Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001030

Physical Location & Seq

Genomic Coordinates Forward (+)

3111581 .. 3112667

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02570.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTAATAGAAACCGAAGACGAGAATGGTAACAAATTAGATGATGAAGAGATTATAGACATAATTCTCATGTACTTAAACGCTGGTCATGAATCTACAGCCCATGCCACTTTGTGGGCTACTCTCTTCTTACATGAGCATCCAGAATACTACCAAAAAGCCAAGGCAGAACTACTGGAGATTCTGAAAACGGTATCACCAGAAGAAGGATTTAACTTTAGAGGAACTAAACAGATGGAATATCTTTCCAAGGTAATCGATGAAACGCTGCGCATTGTTAACGTCTCATTGTATAGCTACCGAGAGGCTGCTAGTGAGGTCAAAATCTCTGGTTACACAATACCAAGGGGCTGGAAAGTAATGATGTGGTACAGAGGTGTCCATTTGAACCCAAAATATTATCCAGATCCAAAGGAGTTTAATCCCTCCAGATGGAATGAAAGTAATGCCAAGGCAGGAAGTTTCATTCCCTTTGGAATGGGAAGTAGGCTATGCCCTGGAATTGATTTGACCAAGCTTGAAATTACTATATTTCTTCACTATTTTCTCCTTAATTATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009685 GO:0009686 GO:0009987 GO:0010268 GO:0010817 GO:0012505 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048856 GO:0048878 GO:0051777 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

188

Amino Acids

21.75

Weight (kDa)

