Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006300

Physical Location & Seq

Genomic Coordinates Forward (+)

96410076 .. 96415963

Gene Structure 5888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2613 bp

ATGAAGCTGGTGGTTCAAGTGATGGGGGCTCGAGATCTGCCGGCAATGGATCTAAACGGGCTGAGTGATCCGTACGTGAAGGTGAAGATGGGAAAGCAGAAGTTCAAGACCAAAGTGGTGAAGAAGACCTTAAACCCATATTGGGGTGAAGAGTTCACGTTTCGAGTCGACGACCTCAACGACGAGCTCCTCATCTCTTGTTTGGATGAAGATAAGTACTTCAACGACGACTTCGTGGGCTGCGTCAAGTTCCCTGTTTCCCAAGTCTTCGATTCCCCCAACAAGTGCCTCGACACTTCTTGGCACCCTCTGCAGCCCAAGAGCAAGAAGCCCAAGCACAAGGATTGCGGCGAGATTCTTCTTAATATCTCTCTTAGCACAAACAATGCATTCTCCGACTCCGCTTCCGATGGTGATCATCTAAGGAGGGATTCCGACATTGGAGGTGAATCACCCTCAAGGTTATCCGAAACGGCTTCCCCTCAGAGAGGCAAGCTTGATGAACTTCCATTCTCCAAGGAAGATAAAGAAAAGGAAAAGACTCTTGCCCAGAAATCCCTTGCTGGCCGACTTGTTCAGATGTTCAATAAAAATCCTGACGCCCCTCCAATATCTTCTAACCACTCTAGCAAAGCTGACTTGACTGAGCTTGTTGAAACCAAGGCCGACAATATTTCTGAGGCCACTTCTGAGGATCACTCCTCTTGTGTTCCTTTTGAAGAGCTAATGAAAACAATGCAGTTACGCGATCAGGCTACTGAAACCCCTGAGAACCTACCGGGTGGAGTGCTTCTAGATCAAATGTATGTTACTGAACCCAAACACCTCAACACCTTACTCTTTTCACCCGATTCTACTTTTCCAAAGGCGTTGGCAGATCTCCATGGAACTACAGAATTGGAACAAGGACCCTGGAAATTTGAAAACGATAGCTTAAAAAGAGTGGTTACATATGTTAAGGCAGCTAGCAAATTAATCAAGGCTTGCAAAGGAAGTGAGGACCAAACATATCTCAAAGCCGATGGGAAAGTTTTTGCCGTTTTATCTAGTGTAAGCACTCCTGATGTTCCATATGGGAAAACTTTTAGGACGGAGTTGCTCTACTGCATTACACCTGGGCCTGAGCTGCCATCGGGAGAACAATCTACACGCTTTGTAATATCCTGGCGCATGAATTTTCTGCAGAGCACCATGATGAAAGGAATGATAGAAAATGGAGCTCGGCAAGGTTTAAAGGACAGTTACGAGCAGTATGCAACTTTATTATCGCAGAACGTTAAGGCAGCTGATTCAAAAGACCTTGGATCCAATAAGGACCAGGTTTTGGCATCATTGCAGGCTGAATCCCAGTCTGATTGGAAGCTGGCAGTACAATATTTTGCTAATTTCACTGTGGTCTCCACATTTTTTATTGGATTGTATATGCTGGTACACATCTACCTGGCTACACCCAGCACTATTCAAGGGTTGGAGTTTGTTGGGCTTGACTTGCCAGATTCAATTGGTGAATTTATTGTTTGTGGTGTCCTGGTACTTCAAGGAGAACGTGTGCTGGGTTTGATCTCACGCTTTATGCAGGCCAGAGTGCAGAAAGGCAGTGACCATGGAGTTAAAGCCCGAGGAGATGGTTGGTTGCTAACTGTTGCCTTGATTGAAGGAAGTAATATAGCAGCTGTTGATTCAAGTGGGTTCTCTGATCCATACGTGGTGTTTTCTTGCAATGGAAAAACGAGAACTAGCTCAATCAAGTTCCAGAAATGTGACCCTATGTGGAATGAAATATTTGAGTTTGATGCAATGGATGAGCCTCCTTCAGTGCTGGATGTGGAAATTTATGATTTTGATGGCCCTTTTGATGAAGCTACCTCTCTGGGCCATGCTGAAATCAATTTTGTGAAAACCAATATATCAGATTTAGCTGATATGTGGATTCCTCTTCAAGGAAAGTTAGCTCAGGCTTGTCAGTCAAAACTCCACTTGAGAATTTTCTTAAACAATACAAGAGGTGGCAATGTTGTTAATCACTTTTTAAATAAGATGGAGAAGGAGGTTGGAAAGAAGATTACTGTACGTTCTCCTCAAACAAATTCAGCATTCCAAAAACTCTTTGGGCTTCCACCAGAGGAATTTCTTATCAACGATTTTACATGTCACTTGAAACGAAAAATGCCCCTTCAGGGCCGCCTATTTCTTTCTGCGAGAATAATTGGGTTCCATGCAAATTTATTTGGTCGCAAGACAAAGTTCTTTTTCCTCTGGGAGGATATAGAAGATATTCATATTGTTCCTCCAACTCTGTCATCTATGGGTAGTCCAACTATAGTCATGACTCTGCGGCATGGTAGAGGTATGGATGCAAGGCATGGTGCAAAGACACAGGATGAGGAAGGCAGGCTGAAGTTCCACTTCCAGTCCTTCGTATCCTTCAATGTAGCGAACAGGACAATTATGGCCCTGTGGAAGGCTAGGTCTTTGAGTCCTGAGCAGAAGGTGCAAATAATAGAAGAAGAATCAGAAGTCAAGAACCTCCAAACTGAAGAGAGTGGGTCTTTCTTGGGCCTTGATGATGTCAGCATGTCTGAGGTTTATTCATCCTTGCATTCAGTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 DUF4782 GRAM

Protein Analysis

870

Amino Acids

97.19

Weight (kDa)

5.63

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	2 - 93	1.5e-29	C2 domain
VASt	PF16016	264 - 410	2.6e-32	VAD1 Analog of StAR-related lipid transfer domain
C2	PF00168	545 - 646	1.9e-16	C2 domain
GRAM	PF02893	698 - 805	3.4e-17	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03370 AT1G03370
fragaria_vesca	FvH4_3g00230 FvH4_3g00230 FvH4_3g00230 FvH4_3g00230
malus_domestica	MD05G1362700.v1.1 MD10G1340200.v1.1
prunus_persica	Prupe.4G002600_v2.0.a1 Prupe.4G002600_v2.0.a1 Prupe.4G002600_v2.0.a1 Prupe.4G002600_v2.0.a1 Prupe.4G002600_v2.0.a1 Prupe.4G002600_v2.0.a1
pyrus_communis	pycom05g32910 pycom10g29010
rosa_chinensis	RchiOBHm_Chr5g0000311
rosa_laevigata	RLG00000030858
rosa_multiflora	Rmu_ssc0000385.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075810
rosa_rugosa	Rorug04G0383000 Rorug04G0383100 Rorug04G0383100
rosa_samantha	Rh5AG002300 Rh5CG002600 Rh5DG002600
rosa_wichuraiana	Rw5G000280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	303
AccB7I	CCANNNNNTGG	1 cut(s)	1324
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	1 cut(s)	747
AciI	CCGC	4 cut(s)	348, 402, 2182, 2335
AclI	AACGTT	1 cut(s)	1275
AclWI	GGATC	6 cut(s)	57, 62, 702, 1299, 1312, 1691
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	8 cut(s)	917, 1174, 1508, 1830, 1983, 2086, 2126, 2221
AcuI	CTGAAG	4 cut(s)	1797, 2159, 2417, 2556
AcyI	GRCGYC	1 cut(s)	600
AfaI	GTAC	6 cut(s)	74, 218, 1371, 1431, 1533, 2070
AfiI	CCNNNNNNNGG	8 cut(s)	142, 143, 488, 1324, 1940, 2177, 2260, 2461
AflIII	ACRYGT	2 cut(s)	1546, 2147
AjnI	CCWGG	6 cut(s)	911, 1114, 1163, 1317, 1440, 1527
Alw21I	GWGCWC	3 cut(s)	189, 1190, 1222
Alw26I	GTCTC	1 cut(s)	1402
AlwI	GGATC	6 cut(s)	57, 62, 702, 1299, 1312, 1691
Ama87I	CYCGRG	2 cut(s)	30, 1617
ApeKI	GCWGC	6 cut(s)	240, 313, 962, 1126, 1283, 1670
ApoI	RAATTY	8 cut(s)	917, 1174, 1508, 1830, 1983, 2086, 2126, 2221
