Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001030

Physical Location & Seq

Genomic Coordinates Forward (+)

35516828 .. 35520087

Gene Structure 3260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG172200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGGTGATGGTTTTAGGAGTGGGATCAATGGATTTGGGTTCAATGTGGATGGTTCTTTTGTGCAGTACTAGCTTTGTTGGTGTTTTTCTGACCCTGAAGTGGCTTCTGATGAATGTAAACCGGTGGCTCTATGAAACCCCCTTGGGCGAAAAGCAGTACCGTCTCCCACCTGGTGACTTGGGCTTGCCTTTTATTGGCAACATGTGGTCCTTCCTCAAAGCCTACAAGTCCACTAAACCTGAAACCTTCATCGACTCCTTTGTTTCCAGATTTGGAAAAATTGGAATATACAAGGCTTTCATGTTTGGGAGTCCCAGTATCATTTGTACGGTCCCAGAAACATGTAGAAGAGTTTTGACAGATGATGATGCATTTAAGCCCGGTTGGCCTGCTTCCACCGTTGAACTCATTGGAAAGAAATCATTCGTTTCCATACCCTTTGAAGAGCACAAGCGTCTGAGAAGGCTAACAGCAGCTCCGGTCAATGGTCATGAAGCATTGTCTATGTACATACCATATATTGAGGAGATTGTTATATCTTCTTTGGAAAAATTGGCCACCATGGGACAGATAGAGTTTTTAACTCAACTCAGAAAGATTACTTTCAGAATTATTATGTTCATCTTTCTTAGCACAGAGACTGAGTCTGTGATGGAGGCTCTAGAGAGGGAATATACAGAACTGAACTATGGAGTTAGAGCCATGGCAATCAATATCCCGGGATTTGCTTACCATAAGGCACTTAAGGCTCGGAAAAATCTTGTTGCTATTTTTCAGTCTAGTGTAGATGAGCGCAGAGCCCAAAAGAAGGCTGGCAATTTCTTCAGAAAGAAGAAAGATATGATGGACGCTCTGCTGGATGTTGAAGACGAAGATGGAAGGAAACTTACAGATGAAGAAGTCATTGACATTCTGCTAATGTACTTGAATGCTGGCCATGAGTCTTCTGGCCATACCATCATGTGGGCGACTGTTTTGCTACAAGAACACCCGGAAGTGTTCCAGAAAGCTAAGGCAGAGCAAGAAGAGATTTTAAAGAGGAGGCCACCAACACAGAAGGGACTGACACTTAAGGAATATCGAGAAATGGAATATCTTTCTAAGGTGATAGATGAAACTCTTCGGTTTGTATCATTCTCACTTGTGGTGTTTCGAGAGGCGAATAAAGATGTCAATATAAATGGTTATATCATTCCAAAGGGATGGAAAGCTTTGGCCTGGTTTAGGAGCGTTCACTGGGATTCTGAAATATATCCAAATCCAAGAGAATTTAACCCTTCTAGATGGGATAACTATACACCAAAACCAGCAACTTTTCTTCCCTTCGGAGCTGGAAGCAGGCTGTGCCCGGGAAATGATCTTGCTAAGCTGGAAATTGCTATTTTCCTACACCATTTTCTTCTTGGTTATGAGGTGGAGCGAATTAATCCTCAGTGCCCAATGATCCACTTGCCTCATCCTAGGCCAAAAGACAACTGCTTGGCAAGAATCAAGAAATGTGCACGTTCACGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009653 GO:0009685 GO:0009686 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010268 GO:0010817 GO:0012505 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042445 GO:0042446 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046394 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0051704 GO:0051777 GO:0055088 GO:0055114 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

505

Amino Acids

58.09

