Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0012456

Physical Location & Seq

Genomic Coordinates Reverse (-)

23955517 .. 23981962

Gene Structure 26446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG243500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1890 bp

ATGTTACCTAAGAAGAAGAACAAGAGAGGCAAGGGCGTCCGGGAGGGTGAGGCGTCGGCGCCGAAGATTGTACCTCAGGGCCGGCGACGTGGGGAGGGAGAGAGTAAAAGCGGGGATGTCAGAGATCTCAGGCTCTTTGCCCAGAAGCTCAATGACTGTGACTCCTCTCAAGAAGCATTCTTGGCTGCTCTAGAAGAAATCCCACACCCACCCACCAGAGAAAATGCCCTTTTGATTCTCAACAGCTTGAAGCCATGGCAGAAAACCCACATGTTCTTCAACTGGGTCAAGTCCCAGAACCTGTTTCCAATGGAGACCATCTTCTACAATGTCACCATGAAGTCCATGAGGTTTGGGAGGCAGTTTCAGCTCATTGAGGAGCTTGCTGAGGAGATGATAGGCAATGGGGTTGCGCTTGACAACATTACTTACTCCACTATAATCACTTGTGCCAAAAGGTCCAAGCTTTTCGACAAGGCGGTGGAGTGGTTTGAGAGGATGTACAAGACTGGTTTGATGCCTGATGAGGTGACTTACTCTGCTATTTTAGATGTTTATGCCAAATTGGGCAAGGTTGAGGAGGTGCTTAGTTTATATGAGAGAGGGAGGGCTAGTGGGTGGACACCTGACCCTATTGCATTTTCTGTGTTGGGTAAGATGTTTGGTGAGGCTGGGGACTATGATGGTATTAGGTATGTCTTGCAGGAAATGGCTTCTATTGGTGTGAAGCCTAATTTGGTCGTGTACAATACGTTGTTAGAGGCAATGGGGAAGGCTGGAAAGCCTGGTTTAGCTAGGAGTTTGTTCGAAGAAATGGTTGCATCCGGGCTGAAACCGAATGAGAAAACATTGACTGCGCTTGTTAAGATCTATGGCAAGGCGAGGTGGGCTAGAGACGCGTTGGAATTGTGGGAGCGGATGAGGTCGAATCAGTGGCCGATGGACTTCATTTTGTACAACACATTGTTGAATATGTGTGCTGACCTTGGCTTGGAGGATGAGGCTAAGAGGCTTTTCGAGGATATGAAGCAGTCAGAGCACTGTAGGCCGGATAGTTATAGTTACACGGCAATGTTGAACATCTTTGGGAGTGGTGGGAATGCTGATGAGGCCATGGAGTTGTTTGAAGAAATGTCCAAGAAGGGTGTGCACCTCAATGTCATGGGTTGCACTTGTTTGATACAATGCTTGGGGAGAGCTAAAAGATTTGGTGATATGGTTCGAGTCTTCAATGTTGCAGTTGAAAGAGGGGTTAAACCAGATGATAGGCTCTGTGGGTGTTTACTGTCTGTTGTGTCGTTGTGTGAAAAAACTGAGGATGAGGATATGGTCTTTTCATGCTTGCAGCAGGCTAATCCGAAGTTGGTTACCCTCGTAAAAGTGCTGCAAGATGAGAAAGTAGGGTTTGAGGCAATTAAAGACGAATTTAGGGATGTTATTGGTAGCACTGCAGTTGAATCCAGAAGACCCTTCTGCAATTGCTTGATTGATATATGCAGAAACAAAAATAACCACGAGAGAGCTCATGAGCTGCTCTATCTAGGAACCCTATATGGGTTGTATCCGGGTTTACACAACAAGACAGCGAATGAGTGGTGTTTAGATGTTAGGTCACTATCCATTGGTGCTGCTCACACTGCACTTGAAGAGTGGATGGGAACTCTATACAAAATTGTTCAGCGTGAAGAGGCTCTGCCGAAGTTGTTTTCTGCTCAAACCGGTGCTGGAACTCACAAATTCTCTCAAGGACTGGCCCATTCATTTGGTTCTCATGTGAAGAAGTTGGCTGCACCATTTCGGCAGAGTGAAGAGAAAGCTGGTTGTTTTGTGGCAACTCGGGAGGATTTAGTGTCGTGGGTGCGGTCACAGGCACAATCAATCACCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

629

Amino Acids

70.82

Weight (kDa)

7.13

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	128 - 187	1.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	146 - 188	4.4e-07	PPR repeat family
