Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012456

Physical Location & Seq

Genomic Coordinates Reverse (-)

3776976 .. 3779221

Gene Structure 2246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1031400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2166 bp

ATGGCTACTAGTGCGGTCCACTGGACTGTGAATTCCTCAGATACAAAGAGACCCATCTTCTTCTCTCCATCTTTTCGACAAATCGCACCCAAAAAATTCAACATTTCTTGCCGCTCCGCCAAGTCTCCTCCCAAATCTCCGCCGGATTTAGCCGAACCCGCCGCCGCCACCACCAAGAAGACGAAGAACAAAGACCCATCTCTATCTTTGTCTGAGCAACTCCGGCCTCTAAGCACAACCACCCTCTCCGACCCTCCTCCGCCAAAAGACCAATCCCAGTTGATATCCAAGCCCAAATCCATCTGGGTTAACCCGGCCAAGCCCAAACGCTCCGTGCTTTCTCTGCAGCGGCAGAAGCGGTCTCTCTACTCTTACAATCCTCAGGTGAGAGATCTGAGGGGGTTTGCCCACAAGCTCAACGACTGTGATGCCACTAAACTTGCCTTCTTGGCCGCCCTTGAAGAAATCCCGCACCCGCCCACCCGAGAAAATGCGCTTTTAATTCTTAACAGCTTGAAGCCATGGCAGAAAACCCACATGTTCTTCAACTGGGTCAAGTCCCAGAATTTGTTTCCCATGGAAACCATATTCTACAATGTCACTATGAAGTCTCTGAGGTTCGGGAGGCAGTTTCAGCTCATCGAAGAGCTCGCGGAGGAGATGATGAGGGACGACATTGAGCTCGATAACATTACGTATTCTACAATAATCACCTGTGCCAAGAGGTCCAAGCTTTTCGACAAGGCGGTGGAGTGGTTTGAGAGGATGTACAAGACCGGTTTGATGCCGGATGAGGTGACTTACTCTGCCATTTTAGATGTTTATGCTAAATTGGGAAAGGTTGAGGAGGTTCTTAGTTTGTATGAGAGGGGAAGAGCTAGTGGCTGGAAACCGGACCCGATTGCATTTGCGGTTTTGGGTAAGATGTTTGGGGAGGCTGGGGATTACGATGGTATTAGGTATGTCTTGCAAGAAATGGCTGCTCTTGGTGTGGAGCCTAATTTGGTTGTGTACAACACTTTGTTAGAGGCAATGGGGAAGGCCGGAAAGCCCGGTTTGGCGAGGAGCTTATTTGAAGAAATGGTGGAAGCGGGGCTAACCCCGAATGAGAAAACATTGACCGCCCTTGTTAAGATATATGGCAAGGCAAGGTGGGCTCGAGATGCTTTGGAATTGTGGGAGCGAATGAGGTCGAATAAGTGGCCTATGGACTTCATTTTGTATAACACATTGTTGAATATGTGTGCTGACCTTGGTTTGGAGGATGAAGCCAAGAAGCTTTTTGACGATATGAAGCAGTCGGAGCATTGTAGGCCGGACAGTTGGAGTTACACTGCAATGCTGAACATCTATGGGAGTGGTGGGAAGGTTGATGAGGCAATGAAATTGTTTGAGGAAATGTCGGAGTTGGGTATCGAGCTCAATGTCATGGGGTGCACTTGTTTGATTCAGGGTTTGGGGAAAGCTAAAAGATTCGGTGATATGGTTCGAGTCTTTGGCGTTGCGGTTGAAAAAGGGGTTAAACCAGATGATAGGCTTTGTGGGTGCTTACTCTCTGTCGTATCCTTGTGTGAAGAAACTGAGGATGAGGATAGGGTGCTTTCCTGTTTGCAGCAGGCTAATCCAAAGTTGGTGACTCTTGTCAAGGTGCTGCAAAATAAGAATATCCGGTTTGACACGATTAAAGATGAGTTCAGGGACGTTATTGGTAGCACCGCGGTTGAATCCCGGAGACCCTTCTGTAATTGCCTGATTGATATATGCCGAAACAAAAACAACCATGAGAGAGCTCATGAGCTGCTCTACTTGGGAACCCTATACGGCTTGTATCCGGGTCTACACAACAAGACTGCAAGGGAGTGGTGTTTGGATGTTAGGTCACTATCCATCGGTGCAGCTCACACTGCACTTGAAGAGTGGATGGGAACGCTCTACAAAATAGTTCAGCGTGAAGAGGCCTTGCCGGAGATGTTCTCCGCTCAAACGGGCAGCGGAACTCACAAATTCTCGCAAGGGCTGTCGCATTCCTTCGGTTCTCATTTGAAGAAATTGGCTGCACCATTTAGACAGAGTGAAGAGAAAGCTGGGTGTTTTGTGGCAACCAGGGAGGATTTAGTGTCATGGGCGCAGTCACAGGCTCCGTCTTCGGCCATCACAACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