Weight (kDa)

8.91

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	56 - 476	5.8e-63	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05160 AT1G05160 AT2G32440 AT2G32440
fragaria_vesca	FvH4_5g21590 FvH4_5g21600 FvH4_7g07920 FvH4_7g07920 FvH4_7g07920 FvH4_7g07920 FvH4_7g07921
malus_domestica	MD02G1229400.v1.1 MD02G1234200.v1.1 MD06G1030600.v1.1 MD06G1030900.v1.1 MD07G1083200.v1.1
prunus_persica	Prupe.2G108400_v2.0.a1 Prupe.2G108400_v2.0.a1 Prupe.2G108600_v2.0.a1 Prupe.2G108700_v2.0.a1 Prupe.2G109600_v2.0.a1 Prupe.2G109600_v2.0.a1 Prupe.2G109700_v2.0.a1 Prupe.2G109700_v2.0.a1 Prupe.5G041400_v2.0.a1 Prupe.5G041500_v2.0.a1
pyrus_communis	pycom02g19800 pycom06g02560 pycom06g02570 pycom07g06640
rosa_chinensis	RchiOBHm_Chr1g0341341 RchiOBHm_Chr1g0341371 RchiOBHm_Chr7g0209061
rosa_laevigata	RLG00000003171 RLG00000029085 RLG00000029087
rosa_multiflora	Rmu_co8489367.1_g000001 Rmu_sc0000047.1_g000011 Rmu_sc0022318.1_g000002 Rmu_sc0029225.1_g000001 Rmu_ssc0000190.1_g000009
rosa_roxburghii	Rroxscaffold_3G00249790 Rroxscaffold_4G00311980 Rroxscaffold_4G00312000
rosa_rugosa	Rorug01G0157000.1 Rorug01G0157100.1 Rorug01G0157200.1 Rorug07G0108600
rosa_samantha	Rh1AG172000 Rh1BG139700 Rh1BG139800 Rh1CG160000 Rh1DG172100 Rh1DG172200 Rh7AG243100 Rh7BG238100 Rh7CG258300 Rh7DG250100
rosa_wichuraiana	Rw1G014330 Rw1G014340 Rw7G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	963
AclWI	GGATC	2 cut(s)	31, 1438
AcoI	YGGCCR	3 cut(s)	555, 934, 949
AcsI	RAATTY	1 cut(s)	1268
AcuI	CTGAAG	2 cut(s)	116, 808
AcvI	CACGTG	1 cut(s)	1511
AdeI	CACNNNGTG	1 cut(s)	173
AfaI	GTAC	5 cut(s)	67, 158, 328, 509, 923
AfiI	CCNNNNNNNGG	6 cut(s)	99, 194, 485, 808, 963, 1224
AflII	CTTAAG	2 cut(s)	743, 1070
AflIII	ACRYGT	2 cut(s)	201, 341
AgeI	ACCGGT	1 cut(s)	120
AgsI	TTSAA	5 cut(s)	42, 404, 443, 866, 928
AjnI	CCWGG	2 cut(s)	169, 1217
AluBI	AGCT	6 cut(s)	72, 476, 1010, 1211, 1331, 1369
AluI	AGCT	6 cut(s)	72, 476, 1010, 1211, 1331, 1369
Alw21I	GWGCWC	2 cut(s)	450, 1504
Alw26I	GTCTC	2 cut(s)	167, 632
Alw44I	GTGCAC	1 cut(s)	1500
AlwI	GGATC	2 cut(s)	31, 1438
AlwNI	CAGNNNCTG	1 cut(s)	641
Ama87I	CYCGRG	2 cut(s)	718, 1348
AoxI	GGCC	7 cut(s)	386, 555, 934, 949, 1043, 1215, 1463
ApaLI	GTGCAC	1 cut(s)	1500
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	1 cut(s)	1268
