Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001030

Physical Location & Seq

Genomic Coordinates Forward (+)

3105549 .. 3106287

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGATCCTAAAAAGAGCAAATGAATGGCTGTTTGTGAGAAAATTGGGTGAAAACAAGCACACTCTACCTCCGGGTGACCTGGGCTGGCCTTTCATTGGAAACACCTTGTCGTTCATCAAGGCAATAAAATCCGATCACCCGGAGTCGTTCATCTCCAATTATGTCAAAAGGTTTGGCCGCACAGGAATTTACAAGGCCTACTTGTTTGGAAAGCCAACCATAATTGTAACAACACCTGAAACATGCAAGCAGGTGCTGATGGATAGTTTACAATTCAAGACCGGTTGGCCAAAATCAACGTCAGAATTAATGGGAAGGAAATCATTTGTGGGCCTATCTGAAGAGGAACACAAGCGCCTTCGCAAGCTGACAGCCGCCCCAATCAGTGGTCACAAGGCACTGTCCATGTACCAGGAGTATATAGAGGTTGTCATAGTTAGTTCGTTGGATGAATTGGCAAAAGCAAAGAAGCCCGTTGAGTTTTTGACTGAGATTAGGAAGATCACATTCAAAATAATCATGTTCATTGTCTTGAGTTGCGAGGTTGGTACACTGTTGGAAACCATGGAAAAGGATTATACTCTTATGAATCATGGTCTAAGGGCCATGGCCATTAACCTTCCTGGCTTTGCTTTTCACAAAGCCCTCAAGGTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009685 GO:0009686 GO:0009987 GO:0010268 GO:0010817 GO:0012505 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048856 GO:0048878 GO:0051777 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

220

Amino Acids

24.96

Weight (kDa)

