	2 cut(s)	132, 1001
BmsI	GCATC	2 cut(s)	102, 564
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
Bpu14I	TTCGAA	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	475
Bse1I	ACTGG	1 cut(s)	596
BseBI	CCWGG	2 cut(s)	132, 1001
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	4 cut(s)	117, 193, 211, 700
BseNI	ACTGG	1 cut(s)	596
BseXI	GCAGC	1 cut(s)	936
Bsh1236I	CGCG	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	770
BsiHKCI	CYCGRG	1 cut(s)	388
BslFI	GGGAC	2 cut(s)	757, 822
BsmFI	GGGAC	2 cut(s)	757, 822
BsoBI	CYCGRG	1 cut(s)	388
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	770
Bsp143I	GATC	6 cut(s)	106, 433, 520, 628, 718, 847
Bsp19I	CCATGG	1 cut(s)	475
BspACI	CCGC	3 cut(s)	550, 553, 974
BspFNI	CGCG	1 cut(s)	608
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	676
BspPI	GGATC	2 cut(s)	441, 713
BspT104I	TTCGAA	1 cut(s)	75
BspTI	CTTAAG	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	596
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	6 cut(s)	106, 433, 520, 628, 718, 847
BssT1I	CCWWGG	1 cut(s)	475
Bst2UI	CCWGG	2 cut(s)	132, 1001
BstAFI	CTTAAG	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	305
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	2 cut(s)	604, 622
BstDEI	CTNAG	1 cut(s)	528
BstDSI	CCRYGG	1 cut(s)	475
BstF5I	GGATG	4 cut(s)	117, 193, 211, 700
BstFNI	CGCG	1 cut(s)	608
BstHHI	GCGC	2 cut(s)	378, 608
BstKTI	GATC	6 cut(s)	109, 436, 523, 631, 721, 850
BstMBI	GATC	6 cut(s)	106, 433, 520, 628, 718, 847
BstMWI	GCNNNNNNNGC	1 cut(s)	980
BstNI	CCWGG	2 cut(s)	132, 1001
BstNSI	RCATGY	2 cut(s)	606, 858
BstSCI	CCNGG	2 cut(s)	130, 999
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	1 cut(s)	936
BstX2I	RGATCY	3 cut(s)	433, 520, 628
BstYI	RGATCY	3 cut(s)	433, 520, 628
BtgI	CCRYGG	1 cut(s)	475
BtsCI	GGATG	4 cut(s)	117, 193, 211, 700
BtsI	GCAGTG	1 cut(s)	990
BtsIMutI	CAGTG	1 cut(s)	990
Cac8I	GCNNGC	2 cut(s)	604, 622
CciI	TCATGA	1 cut(s)	505
CfoI	GCGC	2 cut(s)	378, 608
Csp6I	GTAC	4 cut(s)	532, 565, 689, 977
CviAII	CATG	7 cut(s)	286, 476, 506, 603, 641, 827, 855
CviQI	GTAC	4 cut(s)	532, 565, 689, 977
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	6 cut(s)	108, 435, 522, 630, 720, 849
DpnII	GATC	6 cut(s)	106, 433, 520, 628, 718, 847
Eco130I	CCWWGG	1 cut(s)	475
Eco32I	GATATC	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	130, 999
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	475
FaeI	CATG	7 cut(s)	289, 479, 509, 606, 644, 830, 858
FaqI	GGGAC	2 cut(s)	757, 822
FatI	CATG	7 cut(s)	285, 475, 505, 602, 640, 826, 854
FbaI	TGATCA	1 cut(s)	847
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	553, 925
FokI	GGATG	4 cut(s)	124, 200, 218, 707
Fsp4HI	GCNGC	2 cut(s)	553, 925
FspBI	CTAG	1 cut(s)	440
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	2 cut(s)	377, 607
GluI	GCNGC	2 cut(s)	553, 925
HhaI	GCGC	2 cut(s)	378, 608
Hin1II	CATG	7 cut(s)	289, 479, 509, 606, 644, 830, 858
Hin6I	GCGC	2 cut(s)	376, 606
HinP1I	GCGC	2 cut(s)	376, 606
HindIII	AAGCTT	1 cut(s)	786
HinfI	GANTC	2 cut(s)	145, 956
HphI	GGTGA	2 cut(s)	539, 728
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	4 cut(s)	52, 111, 329, 936
Hpy188III	TCNNGA	6 cut(s)	275, 388, 506, 632, 722, 755
