Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012456

Physical Location & Seq

Genomic Coordinates Forward (+)

37527206 .. 37529362

Gene Structure 2157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1277300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2157 bp

ATGGCTACCAGTGCTGTCCACTGGACTGTGAATTCCTCAGATACAAGGCGACCCATCTTCTTCTCTTCACCTTTTCGACAAATCCCAACCAAAAATTTCAACATTTCTTGCCGCTCCGCCAAGTCTCCTCCCAAATCCCCGCCGGATTTAGCGGAACCCACCACCAACAAGAAGAAGAACAAAAACCCATCTTTATCTTTGTCCGAGCAGCTCCAGCCTCTGACCACAACCACTCTCTCCGACCCTCCTCCGCCCCAAGACCAATCCCAGTTGATATCCAAGCCCAAATCCATCTGGGTCAACCCGGCCAAGCCGAAACGCTCCGTGCTCTCTCTGCAGCGGCAGAAGCGGTCTCTCTACTCTTACAATCCTCAGGTGAGAGATCTGAGGGGGTTTGCCCACAAACTCAACGACTGTGATGCCACCAAAGTTGCCTTCTTGGCTGCCCTTGAAGAAATCCCCCACCCGCCCACACGAGAAAATGCGCTTTTGATTCTGAATAGCTTGAAGCCATGGCAGAAAACCCACATGTTCTTCAATTGGGTGAAGTCCCAGAATTTGTTTCCAGTGGAAACCATATTCTACAATGTCACTATGAAGTCTCTGAGGTTCGGGAGGCAGTTTCAGCTCATCGAAGAGCTCGCGGAGGAGATGATAAGGGACGAGATTGAGCTCGATAACATTACGTATTCTACTATAATCACTTGTGCCAAGAGGTCCAAGCTTTTCGACAAGTCGGTCGAGTGGTTTGAGAGGATGTATAAGACCGGTTTGATGCCGGATGAGGTGACTTACTCTGCCATTTTAGATGTTTATGCTAAATTGGGCAAGGTTGAGGAGGTTCTTAGTTTGTATGAGAGGGGAAGAGCTAGTGGGTGGAAACCGGACCCAATTGCATTTTCGGTTTTGGGTAAGATGTTTGGGGAGGCTGGGGATTATGATGGTATTAGGTATGTATTGCAAGAAATGGCTGCTCTTGGTGTAGAACCTAATTTGGTTGTGTACAATACTTTGTTAGAGGCAATGGGGAAGGCCGGAAAGCCTGGTTTGGCAAGGAGCTTATTTGAAGAAATGGTGGAATCAGGGCTAACCCCGAATGAGAAAACATTGACGGCGCTTGTTAAGATCTATGGCAAGGCAAGGTGGGCTCGAGATGCCTTGGAATTGTGGGAGCGAATGAGGTCGAATAAGTGGCCTATGGACTTCATTTTGTATAACACATTGTTGAATATGTGTGCGGATCTTGGTTTGGAGGAGGAAGCTAAGATGCTTTTTGAGGATATGAAGCAGTCGGAGCATTGTAGGCCGGACAGTTGGAGTTACACTGCAATGCTGAACATCTATGGGAGCGGAGGGAATGTTGACGAGGCAATGAAATTGTTTGAAGAAATGTCCGAGTTGGGTATCGAGCTCAATGTCATGGGGTGCACTTGTTTGATTCAGGGCTTGGGGAAAGCTAGAAGATTCGGTGATATGGTTCGAGTCTTTGACGTTGCAGTTGAAAAAGGGGTTAAACCAGATGATAGGCTTTGTGGGTGCTTACTCTCTGTTGTATCGTTGTGCAAAGAAACTGGGGATGAGGATAGGGTGCTTTCTTGTTTGCAGCAGGCAAATCCAAAGTTGGTGACTCATGTCCAAGTGCTGCAAGATAAGAAAATCGGGTTTGAGACTATTAAAGATGAGTTCAGGGACGTTATTGGTAGGACTGCGGTTGAATCCCGGAGACCCTTCTGTAATTGCTTGATTGATATATGCCGAAACAAAAACAACCATGAGAGAGCTCATGAGCTGCTCTATTTGGGAACCCTATACGGGTTGTATCCGGGTCTACACAACAAGACTGCAAGGGAGTGGTGTTTGGACGTTAGGTCACTATCCATAGGTGCAGCTCACACTGCACTTGAAGAGTGGATGGGAACGCTCTACAAAATAGTAGAGCGGGAAGAGGCATTGCCGGAGATGTTCTCCGCTCAAACTGGTAGCGGAAGTCACAAATTCTCGCAAGGGCTGTCGCATTCCTTTGGTTCTCATGTGAAGAAATTGGCTGCGCCGTTTAGACAGAGTGAAGAGAAAGCTGGTTGTTTTGTGGCAACCAGGGAGGATCTAGTGTCGTGGGCGCAGTCACAGGCTCCGTCGCCGGCCGTCACAACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

