MD06G1030600.v1.1

Ent-kaurenoic acid oxidase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
3652336 .. 3655938
3603 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1030600.v1.1.491

Sequence Viewer

Length: 1482 bp
ATGGAGTTTTTGGGTTTCTGGGGTTTTGTTTTCACAGCTTCAGTTGGTGGATTTGGTGCTCTACTTTTGATTCTAAAGAAAGCAAACGAATGGCTGTTCGTGAGAAAATTGGGTGAAAACAAGCACACTCTACCTCCGGGTGACCTGGGCTGGCCTTTCATTGGCAACACCCTGTCGTTCATCAAGGCTCTAAAATCGGATCATCCGGAGTCGTTCATCTCCAATCATGTCAAAAGGTTTGGCAGCACTGGAATTTACAAAGCCTGTTTGTTTGGAAAGCCAACCATAATTGTAACAACAGCTGAAACGTGCAAGCAGGTGCTGATGGATAGTTTACAATTCAAGACCGGTTGGCCAAAATCAACGTCGGAATTAATGGGAAGGAAATCATTTATGAGCCTATCTGGAGAGGAACACAAGCGCCTTCGCAAGCTGACAGCCGCCCCAATCAGTGGTCACAAGGCACTGTCTATGTACCATGAGTATATAAAGGATGTCATAGTCAGTTCATTGGATGAATTAGCGGAAGCGGAGAAGCCCGTTGAGTTCTTGACTGAGATTAGGAAGATCACATTCAGAATAATCATGTTCATTTTCTTGAGTTGTGAGGTTGGTACACCGTTAGAAACCATGGAAAAGGAATATGCTATTATGAATCATGGTCTAAGGGCCATGGCCATTAACCTTCCTGGCTTTGCTTTTCATAAAGCCCTCAAGGCTAGAAGAAGGATGGTTAAGATTATTCAAGGTATTTTAGACGGAAGGCGGGCAAGAAACGAAGCTCAGATATCAAGGGAAAGAACAGATTTGACAGATATGTTAATGGAAACCGAAGACGAAAATGGTAACAAATTAGATGATGAAGAGATTATAGACATAGTCCTCATGTACTTAAACGCTGGTCATGAATCTACAGCCCATGCCACTTTGTGGGCTACTCTCTTCTTACATGAAAATCCAGAATACTACCAAAAAGCCAAGGCAGAACAACTGGAGATTCTGAAGACGGCATCACCAGAAGAAGGATTGAACTTTAAAGGAACTAAACAGATGGAATATCTTTCCAAGGTAATCGATGAAACTCTGCGCATTGTTAACGTCTCATTGTATAGCTACCGAGAGGCTGCTACTGATGTCAAAGTCTCTGGTTACACAATACCAAGGGGCTGGAAAGTAATGATGTGGTATAGAGGTGTCCATTTGAACCCAGAATATTATCCAGATCCAAAGAAGTTTAACCCCTCAAGATGGAATGGAAGTAATGCCAAGGCACGGAGTTTCATTCCCTTTGGAATAGGAAGTAGGCTATGCCCTGGAAGTGATTTGACCAAGCTTGAAATTACTATCTTTCTTCACTATTTTCTCCTTAATTATGAGCTTGAACGTCTCAATCCGGCAATTGGAGTGAGTTATTTACCCCATCCAAGACCCAAAGACAATTGCCTTGCAAAAGTTAAGAAGCTTCCATCATCATCTATATAA

Protein Analysis

494

Amino Acids

56.08

Weight (kDa)

