Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029225.1

Orthogroup ID

OG0001030

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1576

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029225.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgcctagagtttctgatgataatacatatactttctttattggcacaccttacaccagatacggtcagacaggaatttacaaggcctatttgtttgggaagccaaccatcattgctgcagcaccggaagtatgtagaaagatcttaactgatgatacacaattcaaggctggctggccaaaatccactactgaactactgggaaagctggcatttatgggcagttctgcagaggaacacaagcgccttcgcaagctgaccgcagctccaatcagtggtcacaaggcactgtctatgtaccatgaatacatcaaggatgccatagtaacttcattggatgaatggtctaaatctgaggagccaattgagttcttgacagagattaggaagttaactttcaaaatagtcatgcacatttttctgagctcggagattggtcccatgttggagaccttagaaaacgattatactattctcaatcatggactaagatccatggccattaacattcctggctttgcttatcataaagcactcaaggctcgaaaaaggttggttaaggctcttcaagtgattgtcgatcaaagaagagaaggaaaggagggtaatctatcaggggaaagaagagatttgatggatttgttactggaagccaaagatgagactggtagaaaactatatgatgaggagatcatagacataatcctcatgtacttaaatgctggtcatgaatcttcagcccatgccacaatgtgggctactctcttcttacatcaaaacccagaatactatcaaaaagccaaggcagagcaagaggagattcttagaagtgtatcaccagaaaatggattgagcttcaaagagactaaacagatggaatatctttctaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009685 GO:0009686 GO:0009987 GO:0010268 GO:0010817 GO:0012505 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048856 GO:0048878 GO:0051777 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

297

Amino Acids

33.98

Weight (kDa)