719

Amino Acids

81.1

Weight (kDa)

7.49

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	214 - 273	4.5e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	278 - 378	1.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	319 - 379	1.3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	327 - 359	4.1e-06	PPR repeat
PPR_2	PF13041	330 - 375	2.5e-11	PPR repeat family
PPR	PF01535	333 - 363	2.2e-06	PPR repeat
PPR_long	PF17177	383 - 539	8.2e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	403 - 446	4.6e-08	PPR repeat family
PPR_1	PF12854	433 - 465	1.6e-07	PPR repeat
PPR_2	PF13041	436 - 473	3.5e-07	PPR repeat family
PPR	PF01535	440 - 469	5.8e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46580
fragaria_vesca	FvH4_5g21640
malus_domestica	MD06G1031400.v1.1 MD16G1277300.v1.1
prunus_persica	Prupe.5G040700_v2.0.a1
pyrus_communis	pycom06g02620 pycom16g24660
rosa_chinensis	RchiOBHm_Chr7g0209101
rosa_laevigata	RLG00000003167
rosa_multiflora	Rmu_co8470613.1_g000001 Rmu_sc0000821.1_g000010 Rmu_sc0009521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249750
rosa_rugosa	Rorug07G0109100
rosa_samantha	Rh7AG243500 Rh7BG238600 Rh7CG258700 Rh7DG250500
rosa_wichuraiana	Rw7G020640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	737
AccBSI	CCGCTC	4 cut(s)	114, 1350, 1939, 1970
AccI	GTMKAC	1 cut(s)	1828
AccII	CGCG	1 cut(s)	644
AclWI	GGATC	2 cut(s)	1248, 2109
AcoI	YGGCCR	2 cut(s)	306, 2139
AcsI	RAATTY	4 cut(s)	31, 94, 556, 1994
AfaI	GTAC	1 cut(s)	1004
AfiI	CCNNNNNNNGG	1 cut(s)	1812
AflIII	ACRYGT	1 cut(s)	528
AgeI	ACCGGT	1 cut(s)	767
AhdI	GACNNNNNGTC	1 cut(s)	1867
AjnI	CCWGG	2 cut(s)	1042, 2093
AjuI	GAANNNNNNNTTGG	4 cut(s)	419, 451, 883, 915
Alw21I	GWGCWC	6 cut(s)	330, 642, 675, 1413, 1430, 1783
Alw26I	GTCTC	5 cut(s)	129, 357, 606, 1661, 1717
Alw44I	GTGCAC	1 cut(s)	1426
AlwI	GGATC	2 cut(s)	1248, 2109
AlwNI	CAGNNNCTG	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	1149
AoxI	GGCC	5 cut(s)	306, 1032, 1193, 1304, 2139
ApaLI	GTGCAC	1 cut(s)	1426
ApeKI	GCWGC	9 cut(s)	208, 337, 443, 971, 1603, 1642, 1789, 1886, 2045
ApoI	RAATTY	4 cut(s)	31, 94, 556, 1994
AsiGI	ACCGGT	1 cut(s)	767
AspLEI	GCGC	4 cut(s)	487, 1117, 2050, 2119
AspS9I	GGNCC	2 cut(s)	717, 886
AsuC2I	CCSGG	3 cut(s)	305, 1720, 1824