9.02

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 45 - 461 1.5e-68 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 307
Acc16I TGCGCA 1 cut(s) 1088
Acc36I ACCTGC 1 cut(s) 307
AccB7I CCANNNNNTGG 2 cut(s) 452, 930
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 4 cut(s) 441, 524, 530, 766
AclWI GGATC 2 cut(s) 207, 1217
AcoI YGGCCR 2 cut(s) 353, 675
AcsI RAATTY 1 cut(s) 252
AcuI CTGAAG 2 cut(s) 24, 1022
AdeI CACNNNGTG 1 cut(s) 930
AfaI GTAC 3 cut(s) 476, 616, 890
AfiI CCNNNNNNNGG 7 cut(s) 161, 452, 930, 1022, 1248, 1272, 1400
AgeI ACCGGT 1 cut(s) 347
AgsI TTSAA 6 cut(s) 343, 746, 1030, 1204, 1337, 1382
AjnI CCWGG 3 cut(s) 144, 688, 1312
AluBI AGCT 8 cut(s) 38, 302, 433, 782, 1113, 1333, 1378, 1462
AluI AGCT 8 cut(s) 38, 302, 433, 782, 1113, 1333, 1378, 1462
Alw21I GWGCWC 1 cut(s) 61
Alw26I GTCTC 3 cut(s) 1105, 1147, 1391
AlwI GGATC 2 cut(s) 207, 1217
AlwNI CAGNNNCTG 1 cut(s) 322
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 4 cut(s) 152, 353, 669, 675
ApeKI GCWGC 2 cut(s) 243, 1124
ApoI RAATTY 1 cut(s) 252
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AseI ATTAAT 1 cut(s) 374
AsiGI ACCGGT 1 cut(s) 347
AspLEI GCGC 2 cut(s) 423, 1089
AspS9I GGNCC 1 cut(s) 669
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 3 cut(s) 125, 152, 1005
BalI TGGCCA 2 cut(s) 355, 677
BbsI GAAGAC 2 cut(s) 840, 1010
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 2 cut(s) 255, 1111
BccI CCATC 6 cut(s) 319, 724, 1045, 1242, 1428, 1474
BceAI ACGGC 1 cut(s) 1023
BciT130I CCWGG 3 cut(s) 146, 690, 1314
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 3 cut(s) 1105, 1147, 1391
BfaI CTAG 1 cut(s) 720
BfmI CTRYAG 1 cut(s) 912
BfoI RGCGCY 1 cut(s) 424
BfuAI ACCTGC 1 cut(s) 307
BglI GCCNNNNNGGC 1 cut(s) 716
BisI GCNGC 3 cut(s) 244, 441, 1125
BlsI GCNGC 3 cut(s) 245, 442, 1126
Bme1390I CCNGG 4 cut(s) 138, 146, 690, 1314
BmgT120I GGNCC 1 cut(s) 669
BmrFI CCNGG 4 cut(s) 138, 146, 690, 1314
BmsI GCATC 1 cut(s) 1019
BpiI GAAGAC 2 cut(s) 840, 1010
BpmI CTGGAG 2 cut(s) 426, 1013
BpuEI CTTGAG 3 cut(s) 619, 698, 1228
BpuMI CCSGG 1 cut(s) 138
Bsa29I ATCGAT 1 cut(s) 1074
BsaJI CCNNGG 8 cut(s) 145, 630, 672, 978, 1065, 1160, 1266, 1312
BsaWI WCCGGW 2 cut(s) 205, 347
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 7 cut(s) 161, 452, 930, 1022, 1248, 1272, 1400
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 2 cut(s) 253, 996
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 3 cut(s) 146, 690, 1314