6.77

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05160 AT1G05160 AT2G32440 AT2G32440
fragaria_vesca	FvH4_5g21590 FvH4_5g21600 FvH4_7g07920 FvH4_7g07920 FvH4_7g07920 FvH4_7g07920 FvH4_7g07921
malus_domestica	MD02G1229400.v1.1 MD02G1234200.v1.1 MD06G1030600.v1.1 MD06G1030900.v1.1 MD07G1083200.v1.1
prunus_persica	Prupe.2G108400_v2.0.a1 Prupe.2G108400_v2.0.a1 Prupe.2G108600_v2.0.a1 Prupe.2G108700_v2.0.a1 Prupe.2G109600_v2.0.a1 Prupe.2G109600_v2.0.a1 Prupe.2G109700_v2.0.a1 Prupe.2G109700_v2.0.a1 Prupe.5G041400_v2.0.a1 Prupe.5G041500_v2.0.a1
pyrus_communis	pycom02g19800 pycom06g02560 pycom06g02570 pycom07g06640
rosa_chinensis	RchiOBHm_Chr1g0341341 RchiOBHm_Chr1g0341371 RchiOBHm_Chr7g0209061
rosa_laevigata	RLG00000003171 RLG00000029085 RLG00000029087
rosa_multiflora	Rmu_co8489367.1_g000001 Rmu_sc0000047.1_g000011 Rmu_sc0022318.1_g000002 Rmu_sc0029225.1_g000001 Rmu_ssc0000190.1_g000009
rosa_roxburghii	Rroxscaffold_3G00249790 Rroxscaffold_4G00311980 Rroxscaffold_4G00312000
rosa_rugosa	Rorug01G0157000.1 Rorug01G0157100.1 Rorug01G0157200.1 Rorug07G0108600
rosa_samantha	Rh1AG172000 Rh1BG139700 Rh1BG139800 Rh1CG160000 Rh1DG172100 Rh1DG172200 Rh7AG243100 Rh7BG238100 Rh7CG258300 Rh7DG250100
rosa_wichuraiana	Rw1G014330 Rw1G014340 Rw7G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	275, 753, 845
AciI	CCGC	1 cut(s)	261
AclWI	GGATC	1 cut(s)	486
AcoI	YGGCCR	2 cut(s)	176, 498
AcsI	RAATTY	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	720
AdeI	CACNNNGTG	1 cut(s)	753
AfaI	GTAC	2 cut(s)	299, 713
AfiI	CCNNNNNNNGG	3 cut(s)	275, 753, 845
AgsI	TTSAA	4 cut(s)	166, 400, 569, 859
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	5 cut(s)	208, 256, 266, 426, 855
AluI	AGCT	5 cut(s)	208, 256, 266, 426, 855
Alw21I	GWGCWC	1 cut(s)	428
Alw26I	GTCTC	3 cut(s)	443, 656, 857
AlwI	GGATC	1 cut(s)	486
AoxI	GGCC	3 cut(s)	84, 176, 498
ApeKI	GCWGC	3 cut(s)	116, 119, 263
ApoI	RAATTY	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	828
AvaII	GGWCC	1 cut(s)	437
BalI	TGGCCA	2 cut(s)	178, 500
BanII	GRGCYC	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	428
BbvI	GCAGC	3 cut(s)	103, 131, 275
BccI	CCATC	3 cut(s)	116, 628, 868
BciT130I	CCWGG	1 cut(s)	513
BcoDI	GTCTC	3 cut(s)	443, 656, 857
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	2 cut(s)	117, 228
BfoI	RGCGCY	1 cut(s)	247
BglII	AGATCT	1 cut(s)	141
BisI	GCNGC	3 cut(s)	117, 120, 264
BlsI	GCNGC	3 cut(s)	118, 121, 265
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	2 cut(s)	360, 439
BmrFI	CCNGG	1 cut(s)	513
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	307
BmuI	ACTGGG	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	521
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	2 cut(s)	495, 801
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 753, 845
Bse1I	ACTGG	3 cut(s)	204, 651, 670
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	2 cut(s)	495, 801
BseGI	GGATG	2 cut(s)	322, 343
BseLI	CCNNNNNNNGG	3 cut(s)	275, 753, 845
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	345, 413
BseNI	ACTGG	3 cut(s)	204, 651, 670
BseRI	GAGGAG	3 cut(s)	371, 701, 830
BseXI	GCAGC	3 cut(s)	103, 131, 275
BshFI	GGCC	3 cut(s)	86, 178, 500
BsiHKAI	GWGCWC	1 cut(s)	428
BsiSI	CCGG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	3 cut(s)	275, 753, 845
BsmAI	GTCTC	3 cut(s)	443, 656, 857
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	3 cut(s)	86, 178, 500
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp143I	GATC	4 cut(s)	141, 491, 580, 690
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	3 cut(s)	86, 178, 500
BspCNI	CTCAG	2 cut(s)	346, 414
BspHI	TCATGA	1 cut(s)	727
BspLI	GGNNCC	2 cut(s)	360, 439
BspMAI	CTGCAG	2 cut(s)	121, 232
BspPI	GGATC	1 cut(s)	486
BspQI	GCTCTTC	1 cut(s)	570
BspTNI	GGTCTC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	3 cut(s)	204, 651, 670
BssECI	CCNNGG	2 cut(s)	495, 801
BssMI	GATC	4 cut(s)	141, 491, 580, 690
BssT1I	CCWWGG	2 cut(s)	495, 801
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	65, 291
Bst6I	CTCTTC	4 cut(s)	570, 583, 619, 770
BstC8I	GCNNGC	4 cut(s)	172, 176, 210, 254
BstDEI	CTNAG	6 cut(s)	354, 422, 454, 488, 824, 888
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	2 cut(s)	322, 343
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	4 cut(s)	144, 494, 583, 693
BstMAI	GTCTC	3 cut(s)	443, 656, 857
BstMBI	GATC	4 cut(s)	141, 491, 580, 690
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	2 cut(s)	117, 228
BstV1I	GCAGC	3 cut(s)	103, 131, 275
BstX2I	RGATCY	2 cut(s)	141, 491
BstYI	RGATCY	2 cut(s)	141, 491
BsuRI	GGCC	3 cut(s)	86, 178, 500
BtgI	CCRYGG	1 cut(s)	495
BtsCI	GGATG	2 cut(s)	322, 343
BtsIMutI	CAGTG	2 cut(s)	280, 287
Cac8I	GCNNGC	4 cut(s)	172, 176, 210, 254
CciI	TCATGA	1 cut(s)	727
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	437