AsuHPI	GGTGA	6 cut(s)	60, 388, 556, 799, 1481, 1636
AvaI	CYCGRG	1 cut(s)	1149
AvaII	GGWCC	2 cut(s)	717, 886
AxyI	CCTNAGG	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	1430
BanII	GRGCYC	5 cut(s)	642, 675, 1150, 1413, 1783
BauI	CACGAG	1 cut(s)	474
Bbv12I	GWGCWC	6 cut(s)	330, 642, 675, 1413, 1430, 1783
BbvI	GCAGC	9 cut(s)	220, 349, 430, 958, 1615, 1629, 1776, 1898, 2032
BccI	CCATC	5 cut(s)	62, 196, 299, 935, 1906
BceAI	ACGGC	3 cut(s)	1128, 2035, 2126
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	2 cut(s)	1044, 2095
BciVI	GTATCC	1 cut(s)	1830
BcnI	CCSGG	3 cut(s)	305, 1720, 1824
BcoDI	GTCTC	5 cut(s)	129, 357, 606, 1661, 1717
BfaI	CTAG	3 cut(s)	870, 1458, 2105
BfmI	CTRYAG	1 cut(s)	335
BfoI	RGCGCY	1 cut(s)	1118
BfuI	GTATCC	1 cut(s)	1830
BglI	GCCNNNNNGGC	1 cut(s)	440
BglII	AGATCT	2 cut(s)	382, 1125
Bme1390I	CCNGG	5 cut(s)	305, 1044, 1720, 1824, 2095
Bme18I	GGWCC	2 cut(s)	717, 886
BmeRI	GACNNNNNGTC	1 cut(s)	1867
BmeT110I	CYCGRG	1 cut(s)	1149
BmgT120I	GGNCC	2 cut(s)	717, 886
BmiI	GGNNCC	4 cut(s)	156, 888, 1804, 2130
BmrFI	CCNGG	5 cut(s)	305, 1044, 1720, 1824, 2095
BmrI	ACTGGG	2 cut(s)	262, 1581
BmsI	GCATC	4 cut(s)	409, 765, 1144, 1257
BmuI	ACTGGG	2 cut(s)	262, 1581
BoxI	GACNNNNGTC	1 cut(s)	1631
BplI	GAGNNNNNCTC	2 cut(s)	1949, 1981
BpmI	CTGGAG	1 cut(s)	197
BpuMI	CCSGG	3 cut(s)	305, 1720, 1824
BsaAI	YACGTR	1 cut(s)	687
BsaI	GGTCTC	2 cut(s)	357, 1717
BsaJI	CCNNGG	3 cut(s)	512, 1158, 2094
BsaWI	WCCGGW	2 cut(s)	767, 883
BsaXI	ACNNNNNCTCC	2 cut(s)	1344, 1374
Bsc4I	CCNNNNNNNGG	1 cut(s)	1812
Bse118I	RCCGGY	2 cut(s)	767, 2137
Bse1I	ACTGG	6 cut(s)	9, 26, 268, 566, 1576, 1981
Bse21I	CCTNAGG	1 cut(s)	372
Bse3DI	GCAATG	4 cut(s)	1029, 1335, 1377, 1949
BseBI	CCWGG	2 cut(s)	1044, 2095
BseDI	CCNNGG	3 cut(s)	512, 1158, 2094
BseGI	GGATG	4 cut(s)	762, 787, 1582, 1917
BseLI	CCNNNNNNNGG	1 cut(s)	1812
BseMI	GCAATG	4 cut(s)	1029, 1335, 1377, 1949
BseMII	CTCAG	4 cut(s)	51, 377, 386, 596
BseNI	ACTGG	6 cut(s)	9, 26, 268, 566, 1576, 1981
BseRI	GAGGAG	5 cut(s)	117, 237, 662, 851, 1268
BseSI	GKGCMC	1 cut(s)	1430
BseX3I	CGGCCG	1 cut(s)	2139
BseXI	GCAGC	9 cut(s)	220, 349, 430, 958, 1615, 1629, 1776, 1898, 2032
BseYI	CCCAGC	1 cut(s)	929
BsgI	GTGCAG	2 cut(s)	1881, 1905
Bsh1236I	CGCG	1 cut(s)	644
Bsh1285I	CGRYCG	2 cut(s)	741, 2142
BshFI	GGCC	5 cut(s)	308, 1034, 1195, 1306, 2141
BshTI	ACCGGT	1 cut(s)	767
BsiEI	CGRYCG	2 cut(s)	741, 2142
BsiHKAI	GWGCWC	6 cut(s)	330, 642, 675, 1413, 1430, 1783
