Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001030

Physical Location & Seq

Genomic Coordinates Reverse (-)

8475173 .. 8475991

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0108600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTTCTGCACAAGAGTCGGCCTTATTCCCTTATGGACAAGGAAACCTTGGCCTAAATATAATAGGACTAGGAATTATATCTTCAGGACTTCGTATGCACAACAATCGGCCTTCCCTTATGGACAAGGAAACCTTGGCCTAAATATAATAGTGTTTGGCCGCGACCCAAACCCTAATTGCACGCACAAAATCTTCAGAACGGCAGCAGAATCAGTACGAGGCGCCATTGGTGAGAATAGGTGGGAGGCTTTGCCTGCGCCTCCTGATTATTACGACCCTCCAAAGACACGGAGTGCTGCTCTTAGATACTTCTATCATTTTGTGGTTGGCCGGAAGATTTATGTGAACACCTTACAGGCACTCTTCTGTTTCGACGTTGATGAACCCTCCAAAGGATGGGAATGGGTTGGGGATTCAAGATGGCAGCTTGATTTCTGCCATTCAGATGGTGAAGAAGAACTAGGACATGAGCCCGATGACGATGACTTGGCACCTTTCACACCCGCTTATCCCTACCATTCAATTTGCTTTGTGGAACCAGGAAAATGTGGCCTAGCTGTTGGTTACACCACTAAAGGGTTGGTGGGATATGTCTTTGATCACTATGGCAACTTGATGTTTCAACAGCTGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009685 GO:0009686 GO:0009987 GO:0010268 GO:0010817 GO:0012505 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048856 GO:0048878 GO:0051777 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

211

Amino Acids

24.27

Weight (kDa)