722

Amino Acids

81.25

Weight (kDa)

8.3

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	217 - 276	4.7e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	235 - 277	5.3e-07	PPR repeat family
PPR_long	PF17177	282 - 381	5.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	322 - 382	1.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	330 - 362	4.1e-06	PPR repeat
PPR_2	PF13041	333 - 378	4.6e-11	PPR repeat family
PPR	PF01535	336 - 366	4.4e-06	PPR repeat
PPR_long	PF17177	386 - 540	3.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	406 - 449	1.5e-08	PPR repeat family
PPR_1	PF12854	436 - 468	1.5e-07	PPR repeat
PPR_2	PF13041	439 - 476	1.7e-07	PPR repeat family
PPR	PF01535	443 - 472	4.7e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46580
fragaria_vesca	FvH4_5g21640
malus_domestica	MD06G1031400.v1.1 MD16G1277300.v1.1
prunus_persica	Prupe.5G040700_v2.0.a1
pyrus_communis	pycom06g02620 pycom16g24660
rosa_chinensis	RchiOBHm_Chr7g0209101
rosa_laevigata	RLG00000003167
rosa_multiflora	Rmu_co8470613.1_g000001 Rmu_sc0000821.1_g000010 Rmu_sc0009521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249750
rosa_rugosa	Rorug07G0109100
rosa_samantha	Rh7AG243500 Rh7BG238600 Rh7CG258700 Rh7DG250500
rosa_wichuraiana	Rw7G020640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	114, 1979
AccI	GTMKAC	1 cut(s)	1837
AccII	CGCG	2 cut(s)	653, 1718
AcoI	YGGCCR	3 cut(s)	315, 450, 2148
AcsI	RAATTY	4 cut(s)	31, 95, 565, 2003
AfaI	GTAC	2 cut(s)	770, 1013
AfiI	CCNNNNNNNGG	1 cut(s)	1258
AflIII	ACRYGT	1 cut(s)	537
AgeI	ACCGGT	1 cut(s)	776
AhlI	ACTAGT	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	2102
Alw21I	GWGCWC	5 cut(s)	651, 684, 1422, 1439, 1792
Alw26I	GTCTC	5 cut(s)	43, 129, 366, 615, 1726
Alw44I	GTGCAC	1 cut(s)	1435
Ama87I	CYCGRG	2 cut(s)	483, 1158
AoxI	GGCC	8 cut(s)	224, 315, 450, 1041, 1202, 1313, 1956, 2148
ApaLI	GTGCAC	1 cut(s)	1435
ApeKI	GCWGC	8 cut(s)	346, 980, 1612, 1651, 1798, 1895, 1989, 2054
ApoI	RAATTY	4 cut(s)	31, 95, 565, 2003