BsiHKCI	CYCGRG	1 cut(s)	1149
BslFI	GGGAC	3 cut(s)	535, 674, 1703
BslI	CCNNNNNNNGG	1 cut(s)	1812
BsmAI	GTCTC	5 cut(s)	129, 357, 606, 1661, 1717
BsmFI	GGGAC	3 cut(s)	535, 674, 1703
BsmI	GAATGC	1 cut(s)	2014
BsnI	GGCC	5 cut(s)	308, 1034, 1195, 1306, 2141
Bso31I	GGTCTC	2 cut(s)	357, 1717
BsoBI	CYCGRG	1 cut(s)	1149
Bsp1286I	GDGCHC	7 cut(s)	330, 642, 675, 1150, 1413, 1430, 1783
Bsp1407I	TGTACA	1 cut(s)	1002
Bsp143I	GATC	4 cut(s)	382, 1125, 1240, 2101
Bsp19I	CCATGG	1 cut(s)	512
BspANI	GGCC	5 cut(s)	308, 1034, 1195, 1306, 2141
BspCNI	CTCAG	4 cut(s)	50, 378, 385, 597
BspFNI	CGCG	1 cut(s)	644
BspHI	TCATGA	1 cut(s)	1783
BspLI	GGNNCC	4 cut(s)	156, 888, 1804, 2130
BspMAI	CTGCAG	1 cut(s)	339
BspPI	GGATC	2 cut(s)	1248, 2109
BspQI	GCTCTTC	2 cut(s)	630, 859
BspTNI	GGTCTC	2 cut(s)	357, 1717
BsrBI	CCGCTC	4 cut(s)	114, 1350, 1939, 1970
BsrDI	GCAATG	4 cut(s)	1029, 1335, 1377, 1949
BsrFI	RCCGGY	2 cut(s)	767, 2137
BsrGI	TGTACA	1 cut(s)	1002
BsrI	ACTGG	6 cut(s)	9, 26, 268, 566, 1576, 1981
BssAI	RCCGGY	2 cut(s)	767, 2137
BssECI	CCNNGG	3 cut(s)	512, 1158, 2094
BssMI	GATC	4 cut(s)	382, 1125, 1240, 2101
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	2 cut(s)	512, 1158
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	1044, 2095
Bst4CI	ACNGT	3 cut(s)	28, 416, 1313
Bst6I	CTCTTC	6 cut(s)	70, 630, 859, 1899, 1938, 2061
BstAUI	TGTACA	1 cut(s)	1002
BstBAI	YACGTR	1 cut(s)	687
BstC8I	GCNNGC	3 cut(s)	642, 1608, 2139
BstDEI	CTNAG	6 cut(s)	37, 372, 386, 605, 845, 1263
BstDSI	CCRYGG	1 cut(s)	512
BstF5I	GGATG	4 cut(s)	762, 787, 1582, 1917
BstFNI	CGCG	1 cut(s)	644
BstH2I	RGCGCY	1 cut(s)	1118
BstHHI	GCGC	4 cut(s)	487, 1117, 2050, 2119
BstKTI	GATC	4 cut(s)	385, 1128, 1243, 2104
BstMAI	GTCTC	5 cut(s)	129, 357, 606, 1661, 1717
BstMBI	GATC	4 cut(s)	382, 1125, 1240, 2101
BstMCI	CGRYCG	2 cut(s)	741, 2142
BstNI	CCWGG	2 cut(s)	1044, 2095
BstNSI	RCATGY	1 cut(s)	532
BstPAI	GACNNNNGTC	1 cut(s)	1631
BstSCI	CCNGG	5 cut(s)	303, 1042, 1718, 1822, 2093
BstSFI	CTRYAG	1 cut(s)	335
BstSLI	GKGCMC	1 cut(s)	1430
BstSNI	TACGTA	1 cut(s)	687
BstUI	CGCG	1 cut(s)	644
BstV1I	GCAGC	9 cut(s)	220, 349, 430, 958, 1615, 1629, 1776, 1898, 2032
BstX2I	RGATCY	4 cut(s)	382, 1125, 1240, 2101
BstYI	RGATCY	4 cut(s)	382, 1125, 1240, 2101
BstZI	CGGCCG	1 cut(s)	2139
Bsu36I	CCTNAGG	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	1830
BsuRI	GGCC	5 cut(s)	308, 1034, 1195, 1306, 2141
