Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012456

Physical Location & Seq

Genomic Coordinates Reverse (-)

25191592 .. 25193730

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG258700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2139 bp

ATGGCTACTACTAGTACTAGTAGCATTCACTTCACTGTGAATTCCTCAGAAACCAAGAGACCCATCTTCTTCACTTCACCAATCAAACTAATCCCACCCAAAAGATTCACCATTTCTTGCAGGTCTACCAAGTCCCCTCCAAAATCTCCACCAGATTTATCACAACCCAATAACAAGAACAAAACCCCATCTTTGTCTGACCAACTCAAGCCTCTAACCACCACCACTCTCTCCACCCCTCCTCCCAAAGACCAACCCCAAGTCCTATCCAAGCCCAAGTCCATCTGGGTCAACCCGGCCAAGCCCAAACGCTCTGTGCTATCCCTCCAGAGGCAGAAGCGCTCTCTCTACTCCTACAATCCTCAGGTCAGAGATCTCAGGCTCTTTGCCCAGAAGCTCAATGACTGTGACTCCTCTCAAGAAGCATTCTTGGCTGCTCTAGAAGAAATCCCACACCCACCCACCAGAGAAAATGCCCTTTTGATTCTCAACAGCTTGAAGCCATGGCAGAAAACCCACATGTTCTTCAACTGGGTCAAGTCCCAGAACCTGTTTCCAATGGAGACCATCTTCTACAATGTCACCATGAAGTCCATGAGGTTTGGGAGGCAGTTTCAGCTCATTGAGGAGCTTGCTGAGGAGATGATAAGCAATGGGGTTGCGCTTGACAACATTACTTACTCCACTATAATCACTTGTGCCAAAAGGTCCAAGCTTTTCGACAAGGCGGTGGAGTGGTTTGAGAGGATGTACAAGACTGGTTTGATGCCTGATGAGGTGACTTACTCTGCTATTTTAGATGTTTATGCCAAATTGGGCAAGGTTGAGGAGGTGCTTAGTTTATATGAGAGAGGGAGGGCTAGTGGGTGGACACCTGACCCTATTGCATTTTCTGTGTTGGGTAAGATGTTTGGTGAGGCTGGGGACTATGATGGTATTAGGTATGTCTTGCAGGAAATGGCTTCTATTGGTGTGAAGCCTAATTTGGTCGTGTACAATACGTTGTTAGAGGCAATGGGGAAGGCTGGAAAGCCTGGTTTAGCTAGGAGCTTGTTCGAAGAAATGGTTGCATCCGGGCTGAAACCGAATGAGAAAACATTGACTGCGCTTGTTAAGATCTATGGCAAGGCGAGGTGGGCTAGAGACGCGTTGGAATTGTGGGAGCGGATGAGGTCGAATCAGTGGCCGATGGACTTTATTTTGTATAACACATTGTTGAATATGTGTGCTGACCTTGGCTTGGAGGATGAGGCTAAGAGGCTTTTTGAGGATATGAAGCAGTCGGAGCACTGTAGGCCGGATAGTTATAGTTACACGGCAATGTTGAACATCTTTGGGAGTGGTGGGAATGCTGATGAGGCCATGGAGTTGTTTGAAGAAATGTCCAAGAAGGGTGTGCACCTCAATGTCATGGGTTGCACTTGTTTGATACAATGCTTGGGGAGAGCTAAAAGATTTGGTGATATGGTTCGAGTCTTCAATGTTGCAGTTGAAAGAGGGGTTAAACCAGATGATAGGCTCTGTGGGTGTTTACTGTCTGTTGTGTCGTTGTGTGAAAAAACTGAGGATGAGGATATGGTCTTTTCATGCTTGCAGCAGGCTAATCCGAAGTTGGTTACCCTCGTAAAAGTGCTGCAAGATGAGAAAGTAGGGTTTGAGGCAATTAAAGACGAATTTAGGGATGTTATTGGTAGCACTGCAGTTGAATCCAGAAGACCCTTCTGCAATTGCTTGATTGATATATGCAGAAACAAAAATAACCACGAGAGAGCTCATGAGCTGCTCTATCTAGGAACCCTATATGGGTTGTATCCGGGTTTACACAACAAGACAGCGAATGAGTGGTGTTTAGATGTTAGGTCACTATCCATTGGTGCTGCTCACACTGCACTTGAAGAGTGGATGGGAACTCTATACAAAATTGTTCAGCGTGAAGAGGCACTGCCGAAGTTGTTTTCTGCTCAAACCGGTGCTGGAACTCACAAATTTTCTCAAGGACTGGCCCATTCATTTGGTTCTCATGTGAAGAAGTTGGCTGCACCATTTCGGCAGAGTGAAGAGAAAGCTGGTTGTTTTGTGGCAACTCGGGAGGATTTAGTGTCGTGGGTGCAGTCACAGGCACAATCAATCACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