AseI	ATTAAT	1 cut(s)	1425
AsiGI	ACCGGT	1 cut(s)	120
Asp700I	GAANNNNTTC	2 cut(s)	422, 1119
AspA2I	CCTAGG	1 cut(s)	1460
AspLEI	GCGC	1 cut(s)	795
AspS9I	GGNCC	2 cut(s)	207, 331
AsuC2I	CCSGG	6 cut(s)	381, 719, 720, 992, 1349, 1350
AsuHPI	GGTGA	3 cut(s)	16, 185, 1117
AvaI	CYCGRG	2 cut(s)	718, 1348
AvaII	GGWCC	2 cut(s)	207, 331
AvrII	CCTAGG	1 cut(s)	1460
BaeGI	GKGCMC	3 cut(s)	1349, 1439, 1504
BalI	TGGCCA	3 cut(s)	557, 936, 951
BanII	GRGCYC	1 cut(s)	802
BarI	GAAGNNNNNNTAC	2 cut(s)	871, 903
BbrPI	CACGTG	1 cut(s)	1511
BbsI	GAAGAC	2 cut(s)	873, 936
Bbv12I	GWGCWC	2 cut(s)	450, 1504
BbvI	GCAGC	1 cut(s)	485
BccI	CCATC	7 cut(s)	43, 646, 838, 869, 965, 1197, 1278
BcgI	CGANNNNNNTGC	2 cut(s)	958, 992
BciT130I	CCWGG	2 cut(s)	171, 1219
BcnI	CCSGG	6 cut(s)	381, 719, 720, 992, 1349, 1350
BcoDI	GTCTC	2 cut(s)	167, 632
BfaI	CTAG	5 cut(s)	69, 662, 780, 1281, 1461
BfrI	CTTAAG	2 cut(s)	743, 1070
BglI	GCCNNNNNGGC	1 cut(s)	385
BisI	GCNGC	1 cut(s)	474
BlnI	CCTAGG	1 cut(s)	1460
BlpI	GCTNAGC	1 cut(s)	1365
BlsI	GCNGC	1 cut(s)	475
BmcAI	AGTACT	1 cut(s)	67
Bme1390I	CCNGG	8 cut(s)	171, 381, 719, 720, 992, 1219, 1349, 1350
Bme18I	GGWCC	2 cut(s)	207, 331
BmeT110I	CYCGRG	2 cut(s)	718, 1348
BmgT120I	GGNCC	2 cut(s)	207, 331
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	8 cut(s)	171, 381, 719, 720, 992, 1219, 1349, 1350
BmrI	ACTGGG	2 cut(s)	309, 1246
BmsI	GCATC	1 cut(s)	358
BmuI	ACTGGG	2 cut(s)	309, 1246
BpiI	GAAGAC	2 cut(s)	873, 936
Bpu10I	CCTNAGC	1 cut(s)	1011
Bpu1102I	GCTNAGC	1 cut(s)	1365
BpuMI	CCSGG	6 cut(s)	381, 719, 720, 992, 1349, 1350
BsaAI	YACGTR	1 cut(s)	1511
BsaJI	CCNNGG	6 cut(s)	141, 561, 702, 718, 1348, 1460
BsaWI	WCCGGW	2 cut(s)	120, 478
BsaXI	ACNNNNNCTCC	4 cut(s)	301, 331, 460, 490
Bsc4I	CCNNNNNNNGG	6 cut(s)	99, 194, 485, 808, 963, 1224
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	2 cut(s)	315, 1241
BseBI	CCWGG	2 cut(s)	171, 1219
BseDI	CCNNGG	6 cut(s)	141, 561, 702, 718, 1348, 1460
BseGI	GGATG	4 cut(s)	54, 865, 1208, 1456
BseLI	CCNNNNNNNGG	6 cut(s)	99, 194, 485, 808, 963, 1224
BseMII	CTCAG	4 cut(s)	449, 604, 633, 1445
BseNI	ACTGG	2 cut(s)	315, 1241
BseRI	GAGGAG	2 cut(s)	539, 1054
BseSI	GKGCMC	3 cut(s)	1349, 1439, 1504
BseXI	GCAGC	1 cut(s)	485
BsgI	GTGCAG	1 cut(s)	82
BshFI	GGCC	7 cut(s)	388, 557, 936, 951, 1045, 1217, 1465