BtgI	CCRYGG	1 cut(s)	512
BtsCI	GGATG	4 cut(s)	762, 787, 1582, 1917
BtsI	GCAGTG	2 cut(s)	1323, 1893
BtsIMutI	CAGTG	5 cut(s)	16, 19, 573, 1323, 1893
Cac8I	GCNNGC	3 cut(s)	642, 1608, 2139
CaiI	CAGNNNCTG	1 cut(s)	220
CciI	TCATGA	1 cut(s)	1783
CfoI	GCGC	4 cut(s)	487, 1117, 2050, 2119
Cfr10I	RCCGGY	2 cut(s)	767, 2137
Cfr13I	GGNCC	2 cut(s)	717, 886
Csp6I	GTAC	1 cut(s)	1003
CspAI	ACCGGT	1 cut(s)	767
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	7 cut(s)	513, 529, 1420, 1631, 1772, 1784, 2030
CviQI	GTAC	1 cut(s)	1003
DdeI	CTNAG	6 cut(s)	37, 372, 386, 605, 845, 1263
DpnI	GATC	4 cut(s)	384, 1127, 1242, 2103
DpnII	GATC	4 cut(s)	382, 1125, 1240, 2101
DrdI	GACNNNNNNGTC	1 cut(s)	737
DriI	GACNNNNNGTC	1 cut(s)	1867
DseDI	GACNNNNNNGTC	1 cut(s)	737
EaeI	YGGCCR	2 cut(s)	306, 2139
EagI	CGGCCG	1 cut(s)	2139
Eam1104I	CTCTTC	6 cut(s)	70, 630, 859, 1899, 1938, 2061
Eam1105I	GACNNNNNGTC	1 cut(s)	1867
EarI	CTCTTC	6 cut(s)	70, 630, 859, 1899, 1938, 2061
EciI	GGCGGA	2 cut(s)	106, 240
Ecl136II	GAGCTC	4 cut(s)	640, 673, 1411, 1781
EclXI	CGGCCG	1 cut(s)	2139
Eco105I	TACGTA	1 cut(s)	687
Eco130I	CCWWGG	2 cut(s)	512, 1158
Eco24I	GRGCYC	5 cut(s)	642, 675, 1150, 1413, 1783
Eco31I	GGTCTC	2 cut(s)	357, 1717
Eco32I	GATATC	1 cut(s)	276
Eco47I	GGWCC	2 cut(s)	717, 886
Eco52I	CGGCCG	1 cut(s)	2139
Eco53kI	GAGCTC	4 cut(s)	640, 673, 1411, 1781
Eco81I	CCTNAGG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	1149
EcoICRI	GAGCTC	4 cut(s)	640, 673, 1411, 1781
EcoRI	GAATTC	1 cut(s)	31
EcoRII	CCWGG	2 cut(s)	1042, 2093
EcoRV	GATATC	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	512, 1158
EcoT38I	GRGCYC	5 cut(s)	642, 675, 1150, 1413, 1783
ErhI	CCWWGG	2 cut(s)	512, 1158
FaeI	CATG	7 cut(s)	516, 532, 1423, 1634, 1775, 1787, 2033
FaqI	GGGAC	3 cut(s)	535, 674, 1703
FatI	CATG	7 cut(s)	512, 528, 1419, 1630, 1771, 1783, 2029
FauI	CCCGC	3 cut(s)	147, 474, 1932
FblI	GTMKAC	1 cut(s)	1828
FokI	GGATG	4 cut(s)	769, 794, 1589, 1924
FriOI	GRGCYC	5 cut(s)	642, 675, 1150, 1413, 1783
FspBI	CTAG	3 cut(s)	870, 1458, 2105
GlaI	GCGC	4 cut(s)	486, 1116, 2049, 2118
GsaI	CCCAGC	1 cut(s)	933
GsuI	CTGGAG	1 cut(s)	197
HaeII	RGCGCY	1 cut(s)	1118
HaeIII	GGCC	5 cut(s)	308, 1034, 1195, 1306, 2141
HhaI	GCGC	4 cut(s)	487, 1117, 2050, 2119
Hin1II	CATG	7 cut(s)	516, 532, 1423, 1634, 1775, 1787, 2033
Hin6I	GCGC	4 cut(s)	485, 1115, 2048, 2117
HinP1I	GCGC	4 cut(s)	485, 1115, 2048, 2117