AseI	ATTAAT	1 cut(s)	974
Asp700I	GAANNNNTTC	1 cut(s)	2274
AspLEI	GCGC	1 cut(s)	1170
AspS9I	GGNCC	9 cut(s)	908, 1000, 1118, 1315, 1847, 1873, 2179, 2452, 2557
AsuC2I	CCSGG	1 cut(s)	780
AsuHPI	GGTGA	8 cut(s)	94, 130, 158, 425, 444, 458, 837, 1517
AsuNHI	GCTAGC	1 cut(s)	965
AvaI	CYCGRG	2 cut(s)	30, 1617
AvaII	GGWCC	3 cut(s)	908, 1000, 1315
BamHI	GGATCC	1 cut(s)	1304
BanI	GGYRCC	1 cut(s)	303
BanII	GRGCYC	3 cut(s)	31, 189, 1222
BbsI	GAAGAC	2 cut(s)	131, 259
Bbv12I	GWGCWC	3 cut(s)	189, 1190, 1222
BbvI	GCAGC	6 cut(s)	227, 325, 974, 1113, 1295, 1682
BccI	CCATC	8 cut(s)	16, 82, 404, 1016, 1138, 1619, 1838, 2032
BceAI	ACGGC	2 cut(s)	489, 1022
BcgI	CGANNNNNNTGC	2 cut(s)	1235, 1269
BciT130I	CCWGG	6 cut(s)	913, 1116, 1165, 1319, 1442, 1529
BciVI	GTATCC	1 cut(s)	2431
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	1 cut(s)	780
BcoDI	GTCTC	1 cut(s)	1402
BfaI	CTAG	6 cut(s)	627, 794, 966, 1047, 1737, 2466
BfmI	CTRYAG	4 cut(s)	311, 891, 1181, 2319
BfuI	GTATCC	1 cut(s)	2431
BglII	AGATCT	2 cut(s)	34, 877
BisI	GCNGC	9 cut(s)	241, 314, 349, 963, 1127, 1284, 1671, 2182, 2336
BlsI	GCNGC	9 cut(s)	242, 315, 350, 964, 1128, 1285, 1672, 2183, 2337
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	7 cut(s)	780, 913, 1116, 1165, 1319, 1442, 1529
Bme18I	GGWCC	3 cut(s)	908, 1000, 1315
BmeT110I	CYCGRG	2 cut(s)	30, 1617
BmgT120I	GGNCC	9 cut(s)	908, 1000, 1118, 1315, 1847, 1873, 2179, 2452, 2557
BmiI	GGNNCC	4 cut(s)	305, 910, 1306, 2213
BmrFI	CCNGG	7 cut(s)	780, 913, 1116, 1165, 1319, 1442, 1529
BmrI	ACTGGG	1 cut(s)	1342
BmsI	GCATC	3 cut(s)	1337, 1783, 2344
BmtI	GCTAGC	1 cut(s)	969
BmuI	ACTGGG	1 cut(s)	1342
BpiI	GAAGAC	2 cut(s)	131, 259
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
Bpu10I	CCTNAGC	3 cut(s)	1122, 1953, 2481
BpuEI	CTTGAG	2 cut(s)	442, 1999
BpuMI	CCSGG	1 cut(s)	780
BsaAI	YACGTR	2 cut(s)	76, 1705
BsaBI	GATNNNNATC	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	600
BsaI	GGTCTC	1 cut(s)	1402
BsaJI	CCNNGG	8 cut(s)	516, 660, 883, 911, 1115, 1300, 1603, 1618
BsaXI	ACNNNNNCTCC	2 cut(s)	1533, 1563
Bsc4I	CCNNNNNNNGG	8 cut(s)	142, 143, 488, 1324, 1940, 2177, 2260, 2461
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	1348, 2410
Bse3DI	GCAATG	5 cut(s)	51, 1331, 1726, 1803, 2017
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	6 cut(s)	913, 1116, 1165, 1319, 1442, 1529
BseDI	CCNNGG	8 cut(s)	516, 660, 883, 911, 1115, 1300, 1603, 1618
BseGI	GGATG	6 cut(s)	211, 1807, 1828, 2359, 2386, 2591