BseCI ATCGAT 1 cut(s) 1074
BseDI CCNNGG 8 cut(s) 145, 630, 672, 978, 1065, 1160, 1266, 1312
BseGI GGATG 5 cut(s) 202, 499, 520, 735, 1420
BseLI CCNNNNNNNGG 7 cut(s) 161, 452, 930, 1022, 1248, 1272, 1400
BseMII CTCAG 2 cut(s) 546, 797
BseNI ACTGG 2 cut(s) 253, 996
BseXI GCAGC 2 cut(s) 255, 1111
BshFI GGCC 4 cut(s) 154, 355, 671, 677
BshTI ACCGGT 1 cut(s) 347
BshVI ATCGAT 1 cut(s) 1074
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 4 cut(s) 137, 206, 348, 1394
BslI CCNNNNNNNGG 7 cut(s) 161, 452, 930, 1022, 1248, 1272, 1400
BsmAI GTCTC 3 cut(s) 1105, 1147, 1391
BsmBI CGTCTC 2 cut(s) 1105, 1391
BsnI GGCC 4 cut(s) 154, 355, 671, 677
Bsp1286I GDGCHC 1 cut(s) 61
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 3 cut(s) 199, 567, 1222
Bsp19I CCATGG 2 cut(s) 630, 672
BspACI CCGC 4 cut(s) 441, 524, 530, 766
BspANI GGCC 4 cut(s) 154, 355, 671, 677
BspCNI CTCAG 2 cut(s) 547, 796
BspDI ATCGAT 1 cut(s) 1074
BspEI TCCGGA 1 cut(s) 205
BspHI TCATGA 1 cut(s) 904
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 2 cut(s) 207, 1217
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 2 cut(s) 253, 996
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 8 cut(s) 145, 630, 672, 978, 1065, 1160, 1266, 1312
BssMI GATC 3 cut(s) 199, 567, 1222
BssT1I CCWWGG 6 cut(s) 630, 672, 978, 1065, 1160, 1266
Bst2UI CCWGG 3 cut(s) 146, 690, 1314
Bst4CI ACNGT 2 cut(s) 468, 621
Bst6I CTCTTC 2 cut(s) 858, 947
BstC8I GCNNGC 4 cut(s) 152, 314, 431, 768
BstDEI CTNAG 3 cut(s) 555, 665, 783
BstDSI CCRYGG 2 cut(s) 630, 672
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 5 cut(s) 202, 499, 520, 735, 1420
BstH2I RGCGCY 1 cut(s) 424
BstHHI GCGC 2 cut(s) 423, 1089
BstKTI GATC 3 cut(s) 202, 570, 1225
BstMAI GTCTC 3 cut(s) 1105, 1147, 1391
BstMBI GATC 3 cut(s) 199, 567, 1222
BstMWI GCNNNNNNNGC 1 cut(s) 716
BstNI CCWGG 3 cut(s) 146, 690, 1314
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 4 cut(s) 136, 144, 688, 1312
BstSFI CTRYAG 1 cut(s) 912
BstV1I GCAGC 2 cut(s) 255, 1111
BstV2I GAAGAC 2 cut(s) 840, 1010
BstX2I RGATCY 1 cut(s) 1222
BstXI CCANNNNNNTGG 1 cut(s) 1167
BstYI RGATCY 1 cut(s) 1222
Bsu15I ATCGAT 1 cut(s) 1074
BsuRI GGCC 4 cut(s) 154, 355, 671, 677
BsuTUI ATCGAT 1 cut(s) 1074
BtgI CCRYGG 2 cut(s) 630, 672
BtsCI GGATG 5 cut(s) 202, 499, 520, 735, 1420
BtsIMutI CAGTG 3 cut(s) 246, 457, 464
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 4 cut(s) 152, 314, 431, 768
CaiI CAGNNNCTG 1 cut(s) 322