HincII	GTYRAC	2 cut(s)	301, 1363
HindII	GTYRAC	2 cut(s)	301, 1363
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	7 cut(s)	493, 1079, 1438, 1464, 1482, 1627, 1715
HphI	GGTGA	6 cut(s)	60, 388, 556, 799, 1481, 1636
Hpy166II	GTNNAC	6 cut(s)	19, 301, 1003, 1363, 1428, 1829
Hpy188I	TCNGA	9 cut(s)	40, 205, 222, 241, 387, 498, 606, 1294, 1396
Hpy188III	TCNNGA	3 cut(s)	613, 1151, 1784
Hpy8I	GTNNAC	6 cut(s)	19, 301, 1003, 1363, 1428, 1829
Hpy99I	CGWCG	1 cut(s)	2137
HpyAV	CCTTC	3 cut(s)	445, 1024, 1738
HpyCH4III	ACNGT	3 cut(s)	28, 416, 1313
HpyCH4IV	ACGT	4 cut(s)	686, 1491, 1692, 1863
HpyF3I	CTNAG	6 cut(s)	37, 372, 386, 605, 845, 1263
HpySE526I	ACGT	4 cut(s)	686, 1491, 1692, 1863
Hsp92II	CATG	7 cut(s)	516, 532, 1423, 1634, 1775, 1787, 2033
HspAI	GCGC	4 cut(s)	485, 1115, 2048, 2117
KroI	GCCGGC	1 cut(s)	2137
KroNI	GCCGGC	1 cut(s)	2139
Kzo9I	GATC	4 cut(s)	382, 1125, 1240, 2101
LguI	GCTCTTC	2 cut(s)	630, 859
LmnI	GCTCC	8 cut(s)	119, 216, 326, 1056, 1171, 1294, 1347, 2134
Lsp1109I	GCAGC	9 cut(s)	220, 349, 430, 958, 1615, 1629, 1776, 1898, 2032
LweI	GCATC	4 cut(s)	409, 765, 1144, 1257
MaeI	CTAG	3 cut(s)	870, 1458, 2105
MaeII	ACGT	4 cut(s)	686, 1491, 1692, 1863
MaeIII	GTNAC	8 cut(s)	589, 787, 1319, 1624, 1869, 1988, 2121, 2143
MalI	GATC	4 cut(s)	384, 1127, 1242, 2103
MbiI	CCGCTC	4 cut(s)	114, 1350, 1939, 1970
MboI	GATC	4 cut(s)	382, 1125, 1240, 2101
MfeI	CAATTG	2 cut(s)	538, 891
MflI	RGATCY	4 cut(s)	382, 1125, 1240, 2101
MhlI	GDGCHC	7 cut(s)	330, 642, 675, 1150, 1413, 1430, 1783
MlyI	GAGTC	2 cut(s)	1491, 1621
MmeI	TCCRAC	3 cut(s)	264, 1272, 1295
MroNI	GCCGGC	1 cut(s)	2137
MseI	TTAA	4 cut(s)	1122, 1512, 1674, 2155
MslI	CAYNNNNRTG	1 cut(s)	1328
MspA1I	CMGCKG	1 cut(s)	340
MspR9I	CCNGG	5 cut(s)	305, 1044, 1720, 1824, 2095
MunI	CAATTG	2 cut(s)	538, 891
Mva1269I	GAATGC	1 cut(s)	2014
MvaI	CCWGG	2 cut(s)	1044, 2095
MvnI	CGCG	1 cut(s)	644
NaeI	GCCGGC	1 cut(s)	2139
NciI	CCSGG	3 cut(s)	305, 1720, 1824
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	4 cut(s)	382, 1125, 1240, 2101
NgoMIV	GCCGGC	1 cut(s)	2137
NlaIII	CATG	7 cut(s)	516, 532, 1423, 1634, 1775, 1787, 2033
NlaIV	GGNNCC	4 cut(s)	156, 888, 1804, 2130
NmuCI	GTSAC	7 cut(s)	589, 787, 1624, 1869, 1988, 2121, 2143
NspI	RCATGY	1 cut(s)	532
PaeR7I	CTCGAG	1 cut(s)	1149
PagI	TCATGA	1 cut(s)	1783
PciI	ACATGT	1 cut(s)	528
PciSI	GCTCTTC	2 cut(s)	630, 859
PctI	GAATGC	1 cut(s)	2014
PdiI	GCCGGC	1 cut(s)	2139
