Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002745

Physical Location & Seq

Genomic Coordinates Forward (+)

19345110 .. 19347677

Gene Structure 2568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAGTGTGAGTTGTTGTTGTAGGAATCTGGGCAAGACAATAAAAAAGGCAATACCTTCACATCATTTGCATCTGAGAAGTCTTGGTGGGAGTCTCTATCGTCGTCGTATCCAAAGCTCTTCAATGGAGACCGATCTCAAGTCAACCTTTCTCAACGTTTATTCTGTTCTCAAGTCTGACCTTCTTCATGACCCTTCCTTCGAATTCACCAATGAATCTCGTCTCTGGGTTGATCGGATGCTGGACTACAATGTACGTGGAGGGAAACTCAATCGGGGTCTCTCTGTTGTTGACAGTTTCAAACTTTTGAAGCAAGGCAATGATTTGACTGAGCAAGAGGTTTTCCTCTCTTGTGCTCTCGGTTGGTGCATTGAATGGCTCCAAGCTTATTTCCTTGTGCTTGATGATATTATGGATAACTCTGTCACTCGCCGTGGTCAACCTTGCTGGTTCAGAGTTCCTCAGGTTGGTATGGTTGCCATCAATGATGGGATTCTACTTCGCAATCACATCCACAGGATTCTCAAAAAGCATTTCCGTGATAAGCCTTACTATGTTGACCTTGTTGATTTGTTTAATGAGGTTGAGTTGCAAACAGCTTGTGGCCAGATGATAGATTTGATCACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAATCCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCTGTTGCTTGTGCGTTGCTTATGGCCGGCGAAAATTTGGAAAACCATATTGATGTGAAGAATGTTCTTGTTGACATGGGAATCTACTTCCAAGTGCAGGATGATTATCTGGATTGTTTTGCTGATCCCGAGACGCTTGGCAAGATAGGAACAGATATAGAAGATTTCAAATGCTCGTGGTTGGTGGTTAAGGCATTAGAGCGCTGCAGCGAAGAACAAACTAAGATATTATATGAGAACTATGGTAAACCCGACCCATCGAACGTTGCTAAAGTGAAGGATCTCTACAAAGAGCTGGATCTTGAGGGAGTTTTCATGGAGTATGAGAGCAAAAGCTACGAGAAGCTGACTGGAGCGATTGAGGGACACCAAAGTAAAGCAATCCAAGCAGTGCTAAAATCCTTCTTGGCTAAGATCTACAAGAGGCAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

384

Amino Acids

44.26

Weight (kDa)