AsiGI	ACCGGT	1 cut(s)	776
AspLEI	GCGC	2 cut(s)	496, 2128
AspS9I	GGNCC	3 cut(s)	16, 726, 895
AsuC2I	CCSGG	4 cut(s)	314, 1053, 1729, 1833
AsuHPI	GGTGA	5 cut(s)	397, 703, 808, 1490, 1645
AvaI	CYCGRG	2 cut(s)	483, 1158
AvaII	GGWCC	3 cut(s)	16, 726, 895
AxyI	CCTNAGG	1 cut(s)	381
BaeGI	GKGCMC	1 cut(s)	1439
BanII	GRGCYC	5 cut(s)	651, 684, 1159, 1422, 1792
BbsI	GAAGAC	2 cut(s)	185, 2136
Bbv12I	GWGCWC	5 cut(s)	651, 684, 1422, 1439, 1792
BbvI	GCAGC	8 cut(s)	358, 967, 1624, 1638, 1785, 1907, 2001, 2041
BccI	CCATC	8 cut(s)	62, 76, 205, 308, 944, 1895, 1915, 2159
BceAI	ACGGC	1 cut(s)	1837
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BciT130I	CCWGG	1 cut(s)	2104
BciVI	GTATCC	2 cut(s)	1573, 1839
BcnI	CCSGG	4 cut(s)	314, 1053, 1729, 1833
BcoDI	GTCTC	5 cut(s)	43, 129, 366, 615, 1726
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	2 cut(s)	9, 879
BfmI	CTRYAG	1 cut(s)	344
BfuI	GTATCC	2 cut(s)	1573, 1839
BglI	GCCNNNNNGGC	1 cut(s)	449
BglII	AGATCT	1 cut(s)	391
Bme1390I	CCNGG	5 cut(s)	314, 1053, 1729, 1833, 2104
Bme18I	GGWCC	3 cut(s)	16, 726, 895
BmeT110I	CYCGRG	2 cut(s)	483, 1158
BmgT120I	GGNCC	3 cut(s)	16, 726, 895
BmiI	GGNNCC	4 cut(s)	897, 996, 1813, 2139
BmrFI	CCNGG	5 cut(s)	314, 1053, 1729, 1833, 2104
BmrI	ACTGGG	2 cut(s)	271, 559
BmsI	GCATC	3 cut(s)	418, 774, 1153
BmuI	ACTGGG	2 cut(s)	271, 559
BoxI	GACNNNNGTC	1 cut(s)	1640
BpiI	GAAGAC	2 cut(s)	185, 2136
BplI	GAGNNNNNCTC	2 cut(s)	1958, 1990
BpuMI	CCSGG	4 cut(s)	314, 1053, 1729, 1833
BsaAI	YACGTR	1 cut(s)	696
BsaI	GGTCTC	3 cut(s)	43, 366, 1726
BsaJI	CCNNGG	5 cut(s)	521, 576, 1252, 1716, 2103
BsaWI	WCCGGW	3 cut(s)	776, 892, 1668
Bsc4I	CCNNNNNNNGG	1 cut(s)	1258
Bse118I	RCCGGY	1 cut(s)	776
Bse1I	ACTGG	3 cut(s)	26, 277, 554
Bse21I	CCTNAGG	1 cut(s)	381
Bse3DI	GCAATG	3 cut(s)	1038, 1344, 1386
BseBI	CCWGG	1 cut(s)	2104
BseDI	CCNNGG	5 cut(s)	521, 576, 1252, 1716, 2103
BseGI	GGATG	6 cut(s)	771, 796, 1270, 1591, 1876, 1926
BseLI	CCNNNNNNNGG	1 cut(s)	1258
BseMI	GCAATG	3 cut(s)	1038, 1344, 1386
BseMII	CTCAG	6 cut(s)	51, 204, 386, 395, 605, 1572
BseNI	ACTGG	3 cut(s)	26, 277, 554
BseRI	GAGGAG	5 cut(s)	117, 246, 671, 860, 1078
BseSI	GKGCMC	1 cut(s)	1439
BseXI	GCAGC	8 cut(s)	358, 967, 1624, 1638, 1785, 1907, 2001, 2041
BseYI	CCCAGC	2 cut(s)	938, 2084