BshTI	ACCGGT	1 cut(s)	120
BsiHKAI	GWGCWC	2 cut(s)	450, 1504
BsiHKCI	CYCGRG	2 cut(s)	718, 1348
BsiSI	CCGG	6 cut(s)	121, 381, 479, 719, 992, 1349
BslFI	GGGAC	4 cut(s)	297, 317, 579, 1074
BslI	CCNNNNNNNGG	6 cut(s)	99, 194, 485, 808, 963, 1224
BsmAI	GTCTC	2 cut(s)	167, 632
BsmBI	CGTCTC	1 cut(s)	167
BsmFI	GGGAC	4 cut(s)	297, 317, 579, 1074
BsmI	GAATGC	1 cut(s)	934
BsnI	GGCC	7 cut(s)	388, 557, 936, 951, 1045, 1217, 1465
BsoBI	CYCGRG	2 cut(s)	718, 1348
Bsp1286I	GDGCHC	5 cut(s)	450, 802, 1349, 1439, 1504
Bsp1407I	TGTACA	1 cut(s)	507
Bsp143I	GATC	3 cut(s)	23, 1357, 1443
Bsp1720I	GCTNAGC	1 cut(s)	1365
Bsp19I	CCATGG	2 cut(s)	561, 702
BspANI	GGCC	7 cut(s)	388, 557, 936, 951, 1045, 1217, 1465
BspCNI	CTCAG	4 cut(s)	450, 603, 634, 1444
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	1 cut(s)	333
BspPI	GGATC	2 cut(s)	31, 1438
BspQI	GCTCTTC	1 cut(s)	438
BspTI	CTTAAG	2 cut(s)	743, 1070
BsrFI	RCCGGY	1 cut(s)	120
BsrGI	TGTACA	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	315, 1241
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	6 cut(s)	141, 561, 702, 718, 1348, 1460
BssMI	GATC	3 cut(s)	23, 1357, 1443
BssT1I	CCWWGG	4 cut(s)	141, 561, 702, 1460
Bst2UI	CCWGG	2 cut(s)	171, 1219
Bst4CI	ACNGT	4 cut(s)	161, 331, 400, 973
Bst6I	CTCTTC	4 cut(s)	343, 438, 1020, 1125
BstAFI	CTTAAG	2 cut(s)	743, 1070
BstAPI	GCANNNNNTGC	1 cut(s)	1344
BstAUI	TGTACA	1 cut(s)	507
BstBAI	YACGTR	1 cut(s)	1511
BstC8I	GCNNGC	5 cut(s)	185, 390, 814, 934, 1340
BstDEI	CTNAG	8 cut(s)	458, 590, 629, 642, 1011, 1101, 1365, 1431
BstDSI	CCRYGG	2 cut(s)	561, 702
BstENI	CCTNNNNNAGG	1 cut(s)	1222
BstF5I	GGATG	4 cut(s)	54, 865, 1208, 1456
BstHHI	GCGC	1 cut(s)	795
BstKTI	GATC	3 cut(s)	26, 1360, 1446
BstMAI	GTCTC	2 cut(s)	167, 632
BstMBI	GATC	3 cut(s)	23, 1357, 1443
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 385, 746, 1344
BstNI	CCWGG	2 cut(s)	171, 1219
BstNSI	RCATGY	2 cut(s)	205, 345
BstSCI	CCNGG	8 cut(s)	169, 379, 717, 718, 990, 1217, 1347, 1348
BstSLI	GKGCMC	3 cut(s)	1349, 1439, 1504
BstV1I	GCAGC	1 cut(s)	485
BstV2I	GAAGAC	2 cut(s)	873, 936
BstXI	CCANNNNNNTGG	1 cut(s)	1203
BsuRI	GGCC	7 cut(s)	388, 557, 936, 951, 1045, 1217, 1465
BtgI	CCRYGG	2 cut(s)	561, 702
BtsCI	GGATG	4 cut(s)	54, 865, 1208, 1456
BtsIMutI	CAGTG	2 cut(s)	1234, 1439