PPR_long	PF17177	193 - 291	2e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	241 - 273	3e-06	PPR repeat
PPR_2	PF13041	244 - 289	2.8e-11	PPR repeat family
PPR	PF01535	247 - 277	9.4e-06	PPR repeat
PPR_long	PF17177	297 - 452	1.4e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	317 - 360	2.8e-09	PPR repeat family
PPR_1	PF12854	347 - 379	1.1e-06	PPR repeat
PPR_2	PF13041	350 - 387	4.4e-07	PPR repeat family
PPR	PF01535	353 - 383	2.3e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46580
fragaria_vesca	FvH4_5g21640
malus_domestica	MD06G1031400.v1.1 MD16G1277300.v1.1
prunus_persica	Prupe.5G040700_v2.0.a1
pyrus_communis	pycom06g02620 pycom16g24660
rosa_chinensis	RchiOBHm_Chr7g0209101
rosa_laevigata	RLG00000003167
rosa_multiflora	Rmu_co8470613.1_g000001 Rmu_sc0000821.1_g000010 Rmu_sc0009521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249750
rosa_rugosa	Rorug07G0109100
rosa_samantha	Rh7AG243500 Rh7BG238600 Rh7CG258700 Rh7DG250500
rosa_wichuraiana	Rw7G020640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	58
AccBSI	CCGCTC	1 cut(s)	916
AccII	CGCG	1 cut(s)	899
AciI	CCGC	5 cut(s)	111, 479, 916, 1861, 1884
AcoI	YGGCCR	1 cut(s)	935
AcsI	RAATTY	2 cut(s)	1424, 1736
AcyI	GRCGYC	3 cut(s)	36, 53, 59
AfaI	GTAC	4 cut(s)	72, 503, 746, 956
AfiI	CCNNNNNNNGG	2 cut(s)	991, 1554
AflIII	ACRYGT	2 cut(s)	270, 897
AgeI	ACCGGT	1 cut(s)	1718
AgsI	TTSAA	9 cut(s)	250, 280, 970, 1078, 1127, 1231, 1244, 1457, 1646
AjiI	CACGTC	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	784
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
Alw21I	GWGCWC	3 cut(s)	1041, 1152, 1525
Alw26I	GTCTC	2 cut(s)	308, 888
Alw44I	GTGCAC	1 cut(s)	1148
AlwNI	CAGNNNCTG	1 cut(s)	301
Ama87I	CYCGRG	1 cut(s)	1836
AoxI	GGCC	5 cut(s)	79, 935, 1046, 1110, 1752
ApaLI	GTGCAC	1 cut(s)	1148
ApeKI	GCWGC	6 cut(s)	185, 1345, 1384, 1531, 1628, 1787
ApoI	RAATTY	2 cut(s)	1424, 1736
AsiGI	ACCGGT	1 cut(s)	1718
AspLEI	GCGC	3 cut(s)	61, 415, 859
AspS9I	GGNCC	3 cut(s)	79, 459, 1753
AsuC2I	CCSGG	3 cut(s)	41, 826, 1566
AsuHPI	GGTGA	6 cut(s)	59, 325, 541, 677, 1223, 1873
AsuII	TTCGAA	1 cut(s)	807
AvaI	CYCGRG	1 cut(s)	1836
AvaII	GGWCC	1 cut(s)	459
AxyI	CCTNAGG	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	1152
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	1525
BauI	CACGAG	1 cut(s)	1514