712

Amino Acids

80.24

Weight (kDa)

8.56

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	211 - 270	5.9e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	229 - 271	5.1e-07	PPR repeat family
PPR_long	PF17177	276 - 374	2.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	324 - 356	3.4e-06	PPR repeat
PPR_2	PF13041	327 - 372	3.2e-11	PPR repeat family
PPR_long	PF17177	380 - 535	2e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	400 - 443	3.2e-09	PPR repeat family
PPR_1	PF12854	430 - 462	1.3e-06	PPR repeat
PPR_2	PF13041	433 - 470	5.2e-07	PPR repeat family
PPR	PF01535	436 - 466	2.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46580
fragaria_vesca	FvH4_5g21640
malus_domestica	MD06G1031400.v1.1 MD16G1277300.v1.1
prunus_persica	Prupe.5G040700_v2.0.a1
pyrus_communis	pycom06g02620 pycom16g24660
rosa_chinensis	RchiOBHm_Chr7g0209101
rosa_laevigata	RLG00000003167
rosa_multiflora	Rmu_co8470613.1_g000001 Rmu_sc0000821.1_g000010 Rmu_sc0009521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249750
rosa_rugosa	Rorug07G0109100
rosa_samantha	Rh7AG243500 Rh7BG238600 Rh7CG258700 Rh7DG250500
rosa_wichuraiana	Rw7G020640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	111
AccBSI	CCGCTC	1 cut(s)	1165
AccI	GTMKAC	1 cut(s)	125
AccII	CGCG	1 cut(s)	1148
AciI	CCGC	2 cut(s)	728, 1165
AcoI	YGGCCR	2 cut(s)	297, 1184
AcsI	RAATTY	3 cut(s)	40, 1673, 1985
AfaI	GTAC	3 cut(s)	16, 752, 995
AfeI	AGCGCT	1 cut(s)	341
AfiI	CCNNNNNNNGG	3 cut(s)	330, 1240, 1803
AflIII	ACRYGT	2 cut(s)	519, 1146
AgeI	ACCGGT	1 cut(s)	1967
AgsI	TTSAA	9 cut(s)	499, 529, 1219, 1327, 1376, 1480, 1493, 1706, 1895
AhlI	ACTAGT	2 cut(s)	11, 17
AjnI	CCWGG	1 cut(s)	1033
AjuI	GAANNNNNNNTTGG	2 cut(s)	968, 1000
Alw21I	GWGCWC	3 cut(s)	1290, 1401, 1774
Alw26I	GTCTC	3 cut(s)	52, 557, 1137
Alw44I	GTGCAC	1 cut(s)	1397
AlwNI	CAGNNNCTG	1 cut(s)	550
Ama87I	CYCGRG	1 cut(s)	2085
Aor51HI	AGCGCT	1 cut(s)	341
AoxI	GGCC	5 cut(s)	297, 1184, 1295, 1359, 2001
ApaLI	GTGCAC	1 cut(s)	1397
ApeKI	GCWGC	6 cut(s)	434, 1594, 1633, 1780, 1877, 2036
ApoI	RAATTY	3 cut(s)	40, 1673, 1985
AsiGI	ACCGGT	1 cut(s)	1967
AspLEI	GCGC	3 cut(s)	342, 664, 1108
AspS9I	GGNCC	2 cut(s)	708, 2002
AsuC2I	CCSGG	3 cut(s)	296, 1075, 1815
AsuHPI	GGTGA	6 cut(s)	69, 100, 574, 790, 926, 1472
AsuII	TTCGAA	1 cut(s)	1056
AvaI	CYCGRG	1 cut(s)	2085
AvaII	GGWCC	1 cut(s)	708