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	8 cut(s)	142, 143, 488, 1324, 1940, 2177, 2260, 2461
BseMI	GCAATG	5 cut(s)	51, 1331, 1726, 1803, 2017
BseNI	ACTGG	2 cut(s)	1348, 2410
BseRI	GAGGAG	4 cut(s)	179, 691, 1635, 2067
BseXI	GCAGC	6 cut(s)	227, 325, 974, 1113, 1295, 1682
BseYI	CCCAGC	2 cut(s)	1451, 1552
BsgI	GTGCAG	1 cut(s)	1607
Bsh1236I	CGCG	1 cut(s)	747
BshNI	GGYRCC	1 cut(s)	303
BsiHKAI	GWGCWC	3 cut(s)	189, 1190, 1222
BsiHKCI	CYCGRG	2 cut(s)	30, 1617
BsiSI	CCGG	2 cut(s)	41, 779
BsiWI	CGTACG	1 cut(s)	72
BslI	CCNNNNNNNGG	8 cut(s)	142, 143, 488, 1324, 1940, 2177, 2260, 2461
BsmAI	GTCTC	1 cut(s)	1402
BsmI	GAATGC	3 cut(s)	389, 2093, 2599
Bso31I	GGTCTC	1 cut(s)	1402
BsoBI	CYCGRG	2 cut(s)	30, 1617
Bsp1286I	GDGCHC	4 cut(s)	31, 189, 1190, 1222
Bsp19I	CCATGG	2 cut(s)	883, 1603
BspACI	CCGC	4 cut(s)	348, 402, 2182, 2335
BspFNI	CGCG	1 cut(s)	747
BspHI	TCATGA	1 cut(s)	2325
BspLI	GGNNCC	4 cut(s)	305, 910, 1306, 2213
BspMAI	CTGCAG	2 cut(s)	315, 1185
BspOI	GCTAGC	1 cut(s)	969
BspPI	GGATC	6 cut(s)	57, 62, 702, 1299, 1312, 1691
BspQI	GCTCTTC	1 cut(s)	714
BspT107I	GGYRCC	1 cut(s)	303
BspTNI	GGTCTC	1 cut(s)	1402
BsrDI	GCAATG	5 cut(s)	51, 1331, 1726, 1803, 2017
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	1348, 2410
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	8 cut(s)	516, 660, 883, 911, 1115, 1300, 1603, 1618
BssNI	GRCGYC	1 cut(s)	600
BssT1I	CCWWGG	5 cut(s)	516, 660, 883, 1300, 1603
Bst2UI	CCWGG	6 cut(s)	913, 1116, 1165, 1319, 1442, 1529
Bst4CI	ACNGT	4 cut(s)	1241, 1393, 1642, 2068
Bst6I	CTCTTC	4 cut(s)	144, 714, 1941, 2532
BstACI	GRCGYC	1 cut(s)	600
BstAPI	GCANNNNNTGC	2 cut(s)	310, 2491
BstBAI	YACGTR	2 cut(s)	76, 1705
BstC8I	GCNNGC	9 cut(s)	42, 494, 565, 967, 985, 1338, 1365, 1578, 2393
BstDSI	CCRYGG	2 cut(s)	883, 1603
BstENI	CCTNNNNNAGG	4 cut(s)	486, 1938, 2258, 2459
BstF5I	GGATG	6 cut(s)	211, 1807, 1828, 2359, 2386, 2591
BstFNI	CGCG	1 cut(s)	747
BstHHI	GCGC	1 cut(s)	1170
BstMAI	GTCTC	1 cut(s)	1402
BstMWI	GCNNNNNNNGC	4 cut(s)	310, 1126, 1489, 2491
BstNI	CCWGG	6 cut(s)	913, 1116, 1165, 1319, 1442, 1529
BstNSI	RCATGY	2 cut(s)	2151, 2578
BstSCI	CCNGG	7 cut(s)	778, 911, 1114, 1163, 1317, 1440, 1527
BstSFI	CTRYAG	4 cut(s)	311, 891, 1181, 2319
BstUI	CGCG	1 cut(s)	747
BstV1I	GCAGC	6 cut(s)	227, 325, 974, 1113, 1295, 1682
BstV2I	GAAGAC	2 cut(s)	131, 259
BstX2I	RGATCY	4 cut(s)	34, 49, 877, 1304
BstYI	RGATCY	4 cut(s)	34, 49, 877, 1304