PfeI	GAWTC	5 cut(s)	493, 1079, 1438, 1464, 1715
PfoI	TCCNGGA	1 cut(s)	1718
PinAI	ACCGGT	1 cut(s)	767
PleI	GAGTC	2 cut(s)	1490, 1621
PpsI	GAGTC	2 cut(s)	1490, 1621
Ppu21I	YACGTR	1 cut(s)	687
PscI	ACATGT	1 cut(s)	528
PshAI	GACNNNNGTC	1 cut(s)	1631
Psp124BI	GAGCTC	4 cut(s)	642, 675, 1413, 1783
Psp6I	CCWGG	2 cut(s)	1042, 2093
PspFI	CCCAGC	1 cut(s)	929
PspGI	CCWGG	2 cut(s)	1042, 2093
PspN4I	GGNNCC	4 cut(s)	156, 888, 1804, 2130
PspPI	GGNCC	2 cut(s)	717, 886
PstI	CTGCAG	1 cut(s)	339
PstNI	CAGNNNCTG	1 cut(s)	220
PsuI	RGATCY	4 cut(s)	382, 1125, 1240, 2101
RsaI	GTAC	1 cut(s)	1004
RsaNI	GTAC	1 cut(s)	1003
RseI	CAYNNNNRTG	1 cut(s)	1328
SacI	GAGCTC	4 cut(s)	642, 675, 1413, 1783
SapI	GCTCTTC	2 cut(s)	630, 859
SaqAI	TTAA	4 cut(s)	1122, 1512, 1674, 2155
Sau3AI	GATC	4 cut(s)	382, 1125, 1240, 2101
Sau96I	GGNCC	2 cut(s)	717, 886
SchI	GAGTC	2 cut(s)	1491, 1621
ScrFI	CCNGG	5 cut(s)	305, 1044, 1720, 1824, 2095
SduI	GDGCHC	7 cut(s)	330, 642, 675, 1150, 1413, 1430, 1783
SfaNI	GCATC	4 cut(s)	409, 765, 1144, 1257
SfcI	CTRYAG	1 cut(s)	335
Sfr274I	CTCGAG	1 cut(s)	1149
SinI	GGWCC	2 cut(s)	717, 886
SlaI	CTCGAG	1 cut(s)	1149
SmiMI	CAYNNNNRTG	1 cut(s)	1328
SmlI	CTYRAG	1 cut(s)	1149
SmoI	CTYRAG	1 cut(s)	1149
SnaBI	TACGTA	1 cut(s)	687
SspMI	CTAG	3 cut(s)	870, 1458, 2105
SstI	GAGCTC	4 cut(s)	642, 675, 1413, 1783
StyD4I	CCNGG	5 cut(s)	303, 1042, 1718, 1822, 2093
StyI	CCWWGG	2 cut(s)	512, 1158
TaaI	ACNGT	3 cut(s)	28, 416, 1313
TaiI	ACGT	4 cut(s)	689, 1494, 1695, 1866
TaqI	TCGA	9 cut(s)	76, 633, 675, 729, 741, 1150, 1184, 1407, 1480
TaqII	GACCGA	1 cut(s)	727
TatI	WGTACW	1 cut(s)	1002
TauI	GCSGC	2 cut(s)	114, 343
TfiI	GAWTC	5 cut(s)	493, 1079, 1438, 1464, 1715
Tru1I	TTAA	4 cut(s)	1122, 1512, 1674, 2155
Tru9I	TTAA	4 cut(s)	1122, 1512, 1674, 2155
TscAI	CASTG	5 cut(s)	16, 26, 573, 1330, 1900
TseFI	GTSAC	7 cut(s)	589, 787, 1624, 1869, 1988, 2121, 2143
TseI	GCWGC	9 cut(s)	208, 337, 443, 971, 1603, 1642, 1789, 1886, 2045
Tsp45I	GTSAC	7 cut(s)	589, 787, 1624, 1869, 1988, 2121, 2143
TspDTI	ATGAA	4 cut(s)	611, 1195, 1298, 1388
TspGWI	ACGGA	2 cut(s)	313, 2121
TspRI	CASTG	5 cut(s)	16, 26, 573, 1330, 1900
VneI	GTGCAC	1 cut(s)	1426
VpaK11BI	GGWCC	2 cut(s)	717, 886
XapI	RAATTY	4 cut(s)	31, 94, 556, 1994
XceI	RCATGY	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	1149
XmiI	GTMKAC	1 cut(s)	1828
XspI	CTAG	3 cut(s)	870, 1458, 2105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.