6.29

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05160 AT1G05160 AT2G32440 AT2G32440
fragaria_vesca	FvH4_5g21590 FvH4_5g21600 FvH4_7g07920 FvH4_7g07920 FvH4_7g07920 FvH4_7g07920 FvH4_7g07921
malus_domestica	MD02G1229400.v1.1 MD02G1234200.v1.1 MD06G1030600.v1.1 MD06G1030900.v1.1 MD07G1083200.v1.1
prunus_persica	Prupe.2G108400_v2.0.a1 Prupe.2G108400_v2.0.a1 Prupe.2G108600_v2.0.a1 Prupe.2G108700_v2.0.a1 Prupe.2G109600_v2.0.a1 Prupe.2G109600_v2.0.a1 Prupe.2G109700_v2.0.a1 Prupe.2G109700_v2.0.a1 Prupe.5G041400_v2.0.a1 Prupe.5G041500_v2.0.a1
pyrus_communis	pycom02g19800 pycom06g02560 pycom06g02570 pycom07g06640
rosa_chinensis	RchiOBHm_Chr1g0341341 RchiOBHm_Chr1g0341371 RchiOBHm_Chr7g0209061
rosa_laevigata	RLG00000003171 RLG00000029085 RLG00000029087
rosa_multiflora	Rmu_co8489367.1_g000001 Rmu_sc0000047.1_g000011 Rmu_sc0022318.1_g000002 Rmu_sc0029225.1_g000001 Rmu_ssc0000190.1_g000009
rosa_roxburghii	Rroxscaffold_3G00249790 Rroxscaffold_4G00311980 Rroxscaffold_4G00312000
rosa_rugosa	Rorug01G0157000.1 Rorug01G0157100.1 Rorug01G0157200.1 Rorug07G0108600
rosa_samantha	Rh1AG172000 Rh1BG139700 Rh1BG139800 Rh1CG160000 Rh1DG172100 Rh1DG172200 Rh7AG243100 Rh7BG238100 Rh7CG258300 Rh7DG250100
rosa_wichuraiana	Rw1G014330 Rw1G014340 Rw7G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	221, 490
AccB7I	CCANNNNNTGG	1 cut(s)	396
AccII	CGCG	1 cut(s)	162
AciI	CCGC	2 cut(s)	160, 504
AcoI	YGGCCR	2 cut(s)	157, 328
AcuI	CTGAAG	2 cut(s)	67, 178
AcyI	GRCGYC	1 cut(s)	222
AdeI	CACNNNGTG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	3 cut(s)	392, 396, 576
AgsI	TTSAA	3 cut(s)	417, 522, 623
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	3 cut(s)	427, 557, 628
AluI	AGCT	3 cut(s)	427, 557, 628
AoxI	GGCC	7 cut(s)	19, 50, 108, 136, 157, 328, 550
ApeKI	GCWGC	4 cut(s)	203, 296, 424, 628
AspLEI	GCGC	2 cut(s)	224, 259
AsuHPI	GGTGA	2 cut(s)	242, 461
BanI	GGYRCC	2 cut(s)	221, 490
BanII	GRGCYC	1 cut(s)	474
BbvI	GCAGC	4 cut(s)	215, 283, 436, 615
BccI	CCATC	3 cut(s)	390, 414, 440
BceAI	ACGGC	1 cut(s)	216
BcgI	CGANNNNNNTGC	3 cut(s)	32, 87, 121
BciT130I	CCWGG	1 cut(s)	540
BclI	TGATCA	1 cut(s)	598
BfaI	CTAG	4 cut(s)	69, 461, 554, 634
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	5 cut(s)	160, 204, 297, 425, 629
BlsI	GCNGC	5 cut(s)	161, 205, 298, 426, 630
Bme1390I	CCNGG	1 cut(s)	540
BmiI	GGNNCC	3 cut(s)	223, 492, 537
BmrFI	CCNGG	1 cut(s)	540
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	47, 133
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 396, 576
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	47, 133
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	3 cut(s)	392, 396, 576
BseXI	GCAGC	4 cut(s)	215, 283, 436, 615
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	7 cut(s)	21, 52, 110, 138, 159, 330, 552
BshNI	GGYRCC	2 cut(s)	221, 490
BsiSI	CCGG	1 cut(s)	331
BslI	CCNNNNNNNGG	3 cut(s)	392, 396, 576
BsnI	GGCC	7 cut(s)	21, 52, 110, 138, 159, 330, 552
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	1 cut(s)	598
BspACI	CCGC	2 cut(s)	160, 504
BspANI	GGCC	7 cut(s)	21, 52, 110, 138, 159, 330, 552
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	3 cut(s)	223, 492, 537
BspT107I	GGYRCC	2 cut(s)	221, 490
BssECI	CCNNGG	2 cut(s)	47, 133
BssMI	GATC	1 cut(s)	598
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	2 cut(s)	47, 133
Bst2UI	CCWGG	1 cut(s)	540
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	182, 255
BstDEI	CTNAG	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	401
BstFNI	CGCG	1 cut(s)	162
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	224, 259
BstKTI	GATC	1 cut(s)	601
BstMBI	GATC	1 cut(s)	598
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	538
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	4 cut(s)	215, 283, 436, 615
BstXI	CCANNNNNNTGG	1 cut(s)	446
BsuRI	GGCC	7 cut(s)	21, 52, 110, 138, 159, 330, 552
BtsCI	GGATG	1 cut(s)	401
Cac8I	GCNNGC	2 cut(s)	182, 255
CfoI	GCGC	2 cut(s)	224, 259
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	1 cut(s)	467
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	1 cut(s)	302
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	1 cut(s)	600
DpnII	GATC	1 cut(s)	598
DraIII	CACNNNGTG	1 cut(s)	293
EaeI	YGGCCR	2 cut(s)	157, 328
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Eco130I	CCWWGG	2 cut(s)	47, 133
Eco24I	GRGCYC	1 cut(s)	474
Eco57I	CTGAAG	2 cut(s)	67, 178
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	2 cut(s)	47, 133
EcoT38I	GRGCYC	1 cut(s)	474
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
ErhI	CCWWGG	2 cut(s)	47, 133
FaeI	CATG	1 cut(s)	470
FalI	AAGNNNNNCTT	4 cut(s)	31, 63, 117, 149
FatI	CATG	1 cut(s)	466
FauI	CCCGC	1 cut(s)	511
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	5 cut(s)	160, 204, 297, 425, 629
FokI	GGATG	1 cut(s)	408
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	5 cut(s)	160, 204, 297, 425, 629
FspBI	CTAG	4 cut(s)	69, 461, 554, 634
GlaI	GCGC	2 cut(s)	223, 258
GluI	GCNGC	5 cut(s)	160, 204, 297, 425, 629
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	7 cut(s)	21, 52, 110, 138, 159, 330, 552
HapII	CCGG	1 cut(s)	331
HhaI	GCGC	2 cut(s)	224, 259
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	470
Hin6I	GCGC	2 cut(s)	222, 257
HinP1I	GCGC	2 cut(s)	222, 257
HinfI	GANTC	3 cut(s)	15, 209, 413
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	2 cut(s)	242, 461
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	197, 445
Hpy188III	TCNNGA	3 cut(s)	85, 263, 417
Hpy8I	GTNNAC	1 cut(s)	346
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	3 cut(s)	9, 98, 180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	302
HpySE526I	ACGT	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	470
HspAI	GCGC	2 cut(s)	222, 257
KasI	GGCGCC	1 cut(s)	221
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	1 cut(s)	598
LpnPI	CCDG	7 cut(s)	70, 267, 276, 341, 344, 525, 552
Lsp1109I	GCAGC	4 cut(s)	215, 283, 436, 615
MaeI	CTAG	4 cut(s)	69, 461, 554, 634
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	1 cut(s)	600
MboI	GATC	1 cut(s)	598
MboII	GAAGA	6 cut(s)	73, 184, 346, 355, 464, 467
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	3 cut(s)	73, 175, 522
Mly113I	GGCGCC	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	24
MnlI	CCTC	5 cut(s)	212, 238, 270, 288, 397
MslI	CAYNNNNRTG	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	628
MspI	CCGG	1 cut(s)	331
MspR9I	CCNGG	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	540
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	254
NarI	GGCGCC	1 cut(s)	222
NdeII	GATC	1 cut(s)	598
NlaIII	CATG	1 cut(s)	470
NlaIV	GGNNCC	3 cut(s)	223, 492, 537
PfeI	GAWTC	2 cut(s)	209, 413
PflMI	CCANNNNNTGG	1 cut(s)	396
PkrI	GCNGC	5 cut(s)	161, 205, 298, 426, 630
PleI	GAGTC	1 cut(s)	23
PluTI	GGCGCC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	3 cut(s)	223, 492, 537
PvuII	CAGCTG	1 cut(s)	628
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	444
SatI	GCNGC	5 cut(s)	160, 204, 297, 425, 629
Sau3AI	GATC	1 cut(s)	598
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	1 cut(s)	474
SetI	ASST	9 cut(s)	49, 135, 242, 353, 378, 429, 496, 559, 630
SfoI	GGCGCC	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	3 cut(s)	73, 175, 522
SsiI	CCGC	2 cut(s)	160, 504
SspDI	GGCGCC	1 cut(s)	221
SspMI	CTAG	4 cut(s)	69, 461, 554, 634
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	2 cut(s)	47, 133
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	1 cut(s)	372
TasI	AATT	3 cut(s)	73, 175, 522
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	209, 413
TseI	GCWGC	4 cut(s)	203, 296, 424, 628
TspDTI	ATGAA	1 cut(s)	396
TspGWI	ACGGA	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XspI	CTAG	4 cut(s)	69, 461, 554, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.