Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001030

Physical Location & Seq

Genomic Coordinates Forward (+)

3737288 .. 3740919

Gene Structure 3632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1030900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTACCCGGAGTATATAGAGGATGTCATAGTCAGTTCGTTGGATGAATTAGCAAAAGCAAAGAAACCCGTTGAGTTCTTGATAGAGATTAGGAAGATCACATTCAGAATAATCATGTTCATTTTCTTGAGTTGTGAGGTTGGTACACTGTTGGAAACCATGGAAAAGGATTATACTCTTATGAATCATGGTCTAAGGGCCATGGCCATTAACCTTCCTGGCTTTGCTTTTCATAAAGCCCTCAAGGCGGGCAAGAAACGAAGCTCAGATATCAAAGGAAAGAACAGATTGACCGATATGTTAATAGAAACCGAAGACGAGAATGGTAACAAATTAGATGATGAAGAGATTATAGACATAATTCTCATGTACTTAAACGCTGGTCATGAATCTACAGCCCATGCCACTTTGTGGGCTACTCTCTTCTTACATGAACATTCAGAATACTACCAAAAAGCCAAGGCAGAACAACTGGAGATTCTGAAAACGGCATCACCAGAAGAAGGATTTAACTTTAGAGGAACTAAACAGATGGAATATCTTTCCAAGGTAATCGATGAAACGCTGCGCATTGTTAACGTCTCATTGTATAGCTACCGAGAGGCTGCTACTGAGGTCAAAATCTTTGGTTACACAATACCAAGGGGTTGGAAAGTAATGATGTGGTATAGAGGTGTCCATTTGAACCCAGAATATTATCCAGATCCAAAGGAGTTTAATCCCTCCAGATGGAATGAAAGTAATGCCAAGGCAGGGAGTTTCATTCCCTTTGGAATGGGAAGTAGGCTATGCCCTGGAATTGATTTGACCAAGCTTGAAATTACAATATTTCTTCACTATTTTCTCCTTAATTATGAGTTTTTGGGTTCTGGGTTAGGGATGGGGATGTGGGTCGCTTGTGGGGGCTTACAAATAATAGATGGCCTGCATTTGACATTCAACTTGTTTAACTTAGAATGCAGGCTTGAACGACTCAATCCGGCAATTGGAGTGAGTTACTTACCCCATCCAAGACCCAAAGACAATTGTCTTGCAAAAATTAAGAAGCTTACATCACCATCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009685 GO:0009686 GO:0009987 GO:0010268 GO:0010817 GO:0012505 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048856 GO:0048878 GO:0051777 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

356

Amino Acids

40.66

Weight (kDa)