BbsI	GAAGAC	2 cut(s)	1219, 1471
Bbv12I	GWGCWC	3 cut(s)	1041, 1152, 1525
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	6 cut(s)	172, 1357, 1371, 1518, 1615, 1774
BccI	CCATC	4 cut(s)	326, 677, 934, 1648
BceAI	ACGGC	1 cut(s)	1083
BciT130I	CCWGG	1 cut(s)	786
BciVI	GTATCC	1 cut(s)	1572
BcnI	CCSGG	3 cut(s)	41, 826, 1566
BcoDI	GTCTC	2 cut(s)	308, 888
BfaI	CTAG	5 cut(s)	191, 612, 795, 891, 1541
BfmI	CTRYAG	2 cut(s)	1042, 1449
BfoI	RGCGCY	1 cut(s)	62
BfuI	GTATCC	1 cut(s)	1572
BglII	AGATCT	2 cut(s)	124, 867
BisI	GCNGC	6 cut(s)	186, 1346, 1385, 1532, 1629, 1788
BlsI	GCNGC	6 cut(s)	187, 1347, 1386, 1533, 1630, 1789
Bme1390I	CCNGG	4 cut(s)	41, 786, 826, 1566
Bme18I	GGWCC	1 cut(s)	459
BmeT110I	CYCGRG	1 cut(s)	1836
BmgBI	CACGTC	1 cut(s)	89
BmgT120I	GGNCC	3 cut(s)	79, 459, 1753
BmiI	GGNNCC	2 cut(s)	60, 1546
BmrFI	CCNGG	4 cut(s)	41, 786, 826, 1566
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	507, 830
BmuI	ACTGGG	1 cut(s)	292
BpiI	GAAGAC	2 cut(s)	1219, 1471
Bpu10I	CCTNAGC	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	807
BpuEI	CTTGAG	2 cut(s)	153, 1728
BpuMI	CCSGG	3 cut(s)	41, 826, 1566
BsaHI	GRCGYC	3 cut(s)	36, 53, 59
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	3 cut(s)	254, 985, 1113
BsaWI	WCCGGW	1 cut(s)	1718
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 598, 628
Bsc4I	CCNNNNNNNGG	2 cut(s)	991, 1554
Bse118I	RCCGGY	2 cut(s)	81, 1718
Bse1I	ACTGG	3 cut(s)	287, 514, 1755
Bse21I	CCTNAGG	1 cut(s)	75
Bse3DI	GCAATG	3 cut(s)	409, 771, 1077
BseBI	CCWGG	1 cut(s)	786
BseDI	CCNNGG	3 cut(s)	254, 985, 1113
BseGI	GGATG	8 cut(s)	121, 504, 821, 924, 1003, 1324, 1438, 1659
BseLI	CCNNNNNNNGG	2 cut(s)	991, 1554
BseMI	GCAATG	3 cut(s)	409, 771, 1077
BseMII	CTCAG	4 cut(s)	89, 142, 378, 1305
BseNI	ACTGG	3 cut(s)	287, 514, 1755
BseRI	GAGGAG	4 cut(s)	154, 392, 404, 593
BseSI	GKGCMC	1 cut(s)	1152
BseXI	GCAGC	6 cut(s)	172, 1357, 1371, 1518, 1615, 1774
BseYI	CCCAGC	1 cut(s)	671
BsgI	GTGCAG	2 cut(s)	1623, 1773
Bsh1236I	CGCG	1 cut(s)	899
BshFI	GGCC	5 cut(s)	81, 937, 1048, 1112, 1754
BshNI	GGYRCC	1 cut(s)	58
BshTI	ACCGGT	1 cut(s)	1718
BsiHKAI	GWGCWC	3 cut(s)	1041, 1152, 1525
BsiHKCI	CYCGRG	1 cut(s)	1836
BsiSI	CCGG	6 cut(s)	40, 82, 825, 1049, 1565, 1719
BslFI	GGGAC	2 cut(s)	277, 689
BslI	CCNNNNNNNGG	2 cut(s)	991, 1554
BsmAI	GTCTC	2 cut(s)	308, 888
BsmBI	CGTCTC	1 cut(s)	888
BsmFI	GGGAC	2 cut(s)	277, 689