CciI TCATGA 1 cut(s) 904
CfoI GCGC 2 cut(s) 423, 1089
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 669
ClaI ATCGAT 1 cut(s) 1074
Csp6I GTAC 3 cut(s) 475, 615, 889
CspAI ACCGGT 1 cut(s) 347
CviQI GTAC 3 cut(s) 475, 615, 889
DdeI CTNAG 3 cut(s) 555, 665, 783
DpnI GATC 3 cut(s) 201, 569, 1224
DpnII GATC 3 cut(s) 199, 567, 1222
DraI TTTAAA 1 cut(s) 1036
DraIII CACNNNGTG 1 cut(s) 930
EaeI YGGCCR 2 cut(s) 353, 675
Eam1104I CTCTTC 2 cut(s) 858, 947
EarI CTCTTC 2 cut(s) 858, 947
Eco130I CCWWGG 6 cut(s) 630, 672, 978, 1065, 1160, 1266
Eco32I GATATC 1 cut(s) 789
Eco57I CTGAAG 2 cut(s) 24, 1022
Eco91I GGTNACC 1 cut(s) 140
EcoO65I GGTNACC 1 cut(s) 140
EcoRII CCWGG 3 cut(s) 144, 688, 1312
EcoRV GATATC 1 cut(s) 789
EcoT14I CCWWGG 6 cut(s) 630, 672, 978, 1065, 1160, 1266
ErhI CCWWGG 6 cut(s) 630, 672, 978, 1065, 1160, 1266
Esp3I CGTCTC 2 cut(s) 1105, 1391
FauI CCCGC 1 cut(s) 759
Fnu4HI GCNGC 3 cut(s) 244, 441, 1125
FokI GGATG 5 cut(s) 189, 506, 527, 742, 1407
Fsp4HI GCNGC 3 cut(s) 244, 441, 1125
FspBI CTAG 1 cut(s) 720
FspI TGCGCA 1 cut(s) 1088
GlaI GCGC 2 cut(s) 422, 1088
GluI GCNGC 3 cut(s) 244, 441, 1125
GsuI CTGGAG 2 cut(s) 426, 1013
HaeII RGCGCY 1 cut(s) 424
HaeIII GGCC 4 cut(s) 154, 355, 671, 677
HapII CCGG 4 cut(s) 137, 206, 348, 1394
HhaI GCGC 2 cut(s) 423, 1089
Hin6I GCGC 2 cut(s) 421, 1087
HinP1I GCGC 2 cut(s) 421, 1087
HincII GTYRAC 1 cut(s) 1096
HindII GTYRAC 1 cut(s) 1096
HindIII AAGCTT 2 cut(s) 1331, 1460
HinfI GANTC 5 cut(s) 70, 209, 655, 908, 997
HpaI GTTAAC 1 cut(s) 1096
HpaII CCGG 4 cut(s) 137, 206, 348, 1394
HphI GGTGA 3 cut(s) 125, 152, 1005
Hpy166II GTNNAC 3 cut(s) 335, 617, 1096
Hpy188I TCNGA 5 cut(s) 199, 370, 578, 786, 1002
Hpy8I GTNNAC 3 cut(s) 335, 617, 1096
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 6 cut(s) 375, 434, 695, 720, 756, 1016
HpyCH4III ACNGT 2 cut(s) 468, 621
HpyCH4IV ACGT 4 cut(s) 308, 365, 1098, 1384
HpyCH4V TGCA 2 cut(s) 312, 1448
HpyF10VI GCNNNNNNNGC 1 cut(s) 716
HpyF3I CTNAG 3 cut(s) 555, 665, 783
HpySE526I ACGT 4 cut(s) 308, 365, 1098, 1384
HspAI GCGC 2 cut(s) 421, 1087
Kpn2I TCCGGA 1 cut(s) 205
KspAI GTTAAC 1 cut(s) 1096
Kzo9I GATC 3 cut(s) 199, 567, 1222
Lsp1109I GCAGC 2 cut(s) 255, 1111
LweI GCATC 1 cut(s) 1019
MaeI CTAG 1 cut(s) 720
MaeII ACGT 4 cut(s) 308, 365, 1098, 1384
MaeIII GTNAC 5 cut(s) 140, 292, 455, 845, 1148
MalI GATC 3 cut(s) 201, 569, 1224
MboI GATC 3 cut(s) 199, 567, 1222
MboII GAAGA 8 cut(s) 577, 735, 845, 875, 934, 1015, 1031, 1343