Cac8I	GCNNGC	5 cut(s)	185, 390, 814, 934, 1340
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	1 cut(s)	795
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	207, 331
Cfr9I	CCCGGG	2 cut(s)	718, 1348
CseI	GACGC	2 cut(s)	443, 857
CsiI	ACCWGGT	1 cut(s)	169
Csp6I	GTAC	5 cut(s)	66, 157, 327, 508, 922
CspAI	ACCGGT	1 cut(s)	120
CviAII	CATG	8 cut(s)	202, 301, 342, 491, 562, 703, 938, 961
CviQI	GTAC	5 cut(s)	66, 157, 327, 508, 922
DdeI	CTNAG	8 cut(s)	458, 590, 629, 642, 1011, 1101, 1365, 1431
DpnI	GATC	3 cut(s)	25, 1359, 1445
DpnII	GATC	3 cut(s)	23, 1357, 1443
DraI	TTTAAA	1 cut(s)	1035
DraIII	CACNNNGTG	1 cut(s)	173
EaeI	YGGCCR	3 cut(s)	555, 934, 949
Eam1104I	CTCTTC	4 cut(s)	343, 438, 1020, 1125
EarI	CTCTTC	4 cut(s)	343, 438, 1020, 1125
Eco130I	CCWWGG	4 cut(s)	141, 561, 702, 1460
Eco24I	GRGCYC	1 cut(s)	802
Eco47I	GGWCC	2 cut(s)	207, 331
Eco57I	CTGAAG	2 cut(s)	116, 808
Eco72I	CACGTG	1 cut(s)	1511
Eco88I	CYCGRG	2 cut(s)	718, 1348
EcoNI	CCTNNNNNAGG	1 cut(s)	1222
EcoRII	CCWGG	2 cut(s)	169, 1217
EcoT14I	CCWWGG	4 cut(s)	141, 561, 702, 1460
EcoT22I	ATGCAT	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	802
ErhI	CCWWGG	4 cut(s)	141, 561, 702, 1460
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	8 cut(s)	205, 304, 345, 494, 565, 706, 941, 964
FaqI	GGGAC	4 cut(s)	297, 317, 579, 1074
FatI	CATG	8 cut(s)	201, 300, 341, 490, 561, 702, 937, 960
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	4 cut(s)	61, 872, 1215, 1443
FriOI	GRGCYC	1 cut(s)	802
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	5 cut(s)	69, 662, 780, 1281, 1461
GlaI	GCGC	1 cut(s)	794
GluI	GCNGC	1 cut(s)	474
HaeIII	GGCC	7 cut(s)	388, 557, 936, 951, 1045, 1217, 1465
HapII	CCGG	6 cut(s)	121, 381, 479, 719, 992, 1349
HgaI	GACGC	2 cut(s)	443, 857
HhaI	GCGC	1 cut(s)	795
Hin1II	CATG	8 cut(s)	205, 304, 345, 494, 565, 706, 941, 964
Hin6I	GCGC	1 cut(s)	793
HinP1I	GCGC	1 cut(s)	793
HindIII	AAGCTT	1 cut(s)	1209
HinfI	GANTC	6 cut(s)	254, 310, 644, 941, 1241, 1488
HpaII	CCGG	6 cut(s)	121, 381, 479, 719, 992, 1349
HphI	GGTGA	3 cut(s)	16, 185, 1117
Hpy166II	GTNNAC	5 cut(s)	118, 231, 1234, 1502, 1508
Hpy188I	TCNGA	9 cut(s)	90, 108, 459, 593, 608, 753, 827, 1246, 1328
Hpy188III	TCNNGA	8 cut(s)	267, 491, 662, 1003, 1082, 1154, 1281, 1492
Hpy8I	GTNNAC	5 cut(s)	118, 231, 1234, 1502, 1508