BsuI	GTATCC	1 cut(s)	2431
BtgI	CCRYGG	2 cut(s)	883, 1603
BtsCI	GGATG	6 cut(s)	211, 1807, 1828, 2359, 2386, 2591
BtsI	GCAGTG	1 cut(s)	1603
BtsIMutI	CAGTG	3 cut(s)	1389, 1603, 1821
Cac8I	GCNNGC	9 cut(s)	42, 494, 565, 967, 985, 1338, 1365, 1578, 2393
CciI	TCATGA	1 cut(s)	2325
CfoI	GCGC	1 cut(s)	1170
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	9 cut(s)	908, 1000, 1118, 1315, 1847, 1873, 2179, 2452, 2557
CseI	GACGC	2 cut(s)	232, 608
CsiI	ACCWGGT	1 cut(s)	1317
Csp6I	GTAC	6 cut(s)	73, 217, 1370, 1430, 1532, 2069
CviQI	GTAC	6 cut(s)	73, 217, 1370, 1430, 1532, 2069
DraI	TTTAAA	2 cut(s)	1233, 2031
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	4 cut(s)	144, 714, 1941, 2532
EarI	CTCTTC	4 cut(s)	144, 714, 1941, 2532
Ecl136II	GAGCTC	2 cut(s)	187, 1220
Eco130I	CCWWGG	5 cut(s)	516, 660, 883, 1300, 1603
Eco24I	GRGCYC	3 cut(s)	31, 189, 1222
Eco31I	GGTCTC	1 cut(s)	1402
Eco47I	GGWCC	3 cut(s)	908, 1000, 1315
Eco53kI	GAGCTC	2 cut(s)	187, 1220
Eco57I	CTGAAG	4 cut(s)	1797, 2159, 2417, 2556
Eco88I	CYCGRG	2 cut(s)	30, 1617
EcoICRI	GAGCTC	2 cut(s)	187, 1220
EcoNI	CCTNNNNNAGG	4 cut(s)	486, 1938, 2258, 2459
EcoO109I	RGGNCCY	1 cut(s)	908
EcoRII	CCWGG	6 cut(s)	911, 1114, 1163, 1317, 1440, 1527
EcoT14I	CCWWGG	5 cut(s)	516, 660, 883, 1300, 1603
EcoT22I	ATGCAT	1 cut(s)	391
EcoT38I	GRGCYC	3 cut(s)	31, 189, 1222
ErhI	CCWWGG	5 cut(s)	516, 660, 883, 1300, 1603
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 2390, 2422
FauNDI	CATATG	2 cut(s)	952, 1072
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	9 cut(s)	241, 314, 349, 963, 1127, 1284, 1671, 2182, 2336
FokI	GGATG	6 cut(s)	218, 1814, 1835, 2366, 2393, 2578
FriOI	GRGCYC	3 cut(s)	31, 189, 1222
Fsp4HI	GCNGC	9 cut(s)	241, 314, 349, 963, 1127, 1284, 1671, 2182, 2336
FspBI	CTAG	6 cut(s)	627, 794, 966, 1047, 1737, 2466
GlaI	GCGC	1 cut(s)	1169
GluI	GCNGC	9 cut(s)	241, 314, 349, 963, 1127, 1284, 1671, 2182, 2336
GsaI	CCCAGC	2 cut(s)	1455, 1556
HapII	CCGG	2 cut(s)	41, 779
HgaI	GACGC	2 cut(s)	232, 608
HhaI	GCGC	1 cut(s)	1170
Hin1I	GRCGYC	1 cut(s)	600
Hin6I	GCGC	1 cut(s)	1168
HinP1I	GCGC	1 cut(s)	1168
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	494
HpaII	CCGG	2 cut(s)	41, 779
HphI	GGTGA	8 cut(s)	94, 130, 158, 425, 444, 458, 837, 1517
Hpy166II	GTNNAC	3 cut(s)	156, 169, 1432
Hpy8I	GTNNAC	3 cut(s)	156, 169, 1432
Hpy99I	CGWCG	3 cut(s)	173, 185, 230
HpyCH4III	ACNGT	4 cut(s)	1241, 1393, 1642, 2068
