Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Forward (+)

3675853 .. 3679813

Gene Structure 3961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCGGATCTCAGGTCAAAGTTCATGAACGTCTACTCTGTTCTGAAATATGAGCTCTTGGAAGACCCTGCCTTCGAATTCACTGATACCTCTCGTCAATGGGTCGAGCAGATGCTGGACTACAATGTGCCTGGAGGAAAGCTGAATCGGGGATTGTCTGTTATCGACAGCTACCAGTTGTTGCAACATGGAAGGGAATTGACTGAAGATGAAATCTTCTTGGCCAGCGCTCTTGGTTGGTGCATCGAATGGCTCCAAGCATTTTTTCTGGTTCACGATGACATGATGGATGGTTCTCACACACGACGTGGCCAACCTTGCTGGTTTAGATTGCCCAAGGTTGGTCTGATTGCAGCGAACGATGGAGTTCTACTTAGAAACCATATTCCTAGGATTCTCAAGAAGCACTTCAGGCAAAAGCAATATTATGTGGATCTTCTTGATTTGTTCAATGAGGTGGAGTTTCAAACAGCGTCAAGTCAGATGATAGATTTGATCACTACCATTGAAGGAGAAAAAGATCTATCCAAATACTCATTGGCAATTCATCGCCGTATTGTTCAGTACAAGACTGCCTATTACTCTTTTTATCTTTCGGTTGCATGTGCATTGCTTATGTCAGGTGAGGAACTGGACATGCATATTGATGTAAAGAACCTCCTTATTGATATGGGGATCTACTTTCAAGTACAGGATGATTATTTGGATTGTTTTGGTGATCCGGAAACAATTGGAAAGATAGGAACAGATATTGAAGATTTCAAGTGCTCTTGGTTGGTTGTGAAAGCTCTGGAACTTAGCAATGAGGAACAAAAGAAAACACTATATGAGAACTATGGAAACCCTGACCCAGCAAAGGTCGCCAAAGTAAAGGCCCTTTATAAAGAACTCGATCTTCAGGGTGTGTTTGCGGAGTATGAGAGGCAAAGCTACGAGAAGCTGACGAGTTCTATTGAAGCTCATCCAAGCAAGGCAGTGCAAGAAGTGTTGAAGTCCTTCTTGGGTAAGATCTACAAGAGGCAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

343

Amino Acids

39.68

Weight (kDa)