HpyAV	CCTTC	8 cut(s)	220, 256, 456, 802, 873, 1051, 1287, 1333
HpyCH4III	ACNGT	4 cut(s)	161, 331, 400, 973
HpyCH4IV	ACGT	2 cut(s)	1504, 1510
HpyCH4V	TGCA	4 cut(s)	63, 371, 1502, 1514
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 385, 746, 1344
HpyF3I	CTNAG	8 cut(s)	458, 590, 629, 642, 1011, 1101, 1365, 1431
HpySE526I	ACGT	2 cut(s)	1504, 1510
Hsp92II	CATG	8 cut(s)	205, 304, 345, 494, 565, 706, 941, 964
HspAI	GCGC	1 cut(s)	793
Kzo9I	GATC	3 cut(s)	23, 1357, 1443
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	4 cut(s)	481, 1227, 1328, 1417
Lsp1109I	GCAGC	1 cut(s)	485
LweI	GCATC	1 cut(s)	358
MabI	ACCWGGT	1 cut(s)	169
MaeI	CTAG	5 cut(s)	69, 662, 780, 1281, 1461
MaeII	ACGT	2 cut(s)	1504, 1510
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	3 cut(s)	25, 1359, 1445
MboI	GATC	3 cut(s)	23, 1357, 1443
MhlI	GDGCHC	5 cut(s)	450, 802, 1349, 1439, 1504
MlsI	TGGCCA	3 cut(s)	557, 936, 951
MluCI	AATT	7 cut(s)	279, 551, 609, 817, 1268, 1374, 1422
MluNI	TGGCCA	3 cut(s)	557, 936, 951
MlyI	GAGTC	4 cut(s)	248, 319, 653, 950
Mox20I	TGGCCA	3 cut(s)	557, 936, 951
Mph1103I	ATGCAT	1 cut(s)	373
MroXI	GAANNNNTTC	2 cut(s)	422, 1119
MscI	TGGCCA	3 cut(s)	557, 936, 951
MseI	TTAA	7 cut(s)	375, 581, 744, 1034, 1071, 1272, 1425
Msp20I	TGGCCA	3 cut(s)	557, 936, 951
MspCI	CTTAAG	2 cut(s)	743, 1070
MspI	CCGG	6 cut(s)	121, 381, 479, 719, 992, 1349
MspR9I	CCNGG	8 cut(s)	171, 381, 719, 720, 992, 1219, 1349, 1350
Mva1269I	GAATGC	1 cut(s)	934
MvaI	CCWGG	2 cut(s)	171, 1219
MwoI	GCNNNNNNNGC	4 cut(s)	69, 385, 746, 1344
NciI	CCSGG	6 cut(s)	381, 719, 720, 992, 1349, 1350
NcoI	CCATGG	2 cut(s)	561, 702
NdeII	GATC	3 cut(s)	23, 1357, 1443
NlaIII	CATG	8 cut(s)	205, 304, 345, 494, 565, 706, 941, 964
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	173
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	2 cut(s)	205, 345
PagI	TCATGA	1 cut(s)	490
PciI	ACATGT	2 cut(s)	201, 341
PciSI	GCTCTTC	1 cut(s)	438
PctI	GAATGC	1 cut(s)	934
PdmI	GAANNNNTTC	2 cut(s)	422, 1119
PfeI	GAWTC	2 cut(s)	1241, 1488
PflFI	GACNNNGTC	1 cut(s)	643
PflMI	CCANNNNNTGG	1 cut(s)	963
PinAI	ACCGGT	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	4 cut(s)	248, 318, 652, 949
PmaCI	CACGTG	1 cut(s)	1511
PmlI	CACGTG	1 cut(s)	1511
PpsI	GAGTC	4 cut(s)	248, 318, 652, 949