6.24

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	85 - 287	1.8e-48	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05160 AT1G05160 AT2G32440 AT2G32440
fragaria_vesca	FvH4_5g21590 FvH4_5g21600 FvH4_7g07920 FvH4_7g07920 FvH4_7g07920 FvH4_7g07920 FvH4_7g07921
malus_domestica	MD02G1229400.v1.1 MD02G1234200.v1.1 MD06G1030600.v1.1 MD06G1030900.v1.1 MD07G1083200.v1.1
prunus_persica	Prupe.2G108400_v2.0.a1 Prupe.2G108400_v2.0.a1 Prupe.2G108600_v2.0.a1 Prupe.2G108700_v2.0.a1 Prupe.2G109600_v2.0.a1 Prupe.2G109600_v2.0.a1 Prupe.2G109700_v2.0.a1 Prupe.2G109700_v2.0.a1 Prupe.5G041400_v2.0.a1 Prupe.5G041500_v2.0.a1
pyrus_communis	pycom02g19800 pycom06g02560 pycom06g02570 pycom07g06640
rosa_chinensis	RchiOBHm_Chr1g0341341 RchiOBHm_Chr1g0341371 RchiOBHm_Chr7g0209061
rosa_laevigata	RLG00000003171 RLG00000029085 RLG00000029087
rosa_multiflora	Rmu_co8489367.1_g000001 Rmu_sc0000047.1_g000011 Rmu_sc0022318.1_g000002 Rmu_sc0029225.1_g000001 Rmu_ssc0000190.1_g000009
rosa_roxburghii	Rroxscaffold_3G00249790 Rroxscaffold_4G00311980 Rroxscaffold_4G00312000
rosa_rugosa	Rorug01G0157000.1 Rorug01G0157100.1 Rorug01G0157200.1 Rorug07G0108600
rosa_samantha	Rh1AG172000 Rh1BG139700 Rh1BG139800 Rh1CG160000 Rh1DG172100 Rh1DG172200 Rh7AG243100 Rh7BG238100 Rh7CG258300 Rh7DG250100
rosa_wichuraiana	Rw1G014330 Rw1G014340 Rw7G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	569
AccB7I	CCANNNNNTGG	1 cut(s)	411
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	1 cut(s)	698
AcoI	YGGCCR	1 cut(s)	204
AdeI	CACNNNGTG	1 cut(s)	411
AfaI	GTAC	3 cut(s)	5, 145, 371
AfiI	CCNNNNNNNGG	6 cut(s)	247, 411, 503, 729, 753, 986
AgsI	TTSAA	4 cut(s)	685, 818, 940, 968
AjnI	CCWGG	2 cut(s)	217, 793
AluBI	AGCT	4 cut(s)	264, 594, 814, 1048
AluI	AGCT	4 cut(s)	264, 594, 814, 1048
Alw26I	GTCTC	1 cut(s)	586
AlwI	GGATC	1 cut(s)	698
AoxI	GGCC	3 cut(s)	198, 204, 922
ApeKI	GCWGC	2 cut(s)	565, 605
AspLEI	GCGC	1 cut(s)	570
AspS9I	GGNCC	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	8
AsuHPI	GGTGA	2 cut(s)	486, 1047
BalI	TGGCCA	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	552, 592
BccI	CCATC	6 cut(s)	526, 723, 874, 914, 1014, 1066
BceAI	ACGGC	1 cut(s)	504
BciT130I	CCWGG	2 cut(s)	219, 795
BcnI	CCSGG	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	586
BfmI	CTRYAG	1 cut(s)	393
BglI	GCCNNNNNGGC	1 cut(s)	245
BisI	GCNGC	2 cut(s)	566, 606
BlsI	GCNGC	2 cut(s)	567, 607
Bme1390I	CCNGG	3 cut(s)	8, 219, 795
BmgT120I	GGNCC	1 cut(s)	198
BmrFI	CCNGG	3 cut(s)	8, 219, 795
BmsI	GCATC	1 cut(s)	500
BoxI	GACNNNNGTC	1 cut(s)	1026
BpiI	GAAGAC	1 cut(s)	321
BpmI	CTGGAG	2 cut(s)	494, 709
BpuEI	CTTGAG	2 cut(s)	148, 227
BpuMI	CCSGG	1 cut(s)	8
Bsa29I	ATCGAT	1 cut(s)	555
BsaJI	CCNNGG	7 cut(s)	159, 201, 459, 546, 641, 747, 793
Bsc4I	CCNNNNNNNGG	6 cut(s)	247, 411, 503, 729, 753, 986
Bse1I	ACTGG	1 cut(s)	477
BseBI	CCWGG	2 cut(s)	219, 795
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	7 cut(s)	159, 201, 459, 546, 641, 747, 793
BseGI	GGATG	5 cut(s)	28, 49, 885, 891, 1006
BseLI	CCNNNNNNNGG	6 cut(s)	247, 411, 503, 729, 753, 986
BseMII	CTCAG	2 cut(s)	279, 603