BsmI	GAATGC	2 cut(s)	176, 1105
BsnI	GGCC	5 cut(s)	81, 937, 1048, 1112, 1754
Bso31I	GGTCTC	1 cut(s)	308
BsoBI	CYCGRG	1 cut(s)	1836
Bsp119I	TTCGAA	1 cut(s)	807
Bsp1286I	GDGCHC	3 cut(s)	1041, 1152, 1525
Bsp1407I	TGTACA	3 cut(s)	501, 744, 954
Bsp143I	GATC	2 cut(s)	124, 867
Bsp19I	CCATGG	2 cut(s)	254, 1113
BspACI	CCGC	5 cut(s)	111, 479, 916, 1861, 1884
BspANI	GGCC	5 cut(s)	81, 937, 1048, 1112, 1754
BspCNI	CTCAG	4 cut(s)	88, 141, 379, 1306
BspFNI	CGCG	1 cut(s)	899
BspHI	TCATGA	1 cut(s)	1525
BspLI	GGNNCC	2 cut(s)	60, 1546
BspMAI	CTGCAG	1 cut(s)	1453
BspT104I	TTCGAA	1 cut(s)	807
BspT107I	GGYRCC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	916
BsrDI	GCAATG	3 cut(s)	409, 771, 1077
BsrFI	RCCGGY	2 cut(s)	81, 1718
BsrGI	TGTACA	3 cut(s)	501, 744, 954
BsrI	ACTGG	3 cut(s)	287, 514, 1755
BssAI	RCCGGY	2 cut(s)	81, 1718
BssECI	CCNNGG	3 cut(s)	254, 985, 1113
BssMI	GATC	2 cut(s)	124, 867
BssNI	GRCGYC	3 cut(s)	36, 53, 59
BssSI	CACGAG	1 cut(s)	1514
BssT1I	CCWWGG	3 cut(s)	254, 985, 1113
Bst2BI	CACGAG	1 cut(s)	1514
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	3 cut(s)	158, 1043, 1287
Bst6I	CTCTTC	3 cut(s)	1641, 1680, 1803
BstACI	GRCGYC	3 cut(s)	36, 53, 59
BstAUI	TGTACA	3 cut(s)	501, 744, 954
BstBI	TTCGAA	1 cut(s)	807
BstC8I	GCNNGC	4 cut(s)	83, 384, 1343, 1350
BstDEI	CTNAG	7 cut(s)	9, 75, 128, 387, 587, 1005, 1314
BstDSI	CCRYGG	2 cut(s)	254, 1113
BstEII	GGTNACC	1 cut(s)	1366
BstF5I	GGATG	8 cut(s)	121, 504, 821, 924, 1003, 1324, 1438, 1659
BstFNI	CGCG	1 cut(s)	899
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	3 cut(s)	61, 415, 859
BstKTI	GATC	2 cut(s)	127, 870
BstMAI	GTCTC	2 cut(s)	308, 888
BstMBI	GATC	2 cut(s)	124, 867
BstMWI	GCNNNNNNNGC	8 cut(s)	182, 367, 887, 896, 1036, 1045, 1109, 1637
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	1 cut(s)	274
BstPI	GGTNACC	1 cut(s)	1366
BstSCI	CCNGG	4 cut(s)	39, 784, 824, 1564
BstSFI	CTRYAG	2 cut(s)	1042, 1449
BstSLI	GKGCMC	1 cut(s)	1152
BstUI	CGCG	1 cut(s)	899
BstV1I	GCAGC	6 cut(s)	172, 1357, 1371, 1518, 1615, 1774
BstV2I	GAAGAC	2 cut(s)	1219, 1471
BstX2I	RGATCY	2 cut(s)	124, 867
BstXI	CCANNNNNNTGG	1 cut(s)	1763
BstYI	RGATCY	2 cut(s)	124, 867
Bsu36I	CCTNAGG	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	1572
BsuRI	GGCC	5 cut(s)	81, 937, 1048, 1112, 1754
BtgI	CCRYGG	2 cut(s)	254, 1113
BtrI	CACGTC	1 cut(s)	89
BtsCI	GGATG	8 cut(s)	121, 504, 821, 924, 1003, 1324, 1438, 1659