AxyI	CCTNAGG	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	1401
BanII	GRGCYC	1 cut(s)	1774
BauI	CACGAG	1 cut(s)	1763
BbsI	GAAGAC	2 cut(s)	1468, 1720
Bbv12I	GWGCWC	3 cut(s)	1290, 1401, 1774
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	6 cut(s)	421, 1606, 1620, 1767, 1864, 2023
BccI	CCATC	7 cut(s)	71, 196, 290, 575, 926, 1183, 1897
BceAI	ACGGC	1 cut(s)	1332
BciT130I	CCWGG	1 cut(s)	1035
BciVI	GTATCC	1 cut(s)	1821
BcnI	CCSGG	3 cut(s)	296, 1075, 1815
BcoDI	GTCTC	3 cut(s)	52, 557, 1137
BcuI	ACTAGT	2 cut(s)	11, 17
BfaI	CTAG	7 cut(s)	12, 18, 440, 861, 1044, 1140, 1790
BfmI	CTRYAG	2 cut(s)	1291, 1698
BfoI	RGCGCY	1 cut(s)	343
BfuAI	ACCTGC	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	1821
BglII	AGATCT	2 cut(s)	373, 1116
BisI	GCNGC	6 cut(s)	435, 1595, 1634, 1781, 1878, 2037
BlsI	GCNGC	6 cut(s)	436, 1596, 1635, 1782, 1879, 2038
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	4 cut(s)	296, 1035, 1075, 1815
Bme18I	GGWCC	1 cut(s)	708
BmeT110I	CYCGRG	1 cut(s)	2085
BmgT120I	GGNCC	2 cut(s)	708, 2002
BmiI	GGNNCC	1 cut(s)	1795
BmrFI	CCNGG	4 cut(s)	296, 1035, 1075, 1815
BmrI	ACTGGG	1 cut(s)	541
BmsI	GCATC	2 cut(s)	756, 1079
BmuI	ACTGGG	1 cut(s)	541
BpiI	GAAGAC	2 cut(s)	1468, 1720
BpmI	CTGGAG	1 cut(s)	311
Bpu10I	CCTNAGC	1 cut(s)	636
Bpu14I	TTCGAA	1 cut(s)	1056
BpuEI	CTTGAG	3 cut(s)	191, 402, 1977
BpuMI	CCSGG	3 cut(s)	296, 1075, 1815
BsaI	GGTCTC	2 cut(s)	52, 557
BsaJI	CCNNGG	3 cut(s)	503, 1234, 1362
BsaWI	WCCGGW	1 cut(s)	1967
BsaXI	ACNNNNNCTCC	6 cut(s)	226, 256, 395, 425, 847, 877
Bsc4I	CCNNNNNNNGG	3 cut(s)	330, 1240, 1803
Bse118I	RCCGGY	1 cut(s)	1967
Bse1I	ACTGG	3 cut(s)	536, 763, 2004
Bse21I	CCTNAGG	1 cut(s)	363
Bse3DI	GCAATG	3 cut(s)	658, 1020, 1326
BseBI	CCWGG	1 cut(s)	1035
BseDI	CCNNGG	3 cut(s)	503, 1234, 1362
BseGI	GGATG	7 cut(s)	753, 1070, 1173, 1252, 1573, 1687, 1908
BseLI	CCNNNNNNNGG	3 cut(s)	330, 1240, 1803
BseMI	GCAATG	3 cut(s)	658, 1020, 1326
BseMII	CTCAG	5 cut(s)	60, 377, 391, 627, 1554
BseNI	ACTGG	3 cut(s)	536, 763, 2004
BseRI	GAGGAG	5 cut(s)	231, 403, 641, 653, 842
BseSI	GKGCMC	1 cut(s)	1401
BseXI	GCAGC	6 cut(s)	421, 1606, 1620, 1767, 1864, 2023
BseYI	CCCAGC	1 cut(s)	920
BsgI	GTGCAG	3 cut(s)	1872, 2022, 2129
Bsh1236I	CGCG	1 cut(s)	1148
BshFI	GGCC	5 cut(s)	299, 1186, 1297, 1361, 2003
BshTI	ACCGGT	1 cut(s)	1967