Csp6I	GTAC	2 cut(s)	298, 712
CviAII	CATG	8 cut(s)	302, 409, 442, 482, 496, 709, 728, 743
CviQI	GTAC	2 cut(s)	298, 712
DdeI	CTNAG	6 cut(s)	354, 422, 454, 488, 824, 888
DpnI	GATC	4 cut(s)	143, 493, 582, 692
DpnII	GATC	4 cut(s)	141, 491, 580, 690
DraIII	CACNNNGTG	1 cut(s)	753
EaeI	YGGCCR	2 cut(s)	176, 498
Eam1104I	CTCTTC	4 cut(s)	570, 583, 619, 770
EarI	CTCTTC	4 cut(s)	570, 583, 619, 770
Ecl136II	GAGCTC	1 cut(s)	426
Eco130I	CCWWGG	2 cut(s)	495, 801
Eco147I	AGGCCT	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	428
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	437
Eco53kI	GAGCTC	1 cut(s)	426
Eco57I	CTGAAG	1 cut(s)	720
EcoICRI	GAGCTC	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	2 cut(s)	495, 801
EcoT38I	GRGCYC	1 cut(s)	428
ErhI	CCWWGG	2 cut(s)	495, 801
FaeI	CATG	8 cut(s)	305, 412, 445, 485, 499, 712, 731, 746
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	8 cut(s)	301, 408, 441, 481, 495, 708, 727, 742
Fnu4HI	GCNGC	3 cut(s)	117, 120, 264
FokI	GGATG	2 cut(s)	329, 350
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	3 cut(s)	117, 120, 264
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	3 cut(s)	117, 120, 264
HaeII	RGCGCY	1 cut(s)	247
HaeIII	GGCC	3 cut(s)	86, 178, 500
HapII	CCGG	1 cut(s)	125
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	8 cut(s)	305, 412, 445, 485, 499, 712, 731, 746
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	2 cut(s)	731, 820
HpaI	GTTAAC	1 cut(s)	393
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	828
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	5 cut(s)	16, 69, 355, 423, 430
Hpy188III	TCNNGA	2 cut(s)	373, 728
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	2 cut(s)	257, 587
HpyCH4III	ACNGT	2 cut(s)	65, 291
HpyCH4V	TGCA	3 cut(s)	119, 230, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	6 cut(s)	354, 422, 454, 488, 824, 888
Hsp92II	CATG	8 cut(s)	305, 412, 445, 485, 499, 712, 731, 746
HspAI	GCGC	1 cut(s)	244
KspAI	GTTAAC	1 cut(s)	393
Kzo9I	GATC	4 cut(s)	141, 491, 580, 690
LguI	GCTCTTC	1 cut(s)	570
LmnI	GCTCC	2 cut(s)	271, 358
Lsp1109I	GCAGC	3 cut(s)	103, 131, 275
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	3 cut(s)	278, 325, 642
MalI	GATC	4 cut(s)	143, 493, 582, 692
MboI	GATC	4 cut(s)	141, 491, 580, 690
MboII	GAAGA	5 cut(s)	557, 600, 636, 726, 757
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	2 cut(s)	141, 491
MhlI	GDGCHC	1 cut(s)	428
MlsI	TGGCCA	2 cut(s)	178, 500
MluCI	AATT	3 cut(s)	75, 161, 363
MluNI	TGGCCA	2 cut(s)	178, 500
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	6 cut(s)	226, 349, 595, 679, 716, 808
Mox20I	TGGCCA	2 cut(s)	178, 500
MscI	TGGCCA	2 cut(s)	178, 500
MseI	TTAA	5 cut(s)	146, 392, 504, 558, 716
Msp20I	TGGCCA	2 cut(s)	178, 500
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	513
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	539
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	4 cut(s)	141, 491, 580, 690
NlaIII	CATG	8 cut(s)	305, 412, 445, 485, 499, 712, 731, 746
NlaIV	GGNNCC	2 cut(s)	360, 439
NmuCI	GTSAC	1 cut(s)	278
PagI	TCATGA	1 cut(s)	727
PceI	AGGCCT	1 cut(s)	86
PciSI	GCTCTTC	1 cut(s)	570
PfeI	GAWTC	2 cut(s)	731, 820
PflMI	CCANNNNNTGG	3 cut(s)	275, 753, 845
PkrI	GCNGC	3 cut(s)	118, 121, 265
Psp124BI	GAGCTC	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	2 cut(s)	360, 439
PspPI	GGNCC	1 cut(s)	437
PstI	CTGCAG	2 cut(s)	121, 232
PsuI	RGATCY	2 cut(s)	141, 491
RsaI	GTAC	2 cut(s)	299, 713
RsaNI	GTAC	2 cut(s)	298, 712
SacI	GAGCTC	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	570
SaqAI	TTAA	5 cut(s)	146, 392, 504, 558, 716
SatI	GCNGC	3 cut(s)	117, 120, 264
Sau3AI	GATC	4 cut(s)	141, 491, 580, 690
Sau96I	GGNCC	1 cut(s)	437
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	1 cut(s)	428
SetI	ASST	8 cut(s)	52, 210, 258, 268, 428, 455, 554, 857
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	2 cut(s)	117, 228
SinI	GGWCC	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	3 cut(s)	75, 161, 363
SseBI	AGGCCT	1 cut(s)	86
SsiI	CCGC	1 cut(s)	261
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	428
StuI	AGGCCT	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	2 cut(s)	495, 801
TaaI	ACNGT	2 cut(s)	65, 291
TaqI	TCGA	2 cut(s)	544, 579
TasI	AATT	3 cut(s)	75, 161, 363
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	2 cut(s)	731, 820
Tru1I	TTAA	5 cut(s)	146, 392, 504, 558, 716
Tru9I	TTAA	5 cut(s)	146, 392, 504, 558, 716
TscAI	CASTG	2 cut(s)	280, 294
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	3 cut(s)	116, 119, 263
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	4 cut(s)	318, 321, 354, 744
TspRI	CASTG	2 cut(s)	280, 294
Van91I	CCANNNNNTGG	3 cut(s)	275, 753, 845
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	1 cut(s)	75
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.