BtsI	GCAGTG	2 cut(s)	1446, 1635
BtsIMutI	CAGTG	4 cut(s)	938, 1039, 1446, 1635
Cac8I	GCNNGC	4 cut(s)	83, 384, 1343, 1350
CaiI	CAGNNNCTG	1 cut(s)	301
CciI	TCATGA	1 cut(s)	1525
CfoI	GCGC	3 cut(s)	61, 415, 859
Cfr10I	RCCGGY	2 cut(s)	81, 1718
Cfr13I	GGNCC	3 cut(s)	79, 459, 1753
CseI	GACGC	3 cut(s)	25, 42, 905
Csp6I	GTAC	4 cut(s)	71, 502, 745, 955
CspAI	ACCGGT	1 cut(s)	1718
CviAII	CATG	9 cut(s)	255, 271, 337, 346, 1114, 1162, 1338, 1526, 1772
CviQI	GTAC	4 cut(s)	71, 502, 745, 955
DdeI	CTNAG	7 cut(s)	9, 75, 128, 387, 587, 1005, 1314
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	2 cut(s)	126, 869
DpnII	GATC	2 cut(s)	124, 867
EaeI	YGGCCR	1 cut(s)	935
Eam1104I	CTCTTC	3 cut(s)	1641, 1680, 1803
EarI	CTCTTC	3 cut(s)	1641, 1680, 1803
Ecl136II	GAGCTC	1 cut(s)	1523
Eco130I	CCWWGG	3 cut(s)	254, 985, 1113
Eco24I	GRGCYC	1 cut(s)	1525
Eco31I	GGTCTC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	459
Eco53kI	GAGCTC	1 cut(s)	1523
Eco81I	CCTNAGG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	1836
Eco91I	GGTNACC	1 cut(s)	1366
EcoICRI	GAGCTC	1 cut(s)	1523
EcoO65I	GGTNACC	1 cut(s)	1366
EcoRII	CCWGG	1 cut(s)	784
EcoT14I	CCWWGG	3 cut(s)	254, 985, 1113
EcoT38I	GRGCYC	1 cut(s)	1525
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
ErhI	CCWWGG	3 cut(s)	254, 985, 1113
Esp3I	CGTCTC	1 cut(s)	888
FaeI	CATG	9 cut(s)	258, 274, 340, 349, 1117, 1165, 1341, 1529, 1775
FaqI	GGGAC	2 cut(s)	277, 689
FatI	CATG	9 cut(s)	254, 270, 336, 345, 1113, 1161, 1337, 1525, 1771
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	6 cut(s)	186, 1346, 1385, 1532, 1629, 1788
FokI	GGATG	8 cut(s)	128, 511, 808, 931, 1010, 1331, 1445, 1666
FriOI	GRGCYC	1 cut(s)	1525
Fsp4HI	GCNGC	6 cut(s)	186, 1346, 1385, 1532, 1629, 1788
FspBI	CTAG	5 cut(s)	191, 612, 795, 891, 1541
GlaI	GCGC	3 cut(s)	60, 414, 858
GluI	GCNGC	6 cut(s)	186, 1346, 1385, 1532, 1629, 1788
GsaI	CCCAGC	1 cut(s)	675
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	5 cut(s)	81, 937, 1048, 1112, 1754
HapII	CCGG	6 cut(s)	40, 82, 825, 1049, 1565, 1719
HgaI	GACGC	3 cut(s)	25, 42, 905
HhaI	GCGC	3 cut(s)	61, 415, 859
Hin1I	GRCGYC	3 cut(s)	36, 53, 59
Hin1II	CATG	9 cut(s)	258, 274, 340, 349, 1117, 1165, 1341, 1529, 1775
Hin6I	GCGC	3 cut(s)	59, 413, 857
HinP1I	GCGC	3 cut(s)	59, 413, 857
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	5 cut(s)	161, 235, 928, 1224, 1457