5.31

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	33 - 297	2.4e-78	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	882
AccI	GTMKAC	1 cut(s)	33
AccIII	TCCGGA	1 cut(s)	721
AciI	CCGC	2 cut(s)	5, 911
AclWI	GGATC	4 cut(s)	15, 441, 683, 713
AcoI	YGGCCR	2 cut(s)	222, 310
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	3 cut(s)	225, 394, 881
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	2 cut(s)	566, 690
AfeI	AGCGCT	1 cut(s)	229
AfiI	CCNNNNNNNGG	2 cut(s)	341, 856
AgsI	TTSAA	8 cut(s)	451, 467, 509, 686, 755, 763, 956, 991
AjiI	CACGTC	1 cut(s)	308
AjnI	CCWGG	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	4 cut(s)	249, 281, 983, 1015
AluBI	AGCT	7 cut(s)	55, 142, 171, 788, 930, 940, 959
AluI	AGCT	7 cut(s)	55, 142, 171, 788, 930, 940, 959
Alw21I	GWGCWC	2 cut(s)	57, 770
AlwI	GGATC	4 cut(s)	15, 441, 683, 713
AlwNI	CAGNNNCTG	1 cut(s)	115
Aor13HI	TCCGGA	1 cut(s)	721
Aor51HI	AGCGCT	1 cut(s)	229
AoxI	GGCC	3 cut(s)	222, 310, 873
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	77
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
Asp700I	GAANNNNTTC	2 cut(s)	407, 995
AspA2I	CCTAGG	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	874
AsuHPI	GGTGA	2 cut(s)	635, 728
AsuII	TTCGAA	1 cut(s)	75
AvrII	CCTAGG	1 cut(s)	389
BalI	TGGCCA	2 cut(s)	224, 312
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	57, 770
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	3 cut(s)	280, 284, 356
BceAI	ACGGC	1 cut(s)	537
BciT130I	CCWGG	1 cut(s)	132
BclI	TGATCA	1 cut(s)	495
BfaI	CTAG	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	231
BglII	AGATCT	2 cut(s)	520, 1008
BisI	GCNGC	1 cut(s)	354
BlnI	CCTAGG	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	132
BmgBI	CACGTC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	874
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	2 cut(s)	102, 252
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	383
BsaJI	CCNNGG	2 cut(s)	336, 389
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 856
Bse1I	ACTGG	2 cut(s)	175, 636
Bse3DI	GCAATG	2 cut(s)	608, 808
BseAI	TCCGGA	1 cut(s)	721
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	336, 389
BseGI	GGATG	3 cut(s)	295, 700, 961
BseLI	CCNNNNNNNGG	2 cut(s)	341, 856
BseMI	GCAATG	2 cut(s)	608, 808
BseMII	CTCAG	1 cut(s)	25
BseNI	ACTGG	2 cut(s)	175, 636
BseXI	GCAGC	1 cut(s)	365
BseYI	CCCAGC	1 cut(s)	850
BshFI	GGCC	3 cut(s)	224, 312, 875
BsiHKAI	GWGCWC	2 cut(s)	57, 770
BsiSI	CCGG	1 cut(s)	722
BslI	CCNNNNNNNGG	2 cut(s)	341, 856
BsnI	GGCC	3 cut(s)	224, 312, 875
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	57, 770
Bsp13I	TCCGGA	1 cut(s)	721
Bsp143I	GATC	8 cut(s)	7, 433, 495, 520, 675, 718, 892, 1008
BspACI	CCGC	2 cut(s)	5, 911
BspANI	GGCC	3 cut(s)	224, 312, 875
BspCNI	CTCAG	1 cut(s)	24
BspEI	TCCGGA	1 cut(s)	721
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	254
BspPI	GGATC	4 cut(s)	15, 441, 683, 713
BspT104I	TTCGAA	1 cut(s)	75
BsrDI	GCAATG	2 cut(s)	608, 808
BsrI	ACTGG	2 cut(s)	175, 636
BssECI	CCNNGG	2 cut(s)	336, 389
BssMI	GATC	8 cut(s)	7, 433, 495, 520, 675, 718, 892, 1008
BssT1I	CCWWGG	2 cut(s)	336, 389
Bst2UI	CCWGG	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	3 cut(s)	11, 374, 797
BstF5I	GGATG	3 cut(s)	295, 700, 961
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	8 cut(s)	10, 436, 498, 523, 678, 721, 895, 1011
BstMBI	GATC	8 cut(s)	7, 433, 495, 520, 675, 718, 892, 1008
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 412, 860
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	2 cut(s)	606, 640
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	5 cut(s)	7, 433, 520, 675, 1008
BstYI	RGATCY	5 cut(s)	7, 433, 520, 675, 1008
BsuRI	GGCC	3 cut(s)	224, 312, 875
BtgZI	GCGATG	1 cut(s)	533
BtrI	CACGTC	1 cut(s)	308
BtsCI	GGATG	3 cut(s)	295, 700, 961
BtsI	GCAGTG	1 cut(s)	981
BtsIMutI	CAGTG	2 cut(s)	81, 981
Cac8I	GCNNGC	1 cut(s)	226
CaiI	CAGNNNCTG	1 cut(s)	115
CciI	TCATGA	1 cut(s)	24
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	874
CseI	GACGC	1 cut(s)	462
Csp6I	GTAC	2 cut(s)	565, 689
CviAII	CATG	5 cut(s)	25, 188, 283, 603, 637
CviQI	GTAC	2 cut(s)	565, 689
DdeI	CTNAG	3 cut(s)	11, 374, 797
DpnI	GATC	8 cut(s)	9, 435, 497, 522, 677, 720, 894, 1010
DpnII	GATC	8 cut(s)	7, 433, 495, 520, 675, 718, 892, 1008
DraIII	CACNNNGTG	1 cut(s)	308
EaeI	YGGCCR	2 cut(s)	222, 310
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	336, 389
Eco24I	GRGCYC	1 cut(s)	57