BseNI	ACTGG	1 cut(s)	477
BseXI	GCAGC	2 cut(s)	552, 592
BshFI	GGCC	3 cut(s)	200, 206, 924
BshVI	ATCGAT	1 cut(s)	555
BsiSI	CCGG	2 cut(s)	8, 980
BslI	CCNNNNNNNGG	6 cut(s)	247, 411, 503, 729, 753, 986
BsmAI	GTCTC	1 cut(s)	586
BsmBI	CGTCTC	1 cut(s)	586
BsmI	GAATGC	1 cut(s)	962
BsnI	GGCC	3 cut(s)	200, 206, 924
Bsp143I	GATC	2 cut(s)	96, 703
Bsp19I	CCATGG	2 cut(s)	159, 201
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	3 cut(s)	200, 206, 924
BspCNI	CTCAG	2 cut(s)	278, 604
BspDI	ATCGAT	1 cut(s)	555
BspHI	TCATGA	1 cut(s)	385
BspPI	GGATC	1 cut(s)	698
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	7 cut(s)	159, 201, 459, 546, 641, 747, 793
BssMI	GATC	2 cut(s)	96, 703
BssT1I	CCWWGG	6 cut(s)	159, 201, 459, 546, 641, 747
Bst2UI	CCWGG	2 cut(s)	219, 795
Bst4CI	ACNGT	1 cut(s)	150
Bst6I	CTCTTC	2 cut(s)	339, 428
BstC8I	GCNNGC	3 cut(s)	250, 926, 962
BstDEI	CTNAG	4 cut(s)	194, 265, 612, 952
BstDSI	CCRYGG	2 cut(s)	159, 201
BstF5I	GGATG	5 cut(s)	28, 49, 885, 891, 1006
BstHHI	GCGC	1 cut(s)	570
BstKTI	GATC	2 cut(s)	99, 706
BstMAI	GTCTC	1 cut(s)	586
BstMBI	GATC	2 cut(s)	96, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	2 cut(s)	219, 795
BstPAI	GACNNNNGTC	1 cut(s)	1026
BstSCI	CCNGG	3 cut(s)	6, 217, 793
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	2 cut(s)	552, 592
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	703
BstXI	CCANNNNNNTGG	1 cut(s)	648
BstYI	RGATCY	1 cut(s)	703
Bsu15I	ATCGAT	1 cut(s)	555
BsuRI	GGCC	3 cut(s)	200, 206, 924
BsuTUI	ATCGAT	1 cut(s)	555
BtgI	CCRYGG	2 cut(s)	159, 201
BtsCI	GGATG	5 cut(s)	28, 49, 885, 891, 1006
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	3 cut(s)	250, 926, 962
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	570
Cfr13I	GGNCC	1 cut(s)	198
ClaI	ATCGAT	1 cut(s)	555
Csp6I	GTAC	3 cut(s)	4, 144, 370
CviAII	CATG	8 cut(s)	115, 160, 188, 202, 367, 386, 401, 431
CviQI	GTAC	3 cut(s)	4, 144, 370
DdeI	CTNAG	4 cut(s)	194, 265, 612, 952
DpnI	GATC	2 cut(s)	98, 705
DpnII	GATC	2 cut(s)	96, 703
DraIII	CACNNNGTG	1 cut(s)	411
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	339, 428
EarI	CTCTTC	2 cut(s)	339, 428
Eco130I	CCWWGG	6 cut(s)	159, 201, 459, 546, 641, 747
Eco32I	GATATC	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	217, 793
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	6 cut(s)	159, 201, 459, 546, 641, 747
ErhI	CCWWGG	6 cut(s)	159, 201, 459, 546, 641, 747
Esp3I	CGTCTC	1 cut(s)	586
FaeI	CATG	8 cut(s)	118, 163, 191, 205, 370, 389, 404, 434
FatI	CATG	8 cut(s)	114, 159, 187, 201, 366, 385, 400, 430
FauI	CCCGC	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	566, 606
FokI	GGATG	5 cut(s)	35, 56, 892, 898, 993
Fsp4HI	GCNGC	2 cut(s)	566, 606
FspI	TGCGCA	1 cut(s)	569
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	2 cut(s)	566, 606
GsuI	CTGGAG	2 cut(s)	494, 709
HaeIII	GGCC	3 cut(s)	200, 206, 924
HapII	CCGG	2 cut(s)	8, 980
HhaI	GCGC	1 cut(s)	570
Hin1II	CATG	8 cut(s)	118, 163, 191, 205, 370, 389, 404, 434
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HindIII	AAGCTT	2 cut(s)	812, 1046
HinfI	GANTC	4 cut(s)	184, 389, 478, 972