BsgI	GTGCAG	3 cut(s)	1890, 1914, 2040
Bsh1236I	CGCG	2 cut(s)	653, 1718
BshFI	GGCC	8 cut(s)	226, 317, 452, 1043, 1204, 1315, 1958, 2150
BshTI	ACCGGT	1 cut(s)	776
BsiHKAI	GWGCWC	5 cut(s)	651, 684, 1422, 1439, 1792
BsiHKCI	CYCGRG	2 cut(s)	483, 1158
BslFI	GGGAC	3 cut(s)	544, 683, 1712
BslI	CCNNNNNNNGG	1 cut(s)	1258
BsmAI	GTCTC	5 cut(s)	43, 129, 366, 615, 1726
BsmFI	GGGAC	3 cut(s)	544, 683, 1712
BsmI	GAATGC	1 cut(s)	2023
BsnI	GGCC	8 cut(s)	226, 317, 452, 1043, 1204, 1315, 1958, 2150
Bso31I	GGTCTC	3 cut(s)	43, 366, 1726
BsoBI	CYCGRG	2 cut(s)	483, 1158
Bsp1286I	GDGCHC	6 cut(s)	651, 684, 1159, 1422, 1439, 1792
Bsp1407I	TGTACA	2 cut(s)	768, 1011
Bsp143I	GATC	1 cut(s)	391
Bsp19I	CCATGG	2 cut(s)	521, 576
BspANI	GGCC	8 cut(s)	226, 317, 452, 1043, 1204, 1315, 1958, 2150
BspCNI	CTCAG	6 cut(s)	50, 205, 387, 394, 606, 1573
BspFNI	CGCG	2 cut(s)	653, 1718
BspHI	TCATGA	1 cut(s)	1792
BspLI	GGNNCC	4 cut(s)	897, 996, 1813, 2139
BspMAI	CTGCAG	1 cut(s)	348
BspQI	GCTCTTC	2 cut(s)	639, 868
BspTNI	GGTCTC	3 cut(s)	43, 366, 1726
BsrBI	CCGCTC	2 cut(s)	114, 1979
BsrDI	GCAATG	3 cut(s)	1038, 1344, 1386
BsrFI	RCCGGY	1 cut(s)	776
BsrGI	TGTACA	2 cut(s)	768, 1011
BsrI	ACTGG	3 cut(s)	26, 277, 554
BssAI	RCCGGY	1 cut(s)	776
BssECI	CCNNGG	5 cut(s)	521, 576, 1252, 1716, 2103
BssMI	GATC	1 cut(s)	391
BssT1I	CCWWGG	3 cut(s)	521, 576, 1252
Bst2UI	CCWGG	1 cut(s)	2104
Bst4CI	ACNGT	3 cut(s)	28, 425, 1322
Bst6I	CTCTTC	5 cut(s)	639, 868, 1908, 1947, 2070
BstAUI	TGTACA	2 cut(s)	768, 1011
BstBAI	YACGTR	1 cut(s)	696
BstC8I	GCNNGC	2 cut(s)	651, 1617
BstDEI	CTNAG	8 cut(s)	37, 213, 230, 381, 395, 614, 854, 1581
BstDSI	CCRYGG	3 cut(s)	521, 576, 1716
BstF5I	GGATG	6 cut(s)	771, 796, 1270, 1591, 1876, 1926
BstFNI	CGCG	2 cut(s)	653, 1718
BstHHI	GCGC	2 cut(s)	496, 2128
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	5 cut(s)	43, 129, 366, 615, 1726
BstMBI	GATC	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	2104
BstNSI	RCATGY	1 cut(s)	541
BstPAI	GACNNNNGTC	1 cut(s)	1640
BstSCI	CCNGG	5 cut(s)	312, 1051, 1727, 1831, 2102
BstSFI	CTRYAG	1 cut(s)	344
BstSLI	GKGCMC	1 cut(s)	1439
BstSNI	TACGTA	1 cut(s)	696
BstUI	CGCG	2 cut(s)	653, 1718
BstV1I	GCAGC	8 cut(s)	358, 967, 1624, 1638, 1785, 1907, 2001, 2041
BstV2I	GAAGAC	2 cut(s)	185, 2136