HpyCH4IV	ACGT	6 cut(s)	75, 158, 1275, 1546, 1704, 2071
HpyF10VI	GCNNNNNNNGC	4 cut(s)	310, 1126, 1489, 2491
HpySE526I	ACGT	6 cut(s)	75, 158, 1275, 1546, 1704, 2071
Hsp92I	GRCGYC	1 cut(s)	600
HspAI	GCGC	1 cut(s)	1168
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	415
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	2 cut(s)	192, 1217
Lsp1109I	GCAGC	6 cut(s)	227, 325, 974, 1113, 1295, 1682
LweI	GCATC	3 cut(s)	1337, 1783, 2344
MabI	ACCWGGT	1 cut(s)	1317
MaeI	CTAG	6 cut(s)	627, 794, 966, 1047, 1737, 2466
MaeII	ACGT	6 cut(s)	75, 158, 1275, 1546, 1704, 2071
MaeIII	GTNAC	7 cut(s)	741, 808, 946, 1241, 1598, 1760, 2150
MfeI	CAATTG	1 cut(s)	1500
MflI	RGATCY	4 cut(s)	34, 49, 877, 1304
MhlI	GDGCHC	4 cut(s)	31, 189, 1190, 1222
MlyI	GAGTC	5 cut(s)	174, 392, 535, 2323, 2485
MmeI	TCCRAC	6 cut(s)	420, 459, 1449, 2032, 2315, 2339
Mph1103I	ATGCAT	1 cut(s)	391
MroNI	GCCGGC	1 cut(s)	40
MroXI	GAANNNNTTC	1 cut(s)	2274
MslI	CAYNNNNRTG	1 cut(s)	1193
MspA1I	CMGCKG	2 cut(s)	1286, 1673
MspI	CCGG	2 cut(s)	41, 779
MspR9I	CCNGG	7 cut(s)	780, 913, 1116, 1165, 1319, 1442, 1529
MunI	CAATTG	1 cut(s)	1500
Mva1269I	GAATGC	3 cut(s)	389, 2093, 2599
MvaI	CCWGG	6 cut(s)	913, 1116, 1165, 1319, 1442, 1529
MvnI	CGCG	1 cut(s)	747
MwoI	GCNNNNNNNGC	4 cut(s)	310, 1126, 1489, 2491
NaeI	GCCGGC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	780
NcoI	CCATGG	2 cut(s)	883, 1603
NdeI	CATATG	2 cut(s)	952, 1072
NgoMIV	GCCGGC	1 cut(s)	40
NheI	GCTAGC	1 cut(s)	965
NlaIV	GGNNCC	4 cut(s)	305, 910, 1306, 2213
NmeAIII	GCCGAG	1 cut(s)	1201
NmuCI	GTSAC	3 cut(s)	1598, 1760, 2150
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	2 cut(s)	2151, 2578
PaeR7I	CTCGAG	1 cut(s)	30
PagI	TCATGA	1 cut(s)	2325
PciI	ACATGT	1 cut(s)	2147
PciSI	GCTCTTC	1 cut(s)	714
PcsI	WCGNNNNNNNCGW	3 cut(s)	177, 231, 240
PctI	GAATGC	3 cut(s)	389, 2093, 2599
PdiI	GCCGGC	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	2274
Pfl23II	CGTACG	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	1324
PkrI	GCNGC	9 cut(s)	242, 315, 350, 964, 1128, 1285, 1672, 2183, 2337
PleI	GAGTC	5 cut(s)	173, 392, 535, 2323, 2484
PpsI	GAGTC	5 cut(s)	173, 392, 535, 2323, 2484
Ppu21I	YACGTR	2 cut(s)	76, 1705
PpuMI	RGGWCCY	1 cut(s)	908
PscI	ACATGT	1 cut(s)	2147
PshBI	ATTAAT	1 cut(s)	974
Psp124BI	GAGCTC	2 cut(s)	189, 1222
Psp1406I	AACGTT	1 cut(s)	1275
Psp5II	RGGWCCY	1 cut(s)	908
Psp6I	CCWGG	6 cut(s)	911, 1114, 1163, 1317, 1440, 1527
PspFI	CCCAGC	2 cut(s)	1451, 1552