HpaI	GTTAAC	1 cut(s)	577
HpaII	CCGG	2 cut(s)	8, 980
HphI	GGTGA	2 cut(s)	486, 1047
Hpy166II	GTNNAC	2 cut(s)	146, 577
Hpy188I	TCNGA	4 cut(s)	107, 268, 442, 483
Hpy188III	TCNNGA	5 cut(s)	79, 127, 386, 701, 726
Hpy8I	GTNNAC	2 cut(s)	146, 577
HpyAV	CCTTC	2 cut(s)	224, 497
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	3 cut(s)	928, 960, 1034
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	4 cut(s)	194, 265, 612, 952
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	8 cut(s)	118, 163, 191, 205, 370, 389, 404, 434
HspAI	GCGC	1 cut(s)	568
KspAI	GTTAAC	1 cut(s)	577
Kzo9I	GATC	2 cut(s)	96, 703
Lsp1109I	GCAGC	2 cut(s)	552, 592
LweI	GCATC	1 cut(s)	500
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	3 cut(s)	326, 629, 995
MalI	GATC	2 cut(s)	98, 705
MboI	GATC	2 cut(s)	96, 703
MboII	GAAGA	6 cut(s)	106, 326, 356, 415, 512, 824
MfeI	CAATTG	2 cut(s)	984, 1024
MflI	RGATCY	1 cut(s)	703
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	9 cut(s)	47, 332, 360, 798, 819, 850, 984, 1024, 1038
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	966
MmeI	TCCRAC	3 cut(s)	21, 132, 629
MnlI	CCTC	8 cut(s)	13, 130, 251, 512, 595, 607, 665, 733
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	9 cut(s)	210, 302, 374, 510, 576, 717, 849, 948, 1041
Msp20I	TGGCCA	1 cut(s)	206
MspI	CCGG	2 cut(s)	8, 980
MspR9I	CCNGG	3 cut(s)	8, 219, 795
MunI	CAATTG	2 cut(s)	984, 1024
Mva1269I	GAATGC	1 cut(s)	962
MvaI	CCWGG	2 cut(s)	219, 795
MwoI	GCNNNNNNNGC	1 cut(s)	245
NciI	CCSGG	1 cut(s)	8
NcoI	CCATGG	2 cut(s)	159, 201
NdeII	GATC	2 cut(s)	96, 703
NlaIII	CATG	8 cut(s)	118, 163, 191, 205, 370, 389, 404, 434
NsbI	TGCGCA	1 cut(s)	569
PagI	TCATGA	1 cut(s)	385
PctI	GAATGC	1 cut(s)	962
PfeI	GAWTC	3 cut(s)	184, 389, 478
PflMI	CCANNNNNTGG	1 cut(s)	411
PkrI	GCNGC	2 cut(s)	567, 607
PleI	GAGTC	1 cut(s)	966
PpsI	GAGTC	1 cut(s)	966
PshAI	GACNNNNGTC	1 cut(s)	1026
Psp6I	CCWGG	2 cut(s)	217, 793
PspGI	CCWGG	2 cut(s)	217, 793
PspPI	GGNCC	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	703
RsaI	GTAC	3 cut(s)	5, 145, 371
RsaNI	GTAC	3 cut(s)	4, 144, 370
SaqAI	TTAA	9 cut(s)	210, 302, 374, 510, 576, 717, 849, 948, 1041
SatI	GCNGC	2 cut(s)	566, 606
Sau3AI	GATC	2 cut(s)	96, 703
Sau96I	GGNCC	1 cut(s)	198
SchI	GAGTC	1 cut(s)	966
ScrFI	CCNGG	3 cut(s)	8, 219, 795
SfaNI	GCATC	1 cut(s)	500
SfcI	CTRYAG	1 cut(s)	393
SmlI	CTYRAG	2 cut(s)	127, 242
SmoI	CTYRAG	2 cut(s)	127, 242
Sse9I	AATT	9 cut(s)	47, 332, 360, 798, 819, 850, 984, 1024, 1038
SsiI	CCGC	1 cut(s)	248
SspI	AATATT	2 cut(s)	695, 828
StyD4I	CCNGG	3 cut(s)	6, 217, 793
StyI	CCWWGG	6 cut(s)	159, 201, 459, 546, 641, 747
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	1 cut(s)	555
TaqII	GACCGA	1 cut(s)	308
TasI	AATT	9 cut(s)	47, 332, 360, 798, 819, 850, 984, 1024, 1038
TatI	WGTACW	1 cut(s)	369
TfiI	GAWTC	3 cut(s)	184, 389, 478
Tru1I	TTAA	9 cut(s)	210, 302, 374, 510, 576, 717, 849, 948, 1041
Tru9I	TTAA	9 cut(s)	210, 302, 374, 510, 576, 717, 849, 948, 1041
TscAI	CASTG	1 cut(s)	153
TseI	GCWGC	2 cut(s)	565, 605
TspRI	CASTG	1 cut(s)	153
Van91I	CCANNNNNTGG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.