HpaII	CCGG	6 cut(s)	40, 82, 825, 1049, 1565, 1719
HphI	GGTGA	6 cut(s)	59, 325, 541, 677, 1223, 1873
Hpy166II	GTNNAC	5 cut(s)	621, 745, 1150, 1283, 1571
Hpy188I	TCNGA	3 cut(s)	122, 1036, 1359
Hpy188III	TCNNGA	5 cut(s)	170, 191, 1461, 1526, 1838
Hpy8I	GTNNAC	5 cut(s)	621, 745, 1150, 1283, 1571
Hpy99I	CGWCG	2 cut(s)	58, 90
HpyAV	CCTTC	3 cut(s)	766, 1135, 1480
HpyCH4III	ACNGT	3 cut(s)	158, 1043, 1287
HpyCH4IV	ACGT	2 cut(s)	88, 752
HpyF10VI	GCNNNNNNNGC	8 cut(s)	182, 367, 887, 896, 1036, 1045, 1109, 1637
HpyF3I	CTNAG	7 cut(s)	9, 75, 128, 387, 587, 1005, 1314
HpySE526I	ACGT	2 cut(s)	88, 752
Hsp92I	GRCGYC	3 cut(s)	36, 53, 59
Hsp92II	CATG	9 cut(s)	258, 274, 340, 349, 1117, 1165, 1341, 1529, 1775
HspAI	GCGC	3 cut(s)	59, 413, 857
KasI	GGCGCC	1 cut(s)	58
KroI	GCCGGC	1 cut(s)	81
KroNI	GCCGGC	1 cut(s)	83
Kzo9I	GATC	2 cut(s)	124, 867
LmnI	GCTCC	2 cut(s)	379, 913
Lsp1109I	GCAGC	6 cut(s)	172, 1357, 1371, 1518, 1615, 1774
LweI	GCATC	2 cut(s)	507, 830
MaeI	CTAG	5 cut(s)	191, 612, 795, 891, 1541
MaeII	ACGT	2 cut(s)	88, 752
MaeIII	GTNAC	8 cut(s)	3, 158, 331, 529, 1061, 1366, 1611, 1863
MalI	GATC	2 cut(s)	126, 869
MbiI	CCGCTC	1 cut(s)	916
MboI	GATC	2 cut(s)	124, 867
MfeI	CAATTG	1 cut(s)	1477
MflI	RGATCY	2 cut(s)	124, 867
MhlI	GDGCHC	3 cut(s)	1041, 1152, 1525
MluCI	AATT	8 cut(s)	563, 733, 905, 1413, 1424, 1477, 1671, 1736
MluI	ACGCGT	1 cut(s)	897
Mly113I	GGCGCC	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	155, 1233
MmeI	TCCRAC	1 cut(s)	882
MroNI	GCCGGC	1 cut(s)	81
MseI	TTAA	4 cut(s)	864, 1254, 1416, 1888
MslI	CAYNNNNRTG	2 cut(s)	1070, 1155
MspI	CCGG	6 cut(s)	40, 82, 825, 1049, 1565, 1719
MspR9I	CCNGG	4 cut(s)	41, 786, 826, 1566
MunI	CAATTG	1 cut(s)	1477
Mva1269I	GAATGC	2 cut(s)	176, 1105
MvaI	CCWGG	1 cut(s)	786
MvnI	CGCG	1 cut(s)	899
MwoI	GCNNNNNNNGC	8 cut(s)	182, 367, 887, 896, 1036, 1045, 1109, 1637
NaeI	GCCGGC	1 cut(s)	83
NarI	GGCGCC	1 cut(s)	59
NciI	CCSGG	3 cut(s)	41, 826, 1566
NcoI	CCATGG	2 cut(s)	254, 1113
NdeII	GATC	2 cut(s)	124, 867
NgoMIV	GCCGGC	1 cut(s)	81
NlaIII	CATG	9 cut(s)	258, 274, 340, 349, 1117, 1165, 1341, 1529, 1775
NlaIV	GGNNCC	2 cut(s)	60, 1546
NmuCI	GTSAC	5 cut(s)	158, 331, 529, 1611, 1863
NspI	RCATGY	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	807
PagI	TCATGA	1 cut(s)	1525
PciI	ACATGT	1 cut(s)	270
PctI	GAATGC	2 cut(s)	176, 1105
PdiI	GCCGGC	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	235, 928, 1457