6.57

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	76 - 339	3.1e-79	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17190 AT4G17190 AT4G17190 AT5G47770
fragaria_vesca	FvH4_3g00240 FvH4_3g00240 FvH4_3g42290 FvH4_6g06340
malus_domestica	MD05G1362500.v1.1 MD10G1340100.v1.1 MD11G1036800.v1.1
prunus_persica	Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.4G002700_v2.0.a1 Prupe.6G028100_v2.0.a1 Prupe.6G028100_v2.0.a1
pyrus_communis	pycom03g02710 pycom05g32900 pycom11g03050
rosa_chinensis	RchiOBHm_Chr5g0000321 RchiOBHm_Chr5g0075621
rosa_laevigata	RLG00000030859 RLG00000036584
rosa_multiflora	Rmu_sc0001680.1_g000008 Rmu_sc0001811.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005950 Rroxscaffold_1G00075800
rosa_rugosa	Rorug04G0383100 Rorug04G0383200 Rorug05G0441800
rosa_samantha	Rh5AG002400 Rh5BG003800 Rh5BG519100 Rh5CG002700 Rh5CG542700 Rh5DG002800 Rh5DG530000
rosa_wichuraiana	Rw5G000290 Rw5G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	2 cut(s)	156, 984
AclWI	GGATC	3 cut(s)	839, 1008, 1026
AcoI	YGGCCR	3 cut(s)	604, 651, 744
AcsI	RAATTY	2 cut(s)	203, 754
AfaI	GTAC	3 cut(s)	255, 659, 692
AfeI	AGCGCT	1 cut(s)	923
AfiI	CCNNNNNNNGG	2 cut(s)	467, 817
AgsI	TTSAA	6 cut(s)	123, 301, 310, 374, 635, 889
AluBI	AGCT	6 cut(s)	117, 386, 599, 1015, 1056, 1066
AluI	AGCT	6 cut(s)	117, 386, 599, 1015, 1056, 1066
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	5 cut(s)	98, 122, 227, 284, 845
AlwI	GGATC	3 cut(s)	839, 1008, 1026
Ama87I	CYCGRG	1 cut(s)	848
Aor51HI	AGCGCT	1 cut(s)	923
AoxI	GGCC	3 cut(s)	604, 651, 744
ApeKI	GCWGC	2 cut(s)	924, 927
ApoI	RAATTY	2 cut(s)	203, 754
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspLEI	GCGC	1 cut(s)	924
AsuHPI	GGTGA	2 cut(s)	199, 616
AsuII	TTCGAA	1 cut(s)	201
AvaI	CYCGRG	1 cut(s)	848
AxyI	CCTNAGG	1 cut(s)	462
BalI	TGGCCA	2 cut(s)	606, 653
BarI	GAAGNNNNNNTAC	2 cut(s)	989, 1021
BauI	CACGAG	1 cut(s)	895
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	2 cut(s)	911, 939
BccI	CCATC	3 cut(s)	482, 488, 985
BceAI	ACGGC	2 cut(s)	417, 714
BciVI	GTATCC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	621
BcoDI	GTCTC	5 cut(s)	98, 122, 227, 284, 845
BfmI	CTRYAG	1 cut(s)	925
BfoI	RGCGCY	1 cut(s)	925
BfuI	GTATCC	1 cut(s)	119
BglII	AGATCT	1 cut(s)	1134
BisI	GCNGC	2 cut(s)	925, 928
BlsI	GCNGC	2 cut(s)	926, 929
BmcAI	AGTACT	1 cut(s)	659
BmeT110I	CYCGRG	1 cut(s)	848
BmiI	GGNNCC	1 cut(s)	380
BmsI	GCATC	2 cut(s)	79, 228
BplI	GAGNNNNNCTC	2 cut(s)	252, 284
BpmI	CTGGAG	1 cut(s)	1092
Bpu14I	TTCGAA	1 cut(s)	201
BpuEI	CTTGAG	3 cut(s)	122, 155, 1043
BsaAI	YACGTR	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	825
BsaI	GGTCTC	2 cut(s)	122, 284
BsaJI	CCNNGG	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 817
Bse118I	RCCGGY	1 cut(s)	746
Bse1I	ACTGG	2 cut(s)	688, 1075
Bse21I	CCTNAGG	1 cut(s)	462
Bse3DI	GCAATG	1 cut(s)	325
Bse8I	GATNNNNATC	1 cut(s)	825
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	3 cut(s)	243, 510, 826
BseJI	GATNNNNATC	1 cut(s)	825
BseLI	CCNNNNNNNGG	2 cut(s)	467, 817
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	3 cut(s)	65, 321, 476
BseNI	ACTGG	2 cut(s)	688, 1075
BseXI	GCAGC	2 cut(s)	911, 939
BsgI	GTGCAG	1 cut(s)	836
BshFI	GGCC	3 cut(s)	606, 653, 746
BsiHKAI	GWGCWC	1 cut(s)	358
BsiHKCI	CYCGRG	1 cut(s)	848
BsiSI	CCGG	1 cut(s)	747
BslFI	GGGAC	1 cut(s)	1098
BslI	CCNNNNNNNGG	2 cut(s)	467, 817