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
Bsu36I	CCTNAGG	1 cut(s)	381
BsuI	GTATCC	2 cut(s)	1573, 1839
BsuRI	GGCC	8 cut(s)	226, 317, 452, 1043, 1204, 1315, 1958, 2150
BtgI	CCRYGG	3 cut(s)	521, 576, 1716
BtsCI	GGATG	6 cut(s)	771, 796, 1270, 1591, 1876, 1926
BtsI	GCAGTG	2 cut(s)	1332, 1902
BtsIMutI	CAGTG	3 cut(s)	19, 1332, 1902
Cac8I	GCNNGC	2 cut(s)	651, 1617
CciI	TCATGA	1 cut(s)	1792
CfoI	GCGC	2 cut(s)	496, 2128
Cfr10I	RCCGGY	1 cut(s)	776
Cfr13I	GGNCC	3 cut(s)	16, 726, 895
Cfr42I	CCGCGG	1 cut(s)	1719
Csp6I	GTAC	2 cut(s)	769, 1012
CspAI	ACCGGT	1 cut(s)	776
CspCI	CAANNNNNGTGG	2 cut(s)	421, 456
CviAII	CATG	7 cut(s)	522, 538, 577, 1429, 1781, 1793, 2121
CviQI	GTAC	2 cut(s)	769, 1012
DdeI	CTNAG	8 cut(s)	37, 213, 230, 381, 395, 614, 854, 1581
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
EaeI	YGGCCR	3 cut(s)	315, 450, 2148
Eam1104I	CTCTTC	5 cut(s)	639, 868, 1908, 1947, 2070
EarI	CTCTTC	5 cut(s)	639, 868, 1908, 1947, 2070
EciI	GGCGGA	3 cut(s)	106, 129, 249
Ecl136II	GAGCTC	4 cut(s)	649, 682, 1420, 1790
Eco105I	TACGTA	1 cut(s)	696
Eco130I	CCWWGG	3 cut(s)	521, 576, 1252
Eco147I	AGGCCT	1 cut(s)	1958
Eco24I	GRGCYC	5 cut(s)	651, 684, 1159, 1422, 1792
Eco31I	GGTCTC	3 cut(s)	43, 366, 1726
Eco32I	GATATC	1 cut(s)	285
Eco47I	GGWCC	3 cut(s)	16, 726, 895
Eco53kI	GAGCTC	4 cut(s)	649, 682, 1420, 1790
Eco81I	CCTNAGG	1 cut(s)	381
Eco88I	CYCGRG	2 cut(s)	483, 1158
EcoICRI	GAGCTC	4 cut(s)	649, 682, 1420, 1790
EcoRI	GAATTC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	2102
EcoRV	GATATC	1 cut(s)	285
EcoT14I	CCWWGG	3 cut(s)	521, 576, 1252
EcoT38I	GRGCYC	5 cut(s)	651, 684, 1159, 1422, 1792
ErhI	CCWWGG	3 cut(s)	521, 576, 1252
FaeI	CATG	7 cut(s)	525, 541, 580, 1432, 1784, 1796, 2124
FaqI	GGGAC	3 cut(s)	544, 683, 1712
FatI	CATG	7 cut(s)	521, 537, 576, 1428, 1780, 1792, 2120
FauI	CCCGC	4 cut(s)	166, 477, 483, 1084
FblI	GTMKAC	1 cut(s)	1837
FokI	GGATG	6 cut(s)	778, 803, 1277, 1598, 1883, 1933
FriOI	GRGCYC	5 cut(s)	651, 684, 1159, 1422, 1792
FspBI	CTAG	2 cut(s)	9, 879
GlaI	GCGC	2 cut(s)	495, 2127
GsaI	CCCAGC	2 cut(s)	942, 2088
HaeIII	GGCC	8 cut(s)	226, 317, 452, 1043, 1204, 1315, 1958, 2150
HhaI	GCGC	2 cut(s)	496, 2128
Hin1II	CATG	7 cut(s)	525, 541, 580, 1432, 1784, 1796, 2124
Hin6I	GCGC	2 cut(s)	494, 2126
HinP1I	GCGC	2 cut(s)	494, 2126