Ppu21I	YACGTR	1 cut(s)	1511
PscI	ACATGT	2 cut(s)	201, 341
PshBI	ATTAAT	1 cut(s)	1425
Psp6I	CCWGG	2 cut(s)	169, 1217
PspCI	CACGTG	1 cut(s)	1511
PspGI	CCWGG	2 cut(s)	169, 1217
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	2 cut(s)	207, 331
PstNI	CAGNNNCTG	1 cut(s)	641
PsyI	GACNNNGTC	1 cut(s)	643
RsaI	GTAC	5 cut(s)	67, 158, 328, 509, 923
RsaNI	GTAC	5 cut(s)	66, 157, 327, 508, 922
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	7 cut(s)	375, 581, 744, 1034, 1071, 1272, 1425
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	3 cut(s)	23, 1357, 1443
Sau96I	GGNCC	2 cut(s)	207, 331
ScaI	AGTACT	1 cut(s)	67
SchI	GAGTC	4 cut(s)	248, 319, 653, 950
ScrFI	CCNGG	8 cut(s)	171, 381, 719, 720, 992, 1219, 1349, 1350
SduI	GDGCHC	5 cut(s)	450, 802, 1349, 1439, 1504
SexAI	ACCWGGT	1 cut(s)	169
SfaNI	GCATC	1 cut(s)	358
SinI	GGWCC	2 cut(s)	207, 331
SmaI	CCCGGG	2 cut(s)	720, 1350
SmlI	CTYRAG	2 cut(s)	743, 1070
SmoI	CTYRAG	2 cut(s)	743, 1070
Sse9I	AATT	7 cut(s)	279, 551, 609, 817, 1268, 1374, 1422
SspMI	CTAG	5 cut(s)	69, 662, 780, 1281, 1461
StyD4I	CCNGG	8 cut(s)	169, 379, 717, 718, 990, 1217, 1347, 1348
StyI	CCWWGG	4 cut(s)	141, 561, 702, 1460
TaaI	ACNGT	4 cut(s)	161, 331, 400, 973
TaiI	ACGT	2 cut(s)	1507, 1513
TaqI	TCGA	3 cut(s)	252, 1081, 1153
TasI	AATT	7 cut(s)	279, 551, 609, 817, 1268, 1374, 1422
TatI	WGTACW	3 cut(s)	65, 507, 921
TfiI	GAWTC	2 cut(s)	1241, 1488
Tru1I	TTAA	7 cut(s)	375, 581, 744, 1034, 1071, 1272, 1425
Tru9I	TTAA	7 cut(s)	375, 581, 744, 1034, 1071, 1272, 1425
TscAI	CASTG	2 cut(s)	1241, 1439
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	8 cut(s)	125, 147, 238, 289, 507, 610, 909, 1128
TspMI	CCCGGG	2 cut(s)	718, 1348
TspRI	CASTG	2 cut(s)	1241, 1439
Tth111I	GACNNNGTC	1 cut(s)	643
Van91I	CCANNNNNTGG	1 cut(s)	963
Vha464I	CTTAAG	2 cut(s)	743, 1070
VneI	GTGCAC	1 cut(s)	1500
VpaK11BI	GGWCC	2 cut(s)	207, 331
VspI	ATTAAT	1 cut(s)	1425
XagI	CCTNNNNNAGG	1 cut(s)	1222
XapI	RAATTY	1 cut(s)	1268
XbaI	TCTAGA	2 cut(s)	661, 1280
XceI	RCATGY	2 cut(s)	205, 345
XcmI	CCANNNNNNNNNTGG	3 cut(s)	809, 944, 1400
XmaI	CCCGGG	2 cut(s)	718, 1348
XmaJI	CCTAGG	1 cut(s)	1460
XmnI	GAANNNNTTC	2 cut(s)	422, 1119
XspI	CTAG	5 cut(s)	69, 662, 780, 1281, 1461
ZrmI	AGTACT	1 cut(s)	67
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.