BsmAI	GTCTC	5 cut(s)	98, 122, 227, 284, 845
BsmBI	CGTCTC	2 cut(s)	227, 845
BsmFI	GGGAC	1 cut(s)	1098
BsnI	GGCC	3 cut(s)	606, 653, 746
Bso31I	GGTCTC	2 cut(s)	122, 284
BsoBI	CYCGRG	1 cut(s)	848
Bsp119I	TTCGAA	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	7 cut(s)	133, 232, 621, 844, 1000, 1018, 1134
BspANI	GGCC	3 cut(s)	606, 653, 746
BspCNI	CTCAG	3 cut(s)	66, 322, 475
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	380
BspMAI	CTGCAG	1 cut(s)	929
BspPI	GGATC	3 cut(s)	839, 1008, 1026
BspQI	GCTCTTC	1 cut(s)	124
BspT104I	TTCGAA	1 cut(s)	201
BspTNI	GGTCTC	2 cut(s)	122, 284
BsrDI	GCAATG	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	746
BsrI	ACTGG	2 cut(s)	688, 1075
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	1 cut(s)	433
BssMI	GATC	7 cut(s)	133, 232, 621, 844, 1000, 1018, 1134
BssSI	CACGAG	1 cut(s)	895
Bst2BI	CACGAG	1 cut(s)	895
Bst4CI	ACNGT	2 cut(s)	296, 677
Bst6I	CTCTTC	1 cut(s)	124
BstBAI	YACGTR	1 cut(s)	257
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	748
BstDEI	CTNAG	5 cut(s)	74, 330, 462, 942, 1131
BstDSI	CCRYGG	1 cut(s)	433
BstF5I	GGATG	3 cut(s)	243, 510, 826
BstH2I	RGCGCY	1 cut(s)	925
BstHHI	GCGC	1 cut(s)	924
BstKTI	GATC	7 cut(s)	136, 235, 624, 847, 1003, 1021, 1137
BstMAI	GTCTC	5 cut(s)	98, 122, 227, 284, 845
BstMBI	GATC	7 cut(s)	133, 232, 621, 844, 1000, 1018, 1134
BstMWI	GCNNNNNNNGC	1 cut(s)	1106
BstSFI	CTRYAG	1 cut(s)	925
BstV1I	GCAGC	2 cut(s)	911, 939
BstX2I	RGATCY	3 cut(s)	1000, 1018, 1134
BstYI	RGATCY	3 cut(s)	1000, 1018, 1134
Bsu36I	CCTNAGG	1 cut(s)	462
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	606, 653, 746
BtgI	CCRYGG	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	243, 510, 826
BtsI	GCAGTG	1 cut(s)	1116
BtsIMutI	CAGTG	1 cut(s)	1116
Cac8I	GCNNGC	1 cut(s)	748
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	1 cut(s)	924
Cfr10I	RCCGGY	1 cut(s)	746
CseI	GACGC	1 cut(s)	862
Csp6I	GTAC	3 cut(s)	254, 658, 691
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	3 cut(s)	188, 796, 1036
CviQI	GTAC	3 cut(s)	254, 658, 691
DdeI	CTNAG	5 cut(s)	74, 330, 462, 942, 1131
DpnI	GATC	7 cut(s)	135, 234, 623, 846, 1002, 1020, 1136
DpnII	GATC	7 cut(s)	133, 232, 621, 844, 1000, 1018, 1134
EaeI	YGGCCR	3 cut(s)	604, 651, 744
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco31I	GGTCTC	2 cut(s)	122, 284
Eco47III	AGCGCT	1 cut(s)	923
Eco81I	CCTNAGG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	848
EcoRI	GAATTC	1 cut(s)	203
Esp3I	CGTCTC	2 cut(s)	227, 845
FaeI	CATG	3 cut(s)	191, 799, 1039
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	1 cut(s)	1098
FatI	CATG	3 cut(s)	187, 795, 1035
FbaI	TGATCA	1 cut(s)	621
Fnu4HI	GCNGC	2 cut(s)	925, 928
FokI	GGATG	3 cut(s)	250, 497, 833
Fsp4HI	GCNGC	2 cut(s)	925, 928
GlaI	GCGC	1 cut(s)	923
GluI	GCNGC	2 cut(s)	925, 928
GsuI	CTGGAG	1 cut(s)	1092
HaeII	RGCGCY	1 cut(s)	925
HaeIII	GGCC	3 cut(s)	606, 653, 746
HapII	CCGG	1 cut(s)	747
HgaI	GACGC	1 cut(s)	862
HhaI	GCGC	1 cut(s)	924
Hin1II	CATG	3 cut(s)	191, 799, 1039
Hin6I	GCGC	1 cut(s)	922
HinP1I	GCGC	1 cut(s)	922
HincII	GTYRAC	5 cut(s)	144, 292, 440, 559, 793
HindII	GTYRAC	5 cut(s)	144, 292, 440, 559, 793
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	6 cut(s)	25, 91, 215, 493, 520, 801
HpaII	CCGG	1 cut(s)	747
HphI	GGTGA	2 cut(s)	199, 616
Hpy166II	GTNNAC	6 cut(s)	144, 292, 440, 559, 793, 968
Hpy188I	TCNGA	4 cut(s)	75, 178, 237, 455