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	3 cut(s)	186, 503, 602
HpyCH4IV	ACGT	2 cut(s)	87, 304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	980
HpyF3I	CTNAG	1 cut(s)	528
HpySE526I	ACGT	2 cut(s)	87, 304
Hsp92II	CATG	7 cut(s)	289, 479, 509, 606, 644, 830, 858
HspAI	GCGC	2 cut(s)	376, 606
Ksp22I	TGATCA	1 cut(s)	847
Kzo9I	GATC	6 cut(s)	106, 433, 520, 628, 718, 847
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	1 cut(s)	936
LweI	GCATC	2 cut(s)	102, 564
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	2 cut(s)	87, 304
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	6 cut(s)	108, 435, 522, 630, 720, 849
MboI	GATC	6 cut(s)	106, 433, 520, 628, 718, 847
MboII	GAAGA	2 cut(s)	638, 664
MfeI	CAATTG	1 cut(s)	482
MflI	RGATCY	3 cut(s)	433, 520, 628
MhlI	GDGCHC	1 cut(s)	770
MluCI	AATT	7 cut(s)	20, 77, 162, 213, 461, 482, 495
MmeI	TCCRAC	1 cut(s)	825
MnlI	CCTC	6 cut(s)	22, 128, 143, 448, 799, 1011
MroXI	GAANNNNTTC	3 cut(s)	216, 252, 995
MseI	TTAA	5 cut(s)	11, 183, 411, 450, 494
MslI	CAYNNNNRTG	1 cut(s)	645
MspCI	CTTAAG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	132, 1001
MunI	CAATTG	1 cut(s)	482
MvaI	CCWGG	2 cut(s)	132, 1001
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	1 cut(s)	980
NcoI	CCATGG	1 cut(s)	475
NdeII	GATC	6 cut(s)	106, 433, 520, 628, 718, 847
NlaIII	CATG	7 cut(s)	289, 479, 509, 606, 644, 830, 858
NlaIV	GGNNCC	1 cut(s)	676
NsbI	TGCGCA	1 cut(s)	377
NspI	RCATGY	2 cut(s)	606, 858
NspV	TTCGAA	1 cut(s)	75
PaeI	GCATGC	1 cut(s)	606
PagI	TCATGA	1 cut(s)	505
PciI	ACATGT	1 cut(s)	854
PdmI	GAANNNNTTC	3 cut(s)	216, 252, 995
PfeI	GAWTC	2 cut(s)	145, 956
PkrI	GCNGC	2 cut(s)	554, 926
Ppu21I	YACGTR	1 cut(s)	305
PscI	ACATGT	1 cut(s)	854
Psp6I	CCWGG	2 cut(s)	130, 999
PspGI	CCWGG	2 cut(s)	130, 999
PspN4I	GGNNCC	1 cut(s)	676
PsuI	RGATCY	3 cut(s)	433, 520, 628
RsaI	GTAC	4 cut(s)	533, 566, 690, 978
RsaNI	GTAC	4 cut(s)	532, 565, 689, 977
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	5 cut(s)	11, 183, 411, 450, 494
SatI	GCNGC	2 cut(s)	553, 925
Sau3AI	GATC	6 cut(s)	106, 433, 520, 628, 718, 847
ScaI	AGTACT	1 cut(s)	533
ScrFI	CCNGG	2 cut(s)	132, 1001
SduI	GDGCHC	1 cut(s)	770
SfaNI	GCATC	2 cut(s)	102, 564
SfuI	TTCGAA	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SphI	GCATGC	1 cut(s)	606
Sse9I	AATT	7 cut(s)	20, 77, 162, 213, 461, 482, 495
SsiI	CCGC	3 cut(s)	550, 553, 974
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	2 cut(s)	130, 999
StyI	CCWWGG	1 cut(s)	475
TaiI	ACGT	2 cut(s)	90, 307
TaqI	TCGA	2 cut(s)	75, 148
TasI	AATT	7 cut(s)	20, 77, 162, 213, 461, 482, 495
TatI	WGTACW	3 cut(s)	531, 564, 688
TauI	GCSGC	1 cut(s)	555
TfiI	GAWTC	2 cut(s)	145, 956
Tru1I	TTAA	5 cut(s)	11, 183, 411, 450, 494
Tru9I	TTAA	5 cut(s)	11, 183, 411, 450, 494
TscAI	CASTG	1 cut(s)	990
TseI	GCWGC	1 cut(s)	924
TspDTI	ATGAA	2 cut(s)	225, 522
TspGWI	ACGGA	2 cut(s)	98, 148
TspRI	CASTG	1 cut(s)	990
Vha464I	CTTAAG	1 cut(s)	182
XapI	RAATTY	4 cut(s)	20, 77, 213, 461
XceI	RCATGY	2 cut(s)	606, 858
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	3 cut(s)	216, 252, 995
XspI	CTAG	1 cut(s)	440
ZrmI	AGTACT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.