5.3

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05160 AT1G05160 AT2G32440 AT2G32440
fragaria_vesca	FvH4_5g21590 FvH4_5g21600 FvH4_7g07920 FvH4_7g07920 FvH4_7g07920 FvH4_7g07920 FvH4_7g07921
malus_domestica	MD02G1229400.v1.1 MD02G1234200.v1.1 MD06G1030600.v1.1 MD06G1030900.v1.1 MD07G1083200.v1.1
prunus_persica	Prupe.2G108400_v2.0.a1 Prupe.2G108400_v2.0.a1 Prupe.2G108600_v2.0.a1 Prupe.2G108700_v2.0.a1 Prupe.2G109600_v2.0.a1 Prupe.2G109600_v2.0.a1 Prupe.2G109700_v2.0.a1 Prupe.2G109700_v2.0.a1 Prupe.5G041400_v2.0.a1 Prupe.5G041500_v2.0.a1
pyrus_communis	pycom02g19800 pycom06g02560 pycom06g02570 pycom07g06640
rosa_chinensis	RchiOBHm_Chr1g0341341 RchiOBHm_Chr1g0341371 RchiOBHm_Chr7g0209061
rosa_laevigata	RLG00000003171 RLG00000029085 RLG00000029087
rosa_multiflora	Rmu_co8489367.1_g000001 Rmu_sc0000047.1_g000011 Rmu_sc0022318.1_g000002 Rmu_sc0029225.1_g000001 Rmu_ssc0000190.1_g000009
rosa_roxburghii	Rroxscaffold_3G00249790 Rroxscaffold_4G00311980 Rroxscaffold_4G00312000
rosa_rugosa	Rorug01G0157000.1 Rorug01G0157100.1 Rorug01G0157200.1 Rorug07G0108600
rosa_samantha	Rh1AG172000 Rh1BG139700 Rh1BG139800 Rh1CG160000 Rh1DG172100 Rh1DG172200 Rh7AG243100 Rh7BG238100 Rh7CG258300 Rh7DG250100
rosa_wichuraiana	Rw1G014330 Rw1G014340 Rw7G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	114
AclWI	GGATC	1 cut(s)	401
AdeI	CACNNNGTG	1 cut(s)	114
AfaI	GTAC	2 cut(s)	74, 371
AfiI	CCNNNNNNNGG	3 cut(s)	114, 206, 432
AgsI	TTSAA	2 cut(s)	388, 521
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	2 cut(s)	297, 517
AluI	AGCT	2 cut(s)	297, 517
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	1 cut(s)	401
ApeKI	GCWGC	2 cut(s)	268, 308
AspLEI	GCGC	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	189
BaeI	ACNNNNGTAYC	2 cut(s)	361, 394
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	255, 295
BccI	CCATC	2 cut(s)	229, 426
BciT130I	CCWGG	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	96
BisI	GCNGC	2 cut(s)	269, 309
BlsI	GCNGC	2 cut(s)	270, 310
Bme1390I	CCNGG	1 cut(s)	498
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	2 cut(s)	197, 412
Bsa29I	ATCGAT	1 cut(s)	258
BsaJI	CCNNGG	5 cut(s)	162, 249, 344, 450, 496
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 206, 432
Bse1I	ACTGG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	498
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	5 cut(s)	162, 249, 344, 450, 496
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	3 cut(s)	114, 206, 432
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	255, 295
BshVI	ATCGAT	1 cut(s)	258
BslI	CCNNNNNNNGG	3 cut(s)	114, 206, 432
BsmAI	GTCTC	1 cut(s)	289
BsmBI	CGTCTC	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	406
BspDI	ATCGAT	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	88
BspPI	GGATC	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	5 cut(s)	162, 249, 344, 450, 496
BssMI	GATC	1 cut(s)	406
BssT1I	CCWWGG	4 cut(s)	162, 249, 344, 450
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	42, 131
BstF5I	GGATG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	406
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	255, 295
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	406
Bsu15I	ATCGAT	1 cut(s)	258
BsuTUI	ATCGAT	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	139
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	273
ClaI	ATCGAT	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	73, 370
CviAII	CATG	4 cut(s)	70, 89, 104, 134
CviJI	RGCY	8 cut(s)	101, 119, 161, 297, 308, 351, 490, 517
CviKI_1	RGCY	8 cut(s)	101, 119, 161, 297, 308, 351, 490, 517
CviQI	GTAC	2 cut(s)	73, 370
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
DraIII	CACNNNGTG	1 cut(s)	114
Eam1104I	CTCTTC	2 cut(s)	42, 131
EarI	CTCTTC	2 cut(s)	42, 131
Eco130I	CCWWGG	4 cut(s)	162, 249, 344, 450
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	4 cut(s)	162, 249, 344, 450
ErhI	CCWWGG	4 cut(s)	162, 249, 344, 450
Esp3I	CGTCTC	1 cut(s)	289
FaeI	CATG	4 cut(s)	73, 92, 107, 137
FatI	CATG	4 cut(s)	69, 88, 103, 133
Fnu4HI	GCNGC	2 cut(s)	269, 309
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	2 cut(s)	269, 309
FspBI	CTAG	1 cut(s)	312
FspI	TGCGCA	1 cut(s)	272
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	2 cut(s)	269, 309
GsuI	CTGGAG	2 cut(s)	197, 412
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	4 cut(s)	73, 92, 107, 137
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	2 cut(s)	92, 181
HpaI	GTTAAC	1 cut(s)	280
HphI	GGTGA	1 cut(s)	189
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	4 cut(s)	89, 143, 404, 429
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	4 cut(s)	73, 92, 107, 137
HspAI	GCGC	1 cut(s)	271
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	406
Lsp1109I	GCAGC	2 cut(s)	255, 295
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	2 cut(s)	29, 332
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	5 cut(s)	29, 59, 118, 215, 527
MflI	RGATCY	1 cut(s)	406
MluCI	AATT	5 cut(s)	35, 63, 501, 522, 553
MnlI	CCTC	5 cut(s)	215, 298, 310, 368, 436
MseI	TTAA	6 cut(s)	5, 77, 213, 279, 420, 552
MspR9I	CCNGG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	498
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	4 cut(s)	73, 92, 107, 137
NsbI	TGCGCA	1 cut(s)	272
PagI	TCATGA	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	92, 181
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	270, 310
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	2 cut(s)	74, 371
RsaNI	GTAC	2 cut(s)	73, 370
SaqAI	TTAA	6 cut(s)	5, 77, 213, 279, 420, 552
SatI	GCNGC	2 cut(s)	269, 309
Sau3AI	GATC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	498
SetI	ASST	6 cut(s)	255, 285, 299, 321, 379, 519
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	96
Sse9I	AATT	5 cut(s)	35, 63, 501, 522, 553
SspI	AATATT	1 cut(s)	398
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	4 cut(s)	162, 249, 344, 450
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	1 cut(s)	258
TasI	AATT	5 cut(s)	35, 63, 501, 522, 553
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	92, 181
Tru1I	TTAA	6 cut(s)	5, 77, 213, 279, 420, 552
Tru9I	TTAA	6 cut(s)	5, 77, 213, 279, 420, 552
TseI	GCWGC	2 cut(s)	268, 308
TspDTI	ATGAA	5 cut(s)	60, 105, 276, 453, 454
Van91I	CCANNNNNTGG	1 cut(s)	114
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.