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	2 cut(s)	731, 1277
HinfI	GANTC	5 cut(s)	1447, 1473, 1491, 1636, 1724
HpaI	GTTAAC	1 cut(s)	310
HphI	GGTGA	5 cut(s)	397, 703, 808, 1490, 1645
Hpy166II	GTNNAC	5 cut(s)	19, 310, 1012, 1437, 1838
Hpy188I	TCNGA	7 cut(s)	40, 214, 250, 396, 615, 1303, 1405
Hpy188III	TCNNGA	3 cut(s)	622, 1160, 1793
Hpy8I	GTNNAC	5 cut(s)	19, 310, 1012, 1437, 1838
HpyAV	CCTTC	5 cut(s)	454, 1033, 1360, 1747, 2038
HpyCH4III	ACNGT	3 cut(s)	28, 425, 1322
HpyCH4IV	ACGT	2 cut(s)	695, 1701
HpyF3I	CTNAG	8 cut(s)	37, 213, 230, 381, 395, 614, 854, 1581
HpySE526I	ACGT	2 cut(s)	695, 1701
Hsp92II	CATG	7 cut(s)	525, 541, 580, 1432, 1784, 1796, 2124
HspAI	GCGC	2 cut(s)	494, 2126
KspAI	GTTAAC	1 cut(s)	310
KspI	CCGCGG	1 cut(s)	1719
Kzo9I	GATC	1 cut(s)	391
LguI	GCTCTTC	2 cut(s)	639, 868
LmnI	GCTCC	7 cut(s)	119, 335, 994, 1065, 1180, 1303, 2143
Lsp1109I	GCAGC	8 cut(s)	358, 967, 1624, 1638, 1785, 1907, 2001, 2041
LweI	GCATC	3 cut(s)	418, 774, 1153
MaeI	CTAG	2 cut(s)	9, 879
MaeII	ACGT	2 cut(s)	695, 1701
MaeIII	GTNAC	6 cut(s)	598, 796, 1328, 1633, 1878, 2130
MalI	GATC	1 cut(s)	393
MbiI	CCGCTC	2 cut(s)	114, 1979
MboI	GATC	1 cut(s)	391
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	6 cut(s)	651, 684, 1159, 1422, 1439, 1792
MlyI	GAGTC	2 cut(s)	1500, 1630
MmeI	TCCRAC	4 cut(s)	273, 1281, 1304, 1383
MseI	TTAA	7 cut(s)	309, 500, 507, 1131, 1521, 1683, 2164
MslI	CAYNNNNRTG	1 cut(s)	1337
MspA1I	CMGCKG	3 cut(s)	349, 1718, 1992
MspR9I	CCNGG	5 cut(s)	314, 1053, 1729, 1833, 2104
Mva1269I	GAATGC	1 cut(s)	2023
MvaI	CCWGG	1 cut(s)	2104
MvnI	CGCG	2 cut(s)	653, 1718
NciI	CCSGG	4 cut(s)	314, 1053, 1729, 1833
NcoI	CCATGG	2 cut(s)	521, 576
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	7 cut(s)	525, 541, 580, 1432, 1784, 1796, 2124
NlaIV	GGNNCC	4 cut(s)	897, 996, 1813, 2139
NmuCI	GTSAC	5 cut(s)	598, 796, 1633, 1878, 2130
NspI	RCATGY	1 cut(s)	541
PaeR7I	CTCGAG	1 cut(s)	1158
PagI	TCATGA	1 cut(s)	1792
PceI	AGGCCT	1 cut(s)	1958
PciI	ACATGT	1 cut(s)	537
PciSI	GCTCTTC	2 cut(s)	639, 868
PctI	GAATGC	1 cut(s)	2023
PfeI	GAWTC	3 cut(s)	1447, 1473, 1724
PfoI	TCCNGGA	1 cut(s)	1727
PinAI	ACCGGT	1 cut(s)	776
PleI	GAGTC	2 cut(s)	1499, 1630
PpsI	GAGTC	2 cut(s)	1499, 1630
Ppu21I	YACGTR	1 cut(s)	696