9.67

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05160 AT1G05160 AT2G32440 AT2G32440
fragaria_vesca	FvH4_5g21590 FvH4_5g21600 FvH4_7g07920 FvH4_7g07920 FvH4_7g07920 FvH4_7g07920 FvH4_7g07921
malus_domestica	MD02G1229400.v1.1 MD02G1234200.v1.1 MD06G1030600.v1.1 MD06G1030900.v1.1 MD07G1083200.v1.1
prunus_persica	Prupe.2G108400_v2.0.a1 Prupe.2G108400_v2.0.a1 Prupe.2G108600_v2.0.a1 Prupe.2G108700_v2.0.a1 Prupe.2G109600_v2.0.a1 Prupe.2G109600_v2.0.a1 Prupe.2G109700_v2.0.a1 Prupe.2G109700_v2.0.a1 Prupe.5G041400_v2.0.a1 Prupe.5G041500_v2.0.a1
pyrus_communis	pycom02g19800 pycom06g02560 pycom06g02570 pycom07g06640
rosa_chinensis	RchiOBHm_Chr1g0341341 RchiOBHm_Chr1g0341371 RchiOBHm_Chr7g0209061
rosa_laevigata	RLG00000003171 RLG00000029085 RLG00000029087
rosa_multiflora	Rmu_co8489367.1_g000001 Rmu_sc0000047.1_g000011 Rmu_sc0022318.1_g000002 Rmu_sc0029225.1_g000001 Rmu_ssc0000190.1_g000009
rosa_roxburghii	Rroxscaffold_3G00249790 Rroxscaffold_4G00311980 Rroxscaffold_4G00312000
rosa_rugosa	Rorug01G0157000.1 Rorug01G0157100.1 Rorug01G0157200.1 Rorug07G0108600
rosa_samantha	Rh1AG172000 Rh1BG139700 Rh1BG139800 Rh1CG160000 Rh1DG172100 Rh1DG172200 Rh7AG243100 Rh7BG238100 Rh7CG258300 Rh7DG250100
rosa_wichuraiana	Rw1G014330 Rw1G014340 Rw7G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	241
AccB7I	CCANNNNNTGG	1 cut(s)	386
AciI	CCGC	2 cut(s)	178, 375
AcoI	YGGCCR	3 cut(s)	175, 287, 609
AcsI	RAATTY	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	2 cut(s)	410, 550
AfiI	CCNNNNNNNGG	2 cut(s)	95, 386
AgeI	ACCGGT	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	277, 511
AjnI	CCWGG	3 cut(s)	78, 411, 622
AluBI	AGCT	1 cut(s)	367
AluI	AGCT	1 cut(s)	367
AlwNI	CAGNNNCTG	1 cut(s)	256
AoxI	GGCC	7 cut(s)	86, 175, 195, 287, 331, 603, 609
ApoI	RAATTY	1 cut(s)	186
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AseI	ATTAAT	1 cut(s)	308
AsiGI	ACCGGT	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	357
AspS9I	GGNCC	2 cut(s)	331, 603
AsuC2I	CCSGG	2 cut(s)	72, 140
AsuHPI	GGTGA	3 cut(s)	59, 86, 128
BalI	TGGCCA	2 cut(s)	289, 611
BccI	CCATC	1 cut(s)	253
BciT130I	CCWGG	3 cut(s)	80, 413, 624
BcnI	CCSGG	2 cut(s)	72, 140
BfoI	RGCGCY	1 cut(s)	358
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	2 cut(s)	178, 375
BlsI	GCNGC	2 cut(s)	179, 376
Bme1390I	CCNGG	5 cut(s)	72, 80, 140, 413, 624
BmgT120I	GGNCC	2 cut(s)	331, 603
BmrFI	CCNGG	5 cut(s)	72, 80, 140, 413, 624
BpuEI	CTTGAG	2 cut(s)	553, 632
BpuMI	CCSGG	2 cut(s)	72, 140
BsaJI	CCNNGG	3 cut(s)	79, 564, 606
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 386
Bse118I	RCCGGY	1 cut(s)	281
BseBI	CCWGG	3 cut(s)	80, 413, 624
BseDI	CCNNGG	3 cut(s)	79, 564, 606
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	2 cut(s)	95, 386
BseMII	CTCAG	1 cut(s)	480
BshFI	GGCC	7 cut(s)	88, 177, 197, 289, 333, 605, 611
BshTI	ACCGGT	1 cut(s)	281
BsiSI	CCGG	3 cut(s)	71, 140, 282
BslI	CCNNNNNNNGG	2 cut(s)	95, 386
BsnI	GGCC	7 cut(s)	88, 177, 197, 289, 333, 605, 611
Bsp143I	GATC	3 cut(s)	3, 133, 501
Bsp19I	CCATGG	2 cut(s)	564, 606
BspACI	CCGC	2 cut(s)	178, 375
BspANI	GGCC	7 cut(s)	88, 177, 197, 289, 333, 605, 611
BspCNI	CTCAG	1 cut(s)	481
BspMI	ACCTGC	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	281
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	3 cut(s)	79, 564, 606
BssMI	GATC	3 cut(s)	3, 133, 501
BssT1I	CCWWGG	2 cut(s)	564, 606
Bst2UI	CCWGG	3 cut(s)	80, 413, 624
Bst4CI	ACNGT	2 cut(s)	402, 555
Bst6I	CTCTTC	1 cut(s)	336
BstC8I	GCNNGC	3 cut(s)	86, 248, 365
BstDEI	CTNAG	2 cut(s)	489, 599
BstDSI	CCRYGG	2 cut(s)	564, 606
BstEII	GGTNACC	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	454
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	3 cut(s)	6, 136, 504
BstMBI	GATC	3 cut(s)	3, 133, 501
BstNI	CCWGG	3 cut(s)	80, 413, 624
BstNSI	RCATGY	1 cut(s)	246
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	5 cut(s)	70, 78, 138, 411, 622
BsuRI	GGCC	7 cut(s)	88, 177, 197, 289, 333, 605, 611
BtgI	CCRYGG	2 cut(s)	564, 606
BtsCI	GGATG	1 cut(s)	454
BtsIMutI	CAGTG	3 cut(s)	391, 398, 551
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	3 cut(s)	86, 248, 365
CaiI	CAGNNNCTG	1 cut(s)	256