PspGI	CCWGG	6 cut(s)	911, 1114, 1163, 1317, 1440, 1527
PspLI	CGTACG	1 cut(s)	72
PspN4I	GGNNCC	4 cut(s)	305, 910, 1306, 2213
PspPI	GGNCC	9 cut(s)	908, 1000, 1118, 1315, 1847, 1873, 2179, 2452, 2557
PspPPI	RGGWCCY	1 cut(s)	908
PstI	CTGCAG	2 cut(s)	315, 1185
PsuI	RGATCY	4 cut(s)	34, 49, 877, 1304
PvuII	CAGCTG	2 cut(s)	1286, 1673
RsaI	GTAC	6 cut(s)	74, 218, 1371, 1431, 1533, 2070
RsaNI	GTAC	6 cut(s)	73, 217, 1370, 1430, 1532, 2069
RseI	CAYNNNNRTG	1 cut(s)	1193
SacI	GAGCTC	2 cut(s)	189, 1222
SalI	GTCGAC	1 cut(s)	167
SapI	GCTCTTC	1 cut(s)	714
SatI	GCNGC	9 cut(s)	241, 314, 349, 963, 1127, 1284, 1671, 2182, 2336
Sau96I	GGNCC	9 cut(s)	908, 1000, 1118, 1315, 1847, 1873, 2179, 2452, 2557
ScaI	AGTACT	1 cut(s)	218
SchI	GAGTC	5 cut(s)	174, 392, 535, 2323, 2485
ScrFI	CCNGG	7 cut(s)	780, 913, 1116, 1165, 1319, 1442, 1529
SduI	GDGCHC	4 cut(s)	31, 189, 1190, 1222
SexAI	ACCWGGT	1 cut(s)	1317
SfaNI	GCATC	3 cut(s)	1337, 1783, 2344
SfcI	CTRYAG	4 cut(s)	311, 891, 1181, 2319
Sfr274I	CTCGAG	1 cut(s)	30
SinI	GGWCC	3 cut(s)	908, 1000, 1315
SlaI	CTCGAG	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	1193
SmlI	CTYRAG	3 cut(s)	30, 457, 1978
SmoI	CTYRAG	3 cut(s)	30, 457, 1978
SsiI	CCGC	4 cut(s)	348, 402, 2182, 2335
SspI	AATATT	3 cut(s)	673, 1376, 1782
SspMI	CTAG	6 cut(s)	627, 794, 966, 1047, 1737, 2466
SstI	GAGCTC	2 cut(s)	189, 1222
StyD4I	CCNGG	7 cut(s)	778, 911, 1114, 1163, 1317, 1440, 1527
StyI	CCWWGG	5 cut(s)	516, 660, 883, 1300, 1603
TaaI	ACNGT	4 cut(s)	1241, 1393, 1642, 2068
TaiI	ACGT	6 cut(s)	78, 161, 1278, 1549, 1707, 2074
TaqI	TCGA	5 cut(s)	31, 163, 168, 270, 291
TatI	WGTACW	2 cut(s)	216, 1369
TauI	GCSGC	3 cut(s)	351, 2184, 2338
TscAI	CASTG	3 cut(s)	1396, 1603, 1821
TseFI	GTSAC	3 cut(s)	1598, 1760, 2150
TseI	GCWGC	6 cut(s)	240, 313, 962, 1126, 1283, 1670
Tsp45I	GTSAC	3 cut(s)	1598, 1760, 2150
TspGWI	ACGGA	2 cut(s)	60, 1106
TspRI	CASTG	3 cut(s)	1396, 1603, 1821
Van91I	CCANNNNNTGG	1 cut(s)	1324
VpaK11BI	GGWCC	3 cut(s)	908, 1000, 1315
VspI	ATTAAT	1 cut(s)	974
XagI	CCTNNNNNAGG	4 cut(s)	486, 1938, 2258, 2459
XapI	RAATTY	8 cut(s)	917, 1174, 1508, 1830, 1983, 2086, 2126, 2221
XbaI	TCTAGA	1 cut(s)	793
XceI	RCATGY	2 cut(s)	2151, 2578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2105
XhoI	CTCGAG	1 cut(s)	30
XmiI	GTMKAC	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	2274
XspI	CTAG	6 cut(s)	627, 794, 966, 1047, 1737, 2466
ZrmI	AGTACT	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.