PscI	ACATGT	1 cut(s)	537
PshAI	GACNNNNGTC	1 cut(s)	1640
Psp124BI	GAGCTC	4 cut(s)	651, 684, 1422, 1792
Psp6I	CCWGG	1 cut(s)	2102
PspFI	CCCAGC	2 cut(s)	938, 2084
PspGI	CCWGG	1 cut(s)	2102
PspN4I	GGNNCC	4 cut(s)	897, 996, 1813, 2139
PspPI	GGNCC	3 cut(s)	16, 726, 895
PstI	CTGCAG	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	2 cut(s)	770, 1013
RsaNI	GTAC	2 cut(s)	769, 1012
RseI	CAYNNNNRTG	1 cut(s)	1337
SacI	GAGCTC	4 cut(s)	651, 684, 1422, 1792
SacII	CCGCGG	1 cut(s)	1719
SapI	GCTCTTC	2 cut(s)	639, 868
SaqAI	TTAA	7 cut(s)	309, 500, 507, 1131, 1521, 1683, 2164
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	3 cut(s)	16, 726, 895
SchI	GAGTC	2 cut(s)	1500, 1630
ScrFI	CCNGG	5 cut(s)	314, 1053, 1729, 1833, 2104
SduI	GDGCHC	6 cut(s)	651, 684, 1159, 1422, 1439, 1792
SfaNI	GCATC	3 cut(s)	418, 774, 1153
SfcI	CTRYAG	1 cut(s)	344
Sfr274I	CTCGAG	1 cut(s)	1158
Sfr303I	CCGCGG	1 cut(s)	1719
SgrBI	CCGCGG	1 cut(s)	1719
SinI	GGWCC	3 cut(s)	16, 726, 895
SlaI	CTCGAG	1 cut(s)	1158
SmiMI	CAYNNNNRTG	1 cut(s)	1337
SmlI	CTYRAG	1 cut(s)	1158
SmoI	CTYRAG	1 cut(s)	1158
SnaBI	TACGTA	1 cut(s)	696
SpeI	ACTAGT	1 cut(s)	8
SseBI	AGGCCT	1 cut(s)	1958
SspMI	CTAG	2 cut(s)	9, 879
SstI	GAGCTC	4 cut(s)	651, 684, 1422, 1792
StuI	AGGCCT	1 cut(s)	1958
StyD4I	CCNGG	5 cut(s)	312, 1051, 1727, 1831, 2102
StyI	CCWWGG	3 cut(s)	521, 576, 1252
TaaI	ACNGT	3 cut(s)	28, 425, 1322
TaiI	ACGT	2 cut(s)	698, 1704
TaqI	TCGA	8 cut(s)	76, 642, 684, 738, 1159, 1193, 1416, 1489
TatI	WGTACW	2 cut(s)	768, 1011
TauI	GCSGC	5 cut(s)	114, 164, 167, 352, 455
TfiI	GAWTC	3 cut(s)	1447, 1473, 1724
Tru1I	TTAA	7 cut(s)	309, 500, 507, 1131, 1521, 1683, 2164
Tru9I	TTAA	7 cut(s)	309, 500, 507, 1131, 1521, 1683, 2164
TscAI	CASTG	3 cut(s)	26, 1339, 1909
TseFI	GTSAC	5 cut(s)	598, 796, 1633, 1878, 2130
TseI	GCWGC	8 cut(s)	346, 980, 1612, 1651, 1798, 1895, 1989, 2054
Tsp45I	GTSAC	5 cut(s)	598, 796, 1633, 1878, 2130
TspDTI	ATGAA	5 cut(s)	620, 1204, 1281, 1307, 1397
TspGWI	ACGGA	2 cut(s)	322, 2130
TspRI	CASTG	3 cut(s)	26, 1339, 1909
VneI	GTGCAC	1 cut(s)	1435
VpaK11BI	GGWCC	3 cut(s)	16, 726, 895
XapI	RAATTY	4 cut(s)	31, 95, 565, 2003
XceI	RCATGY	1 cut(s)	541
XhoI	CTCGAG	1 cut(s)	1158
XmiI	GTMKAC	1 cut(s)	1837
XspI	CTAG	2 cut(s)	9, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.