Hpy188III	TCNNGA	4 cut(s)	188, 830, 848, 1022
Hpy8I	GTNNAC	6 cut(s)	144, 292, 440, 559, 793, 968
Hpy99I	CGWCG	3 cut(s)	105, 108, 681
HpyAV	CCTTC	7 cut(s)	66, 191, 204, 208, 629, 991, 1132
HpyCH4III	ACNGT	2 cut(s)	296, 677
HpyCH4IV	ACGT	3 cut(s)	156, 256, 984
HpyCH4V	TGCA	5 cut(s)	70, 369, 592, 817, 927
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1106
HpyF3I	CTNAG	5 cut(s)	74, 330, 462, 942, 1131
HpySE526I	ACGT	3 cut(s)	156, 256, 984
Hsp92II	CATG	3 cut(s)	191, 799, 1039
HspAI	GCGC	1 cut(s)	922
KroI	GCCGGC	1 cut(s)	746
KroNI	GCCGGC	1 cut(s)	748
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	7 cut(s)	133, 232, 621, 844, 1000, 1018, 1134
LguI	GCTCTTC	1 cut(s)	124
LmnI	GCTCC	2 cut(s)	384, 1073
Lsp1109I	GCAGC	2 cut(s)	911, 939
LweI	GCATC	2 cut(s)	79, 228
MaeII	ACGT	3 cut(s)	156, 256, 984
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	7 cut(s)	135, 234, 623, 846, 1002, 1020, 1136
MboI	GATC	7 cut(s)	133, 232, 621, 844, 1000, 1018, 1134
MboII	GAAGA	5 cut(s)	111, 176, 790, 893, 944
MflI	RGATCY	3 cut(s)	1000, 1018, 1134
MhlI	GDGCHC	1 cut(s)	358
MlsI	TGGCCA	2 cut(s)	606, 653
MluCI	AATT	2 cut(s)	203, 754
MluNI	TGGCCA	2 cut(s)	606, 653
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	8 cut(s)	254, 331, 356, 471, 574, 1018, 1075, 1137
Mox20I	TGGCCA	2 cut(s)	606, 653
MroNI	GCCGGC	1 cut(s)	746
MscI	TGGCCA	2 cut(s)	606, 653
MseI	TTAA	2 cut(s)	576, 909
MslI	CAYNNNNRTG	2 cut(s)	537, 771
Msp20I	TGGCCA	2 cut(s)	606, 653
MspI	CCGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	1 cut(s)	1106
NaeI	GCCGGC	1 cut(s)	748
NdeII	GATC	7 cut(s)	133, 232, 621, 844, 1000, 1018, 1134
NgoMIV	GCCGGC	1 cut(s)	746
NlaIII	CATG	3 cut(s)	191, 799, 1039
NlaIV	GGNNCC	1 cut(s)	380
NmuCI	GTSAC	1 cut(s)	424
NspV	TTCGAA	1 cut(s)	201
PagI	TCATGA	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	124
PdiI	GCCGGC	1 cut(s)	748
PfeI	GAWTC	5 cut(s)	25, 215, 493, 520, 801
PkrI	GCNGC	2 cut(s)	926, 929
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
Ppu21I	YACGTR	1 cut(s)	257
Psp1406I	AACGTT	2 cut(s)	156, 984
PspN4I	GGNNCC	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	929
PsuI	RGATCY	3 cut(s)	1000, 1018, 1134
RsaI	GTAC	3 cut(s)	255, 659, 692
RsaNI	GTAC	3 cut(s)	254, 658, 691
RseI	CAYNNNNRTG	2 cut(s)	537, 771
SapI	GCTCTTC	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	576, 909
SatI	GCNGC	2 cut(s)	925, 928
Sau3AI	GATC	7 cut(s)	133, 232, 621, 844, 1000, 1018, 1134
ScaI	AGTACT	1 cut(s)	659
SchI	GAGTC	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	358
SfaNI	GCATC	2 cut(s)	79, 228
SfcI	CTRYAG	1 cut(s)	925
SfuI	TTCGAA	1 cut(s)	201
SmiMI	CAYNNNNRTG	2 cut(s)	537, 771
SmlI	CTYRAG	3 cut(s)	137, 170, 1022
SmoI	CTYRAG	3 cut(s)	137, 170, 1022
Sse9I	AATT	2 cut(s)	203, 754
TaaI	ACNGT	2 cut(s)	296, 677
TaiI	ACGT	3 cut(s)	159, 259, 987
TaqI	TCGA	2 cut(s)	201, 980
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	2 cut(s)	203, 754
TatI	WGTACW	2 cut(s)	657, 690
TfiI	GAWTC	5 cut(s)	25, 215, 493, 520, 801
Tru1I	TTAA	2 cut(s)	576, 909
Tru9I	TTAA	2 cut(s)	576, 909
TscAI	CASTG	1 cut(s)	1116
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	2 cut(s)	924, 927
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	3 cut(s)	176, 228, 1024
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	1 cut(s)	1116
XapI	RAATTY	2 cut(s)	203, 754
ZrmI	AGTACT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.