Eco47III	AGCGCT	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	3 cut(s)	225, 394, 881
EcoICRI	GAGCTC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	874
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	2 cut(s)	336, 389
EcoT22I	ATGCAT	1 cut(s)	642
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	2 cut(s)	336, 389
FaeI	CATG	5 cut(s)	28, 191, 286, 606, 640
FalI	AAGNNNNNCTT	4 cut(s)	392, 424, 983, 1015
FatI	CATG	5 cut(s)	24, 187, 282, 602, 636
FbaI	TGATCA	1 cut(s)	495
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	3 cut(s)	302, 707, 948
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	354
GsaI	CCCAGC	1 cut(s)	854
GsuI	CTGGAG	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	3 cut(s)	224, 312, 875
HapII	CCGG	1 cut(s)	722
HgaI	GACGC	1 cut(s)	462
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	5 cut(s)	28, 191, 286, 606, 640
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HinfI	GANTC	2 cut(s)	145, 394
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	2 cut(s)	635, 728
Hpy166II	GTNNAC	2 cut(s)	34, 274
Hpy188I	TCNGA	3 cut(s)	45, 348, 483
Hpy188III	TCNNGA	6 cut(s)	25, 275, 400, 440, 722, 791
Hpy8I	GTNNAC	2 cut(s)	34, 274
Hpy99I	CGWCG	1 cut(s)	309
HpyAV	CCTTC	4 cut(s)	82, 186, 503, 1006
HpyCH4IV	ACGT	2 cut(s)	30, 307
HpyCH4V	TGCA	7 cut(s)	184, 243, 353, 602, 608, 640, 979
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 412, 860
HpyF3I	CTNAG	3 cut(s)	11, 374, 797
HpySE526I	ACGT	2 cut(s)	30, 307
Hsp92II	CATG	5 cut(s)	28, 191, 286, 606, 640
HspAI	GCGC	1 cut(s)	228
Kpn2I	TCCGGA	1 cut(s)	721
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	8 cut(s)	7, 433, 495, 520, 675, 718, 892, 1008
LmnI	GCTCC	1 cut(s)	258
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	2 cut(s)	102, 252
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	2 cut(s)	30, 307
MalI	GATC	8 cut(s)	9, 435, 497, 522, 677, 720, 894, 1010
MboI	GATC	8 cut(s)	7, 433, 495, 520, 675, 718, 892, 1008
MboII	GAAGA	6 cut(s)	74, 208, 218, 428, 767, 887
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	5 cut(s)	7, 433, 520, 675, 1008
MhlI	GDGCHC	2 cut(s)	57, 770
MlsI	TGGCCA	2 cut(s)	224, 312
MluCI	AATT	4 cut(s)	77, 197, 543, 729
MluNI	TGGCCA	2 cut(s)	224, 312
MnlI	CCTC	8 cut(s)	100, 128, 448, 619, 668, 799, 915, 1011
Mox20I	TGGCCA	2 cut(s)	224, 312
Mph1103I	ATGCAT	1 cut(s)	642
MroI	TCCGGA	1 cut(s)	721
MroXI	GAANNNNTTC	2 cut(s)	407, 995
MscI	TGGCCA	2 cut(s)	224, 312
MslI	CAYNNNNRTG	1 cut(s)	645
Msp20I	TGGCCA	2 cut(s)	224, 312
MspI	CCGG	1 cut(s)	722
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	729
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	318, 412, 860
NdeII	GATC	8 cut(s)	7, 433, 495, 520, 675, 718, 892, 1008
NlaIII	CATG	5 cut(s)	28, 191, 286, 606, 640
NlaIV	GGNNCC	1 cut(s)	254
NsiI	ATGCAT	1 cut(s)	642
NspI	RCATGY	2 cut(s)	606, 640
NspV	TTCGAA	1 cut(s)	75
PagI	TCATGA	1 cut(s)	24
PdmI	GAANNNNTTC	2 cut(s)	407, 995
PfeI	GAWTC	2 cut(s)	145, 394
PkrI	GCNGC	1 cut(s)	355
PsiI	TTATAA	1 cut(s)	882
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	850
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	874
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	5 cut(s)	7, 433, 520, 675, 1008
RsaI	GTAC	2 cut(s)	566, 690
RsaNI	GTAC	2 cut(s)	565, 689
RseI	CAYNNNNRTG	1 cut(s)	645
SacI	GAGCTC	1 cut(s)	57
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	8 cut(s)	7, 433, 495, 520, 675, 718, 892, 1008
Sau96I	GGNCC	1 cut(s)	874
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	2 cut(s)	57, 770
SfaNI	GCATC	2 cut(s)	102, 252
SfuI	TTCGAA	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	4 cut(s)	77, 197, 543, 729
SsiI	CCGC	2 cut(s)	5, 911
SspI	AATATT	1 cut(s)	425
SspMI	CTAG	1 cut(s)	390
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	2 cut(s)	336, 389
TaiI	ACGT	2 cut(s)	33, 310
TaqI	TCGA	5 cut(s)	75, 105, 165, 246, 891
TasI	AATT	4 cut(s)	77, 197, 543, 729
TatI	WGTACW	2 cut(s)	564, 688
TfiI	GAWTC	2 cut(s)	145, 394
TscAI	CASTG	2 cut(s)	88, 981
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	4 cut(s)	13, 41, 225, 536
TspRI	CASTG	2 cut(s)	88, 981
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	2 cut(s)	606, 640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmaJI	CCTAGG	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	2 cut(s)	407, 995
XspI	CTAG	1 cut(s)	390
Zsp2I	ATGCAT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.