PfoI	TCCNGGA	1 cut(s)	39
PinAI	ACCGGT	1 cut(s)	1718
PkrI	GCNGC	6 cut(s)	187, 1347, 1386, 1533, 1630, 1789
PleI	GAGTC	2 cut(s)	155, 1232
PluTI	GGCGCC	1 cut(s)	62
PpsI	GAGTC	2 cut(s)	155, 1232
PscI	ACATGT	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	1525
Psp6I	CCWGG	1 cut(s)	784
PspEI	GGTNACC	1 cut(s)	1366
PspFI	CCCAGC	1 cut(s)	671
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	2 cut(s)	60, 1546
PspPI	GGNCC	3 cut(s)	79, 459, 1753
PstI	CTGCAG	1 cut(s)	1453
PstNI	CAGNNNCTG	1 cut(s)	301
PsuI	RGATCY	2 cut(s)	124, 867
RsaI	GTAC	4 cut(s)	72, 503, 746, 956
RsaNI	GTAC	4 cut(s)	71, 502, 745, 955
RseI	CAYNNNNRTG	2 cut(s)	1070, 1155
SacI	GAGCTC	1 cut(s)	1525
SaqAI	TTAA	4 cut(s)	864, 1254, 1416, 1888
SatI	GCNGC	6 cut(s)	186, 1346, 1385, 1532, 1629, 1788
Sau3AI	GATC	2 cut(s)	124, 867
Sau96I	GGNCC	3 cut(s)	79, 459, 1753
SchI	GAGTC	2 cut(s)	155, 1233
ScrFI	CCNGG	4 cut(s)	41, 786, 826, 1566
SduI	GDGCHC	3 cut(s)	1041, 1152, 1525
SfaNI	GCATC	2 cut(s)	507, 830
SfcI	CTRYAG	2 cut(s)	1042, 1449
SfoI	GGCGCC	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	807
SinI	GGWCC	1 cut(s)	459
SmiMI	CAYNNNNRTG	2 cut(s)	1070, 1155
SmlI	CTYRAG	2 cut(s)	168, 1743
SmoI	CTYRAG	2 cut(s)	168, 1743
Sse9I	AATT	8 cut(s)	563, 733, 905, 1413, 1424, 1477, 1671, 1736
SsiI	CCGC	5 cut(s)	111, 479, 916, 1861, 1884
SspDI	GGCGCC	1 cut(s)	58
SspMI	CTAG	5 cut(s)	191, 612, 795, 891, 1541
SstI	GAGCTC	1 cut(s)	1525
StyD4I	CCNGG	4 cut(s)	39, 784, 824, 1564
StyI	CCWWGG	3 cut(s)	254, 985, 1113
TaaI	ACNGT	3 cut(s)	158, 1043, 1287
TaiI	ACGT	2 cut(s)	91, 755
TaqI	TCGA	5 cut(s)	471, 807, 926, 1017, 1222
TasI	AATT	8 cut(s)	563, 733, 905, 1413, 1424, 1477, 1671, 1736
TatI	WGTACW	3 cut(s)	501, 744, 954
TfiI	GAWTC	3 cut(s)	235, 928, 1457
Tru1I	TTAA	4 cut(s)	864, 1254, 1416, 1888
Tru9I	TTAA	4 cut(s)	864, 1254, 1416, 1888
TscAI	CASTG	4 cut(s)	938, 1046, 1453, 1642
TseFI	GTSAC	5 cut(s)	158, 331, 529, 1611, 1863
TseI	GCWGC	6 cut(s)	185, 1345, 1384, 1531, 1628, 1787
Tsp45I	GTSAC	5 cut(s)	158, 331, 529, 1611, 1863
TspDTI	ATGAA	5 cut(s)	353, 937, 1040, 1326, 1749
TspRI	CASTG	4 cut(s)	938, 1046, 1453, 1642
VneI	GTGCAC	1 cut(s)	1148
VpaK11BI	GGWCC	1 cut(s)	459
XapI	RAATTY	2 cut(s)	1424, 1736
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	1 cut(s)	274
XspI	CTAG	5 cut(s)	191, 612, 795, 891, 1541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.