CfoI	GCGC	1 cut(s)	357
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	331, 603
Csp6I	GTAC	2 cut(s)	409, 549
CspAI	ACCGGT	1 cut(s)	281
CviAII	CATG	6 cut(s)	243, 406, 520, 565, 593, 607
CviQI	GTAC	2 cut(s)	409, 549
DdeI	CTNAG	2 cut(s)	489, 599
DpnI	GATC	3 cut(s)	5, 135, 503
DpnII	GATC	3 cut(s)	3, 133, 501
EaeI	YGGCCR	3 cut(s)	175, 287, 609
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	2 cut(s)	564, 606
Eco147I	AGGCCT	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	360
Eco91I	GGTNACC	1 cut(s)	74
EcoO65I	GGTNACC	1 cut(s)	74
EcoRII	CCWGG	3 cut(s)	78, 411, 622
EcoT14I	CCWWGG	2 cut(s)	564, 606
ErhI	CCWWGG	2 cut(s)	564, 606
FaeI	CATG	6 cut(s)	246, 409, 523, 568, 596, 610
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	6 cut(s)	242, 405, 519, 564, 592, 606
Fnu4HI	GCNGC	2 cut(s)	178, 375
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	2 cut(s)	178, 375
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	2 cut(s)	178, 375
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	7 cut(s)	88, 177, 197, 289, 333, 605, 611
HapII	CCGG	3 cut(s)	71, 140, 282
HhaI	GCGC	1 cut(s)	357
Hin1II	CATG	6 cut(s)	246, 409, 523, 568, 596, 610
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HinfI	GANTC	2 cut(s)	143, 589
HpaII	CCGG	3 cut(s)	71, 140, 282
HphI	GGTGA	3 cut(s)	59, 86, 128
Hpy166II	GTNNAC	2 cut(s)	269, 551
Hpy188I	TCNGA	4 cut(s)	133, 304, 340, 656
Hpy188III	TCNNGA	2 cut(s)	277, 532
Hpy8I	GTNNAC	2 cut(s)	269, 551
HpyAV	CCTTC	3 cut(s)	309, 368, 629
HpyCH4III	ACNGT	2 cut(s)	402, 555
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	1 cut(s)	246
HpyF3I	CTNAG	2 cut(s)	489, 599
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	6 cut(s)	246, 409, 523, 568, 596, 610
HspAI	GCGC	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	3, 133, 501
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	3 cut(s)	74, 226, 389
MalI	GATC	3 cut(s)	5, 135, 503
MboI	GATC	3 cut(s)	3, 133, 501
MboII	GAAGA	2 cut(s)	353, 511
MlsI	TGGCCA	2 cut(s)	289, 611
MluCI	AATT	7 cut(s)	41, 157, 186, 222, 272, 305, 452
MluNI	TGGCCA	2 cut(s)	289, 611
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	2 cut(s)	426, 537
MnlI	CCTC	5 cut(s)	78, 337, 418, 535, 656
Mox20I	TGGCCA	2 cut(s)	289, 611
MscI	TGGCCA	2 cut(s)	289, 611
MseI	TTAA	2 cut(s)	308, 615
Msp20I	TGGCCA	2 cut(s)	289, 611
MspI	CCGG	3 cut(s)	71, 140, 282
MspR9I	CCNGG	5 cut(s)	72, 80, 140, 413, 624
MvaI	CCWGG	3 cut(s)	80, 413, 624
NciI	CCSGG	2 cut(s)	72, 140
NcoI	CCATGG	2 cut(s)	564, 606
NdeII	GATC	3 cut(s)	3, 133, 501
NlaIII	CATG	6 cut(s)	246, 409, 523, 568, 596, 610
NmuCI	GTSAC	2 cut(s)	74, 389
NspI	RCATGY	1 cut(s)	246
PaqCI	CACCTGC	1 cut(s)	241
PceI	AGGCCT	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	589
PflMI	CCANNNNNTGG	1 cut(s)	386
PinAI	ACCGGT	1 cut(s)	281
PkrI	GCNGC	2 cut(s)	179, 376
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PshBI	ATTAAT	1 cut(s)	308
Psp6I	CCWGG	3 cut(s)	78, 411, 622
PspEI	GGTNACC	1 cut(s)	74
PspGI	CCWGG	3 cut(s)	78, 411, 622
PspPI	GGNCC	2 cut(s)	331, 603
PstNI	CAGNNNCTG	1 cut(s)	256
RsaI	GTAC	2 cut(s)	410, 550
RsaNI	GTAC	2 cut(s)	409, 549
SaqAI	TTAA	2 cut(s)	308, 615
SatI	GCNGC	2 cut(s)	178, 375
Sau3AI	GATC	3 cut(s)	3, 133, 501
Sau96I	GGNCC	2 cut(s)	331, 603
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	5 cut(s)	72, 80, 140, 413, 624
SmlI	CTYRAG	2 cut(s)	532, 647
SmoI	CTYRAG	2 cut(s)	532, 647
Sse9I	AATT	7 cut(s)	41, 157, 186, 222, 272, 305, 452
SseBI	AGGCCT	1 cut(s)	197
SsiI	CCGC	2 cut(s)	178, 375
StuI	AGGCCT	1 cut(s)	197
StyD4I	CCNGG	5 cut(s)	70, 78, 138, 411, 622
StyI	CCWWGG	2 cut(s)	564, 606
TaaI	ACNGT	2 cut(s)	402, 555
TaiI	ACGT	1 cut(s)	302
TasI	AATT	7 cut(s)	41, 157, 186, 222, 272, 305, 452
TauI	GCSGC	2 cut(s)	180, 377
TfiI	GAWTC	1 cut(s)	589
Tru1I	TTAA	2 cut(s)	308, 615
Tru9I	TTAA	2 cut(s)	308, 615
TscAI	CASTG	3 cut(s)	391, 405, 558
TseFI	GTSAC	2 cut(s)	74, 389
Tsp45I	GTSAC	2 cut(s)	74, 389
TspDTI	ATGAA	7 cut(s)	36, 82, 103, 139, 465, 514, 602
TspRI	CASTG	3 cut(s)	391, 405, 558
Van91I	CCANNNNNTGG	1 cut(s)	386
VspI	ATTAAT	1 cut(s)	308
XapI	RAATTY	1 cut(s)	186
XceI	RCATGY	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.