MfeI CAATTG 2 cut(s) 1398, 1438
MflI RGATCY 1 cut(s) 1222
MhlI GDGCHC 1 cut(s) 61
MlsI TGGCCA 2 cut(s) 355, 677
MluNI TGGCCA 2 cut(s) 355, 677
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 8 cut(s) 144, 403, 601, 722, 893, 1114, 1184, 1252
Mox20I TGGCCA 2 cut(s) 355, 677
MroI TCCGGA 1 cut(s) 205
MscI TGGCCA 2 cut(s) 355, 677
Msp20I TGGCCA 2 cut(s) 355, 677
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 4 cut(s) 137, 206, 348, 1394
MspR9I CCNGG 4 cut(s) 138, 146, 690, 1314
MunI CAATTG 2 cut(s) 1398, 1438
MvaI CCWGG 3 cut(s) 146, 690, 1314
MwoI GCNNNNNNNGC 1 cut(s) 716
NciI CCSGG 1 cut(s) 138
NcoI CCATGG 2 cut(s) 630, 672
NdeII GATC 3 cut(s) 199, 567, 1222
NmuCI GTSAC 2 cut(s) 140, 455
NsbI TGCGCA 1 cut(s) 1088
PagI TCATGA 1 cut(s) 904
PaqCI CACCTGC 1 cut(s) 307
PfeI GAWTC 4 cut(s) 70, 655, 908, 997
PflFI GACNNNGTC 1 cut(s) 878
PflMI CCANNNNNTGG 2 cut(s) 452, 930
PinAI ACCGGT 1 cut(s) 347
PkrI GCNGC 3 cut(s) 245, 442, 1126
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PshBI ATTAAT 1 cut(s) 374
Psp6I CCWGG 3 cut(s) 144, 688, 1312
PspEI GGTNACC 1 cut(s) 140
PspGI CCWGG 3 cut(s) 144, 688, 1312
PspPI GGNCC 1 cut(s) 669
PstNI CAGNNNCTG 1 cut(s) 322
PsuI RGATCY 1 cut(s) 1222
PsyI GACNNNGTC 1 cut(s) 878
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 3 cut(s) 476, 616, 890
RsaNI GTAC 3 cut(s) 475, 615, 889
SatI GCNGC 3 cut(s) 244, 441, 1125
Sau3AI GATC 3 cut(s) 199, 567, 1222
Sau96I GGNCC 1 cut(s) 669
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 4 cut(s) 138, 146, 690, 1314
SduI GDGCHC 1 cut(s) 61
SfaNI GCATC 1 cut(s) 1019
SfcI CTRYAG 1 cut(s) 912
SmlI CTYRAG 3 cut(s) 598, 713, 1243
SmoI CTYRAG 3 cut(s) 598, 713, 1243
SsiI CCGC 4 cut(s) 441, 524, 530, 766
SspI AATATT 1 cut(s) 1214
SspMI CTAG 1 cut(s) 720
StyD4I CCNGG 4 cut(s) 136, 144, 688, 1312
StyI CCWWGG 6 cut(s) 630, 672, 978, 1065, 1160, 1266
TaaI ACNGT 2 cut(s) 468, 621
TaiI ACGT 4 cut(s) 311, 368, 1101, 1387
TaqI TCGA 1 cut(s) 1074
TatI WGTACW 1 cut(s) 888
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 4 cut(s) 70, 655, 908, 997
TscAI CASTG 3 cut(s) 253, 457, 471
TseFI GTSAC 2 cut(s) 140, 455
TseI GCWGC 2 cut(s) 243, 1124
Tsp45I GTSAC 2 cut(s) 140, 455
TspGWI ACGGA 2 cut(s) 774, 1288
TspRI CASTG 3 cut(s) 253, 457, 471
Tth111I GACNNNGTC 1 cut(s) 878
Van91I CCANNNNNTGG 2 cut(s) 452, 930
VspI ATTAAT 1 cut(s) 374
XapI RAATTY 1 cut(s) 252
XspI CTAG 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.