BsiHKAI	GWGCWC	3 cut(s)	1290, 1401, 1774
BsiHKCI	CYCGRG	1 cut(s)	2085
BsiSI	CCGG	5 cut(s)	296, 1074, 1298, 1814, 1968
BslFI	GGGAC	3 cut(s)	118, 526, 938
BslI	CCNNNNNNNGG	3 cut(s)	330, 1240, 1803
BsmAI	GTCTC	3 cut(s)	52, 557, 1137
BsmBI	CGTCTC	1 cut(s)	1137
BsmFI	GGGAC	3 cut(s)	118, 526, 938
BsmI	GAATGC	3 cut(s)	24, 425, 1354
BsnI	GGCC	5 cut(s)	299, 1186, 1297, 1361, 2003
Bso31I	GGTCTC	2 cut(s)	52, 557
BsoBI	CYCGRG	1 cut(s)	2085
Bsp119I	TTCGAA	1 cut(s)	1056
Bsp1286I	GDGCHC	3 cut(s)	1290, 1401, 1774
Bsp1407I	TGTACA	2 cut(s)	750, 993
Bsp143I	GATC	2 cut(s)	373, 1116
Bsp19I	CCATGG	2 cut(s)	503, 1362
BspACI	CCGC	2 cut(s)	728, 1165
BspANI	GGCC	5 cut(s)	299, 1186, 1297, 1361, 2003
BspCNI	CTCAG	5 cut(s)	59, 376, 390, 628, 1555
BspFNI	CGCG	1 cut(s)	1148
BspHI	TCATGA	1 cut(s)	1774
BspLI	GGNNCC	1 cut(s)	1795
BspMAI	CTGCAG	1 cut(s)	1702
BspMI	ACCTGC	1 cut(s)	111
BspT104I	TTCGAA	1 cut(s)	1056
BspTNI	GGTCTC	2 cut(s)	52, 557
BsrBI	CCGCTC	1 cut(s)	1165
BsrDI	GCAATG	3 cut(s)	658, 1020, 1326
BsrFI	RCCGGY	1 cut(s)	1967
BsrGI	TGTACA	2 cut(s)	750, 993
BsrI	ACTGG	3 cut(s)	536, 763, 2004
BssAI	RCCGGY	1 cut(s)	1967
BssECI	CCNNGG	3 cut(s)	503, 1234, 1362
BssMI	GATC	2 cut(s)	373, 1116
BssSI	CACGAG	1 cut(s)	1763
BssT1I	CCWWGG	3 cut(s)	503, 1234, 1362
Bst2BI	CACGAG	1 cut(s)	1763
Bst2UI	CCWGG	1 cut(s)	1035
Bst4CI	ACNGT	4 cut(s)	37, 407, 1292, 1536
Bst6I	CTCTTC	3 cut(s)	1890, 1929, 2052
BstAUI	TGTACA	2 cut(s)	750, 993
BstBI	TTCGAA	1 cut(s)	1056
BstC8I	GCNNGC	3 cut(s)	633, 1592, 1599
BstDEI	CTNAG	7 cut(s)	46, 363, 377, 636, 836, 1254, 1563
BstDSI	CCRYGG	2 cut(s)	503, 1362
BstEII	GGTNACC	1 cut(s)	1615
BstF5I	GGATG	7 cut(s)	753, 1070, 1173, 1252, 1573, 1687, 1908
BstFNI	CGCG	1 cut(s)	1148
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	3 cut(s)	342, 664, 1108
BstKTI	GATC	2 cut(s)	376, 1119
BstMAI	GTCTC	3 cut(s)	52, 557, 1137
BstMBI	GATC	2 cut(s)	373, 1116
BstMWI	GCNNNNNNNGC	8 cut(s)	431, 616, 1136, 1145, 1285, 1294, 1358, 1886
BstNI	CCWGG	1 cut(s)	1035
BstNSI	RCATGY	1 cut(s)	523
BstPI	GGTNACC	1 cut(s)	1615
BstSCI	CCNGG	4 cut(s)	294, 1033, 1073, 1813
BstSFI	CTRYAG	2 cut(s)	1291, 1698
BstSLI	GKGCMC	1 cut(s)	1401
BstUI	CGCG	1 cut(s)	1148
BstV1I	GCAGC	6 cut(s)	421, 1606, 1620, 1767, 1864, 2023
BstV2I	GAAGAC	2 cut(s)	1468, 1720
BstX2I	RGATCY	2 cut(s)	373, 1116
BstXI	CCANNNNNNTGG	1 cut(s)	2012
BstYI	RGATCY	2 cut(s)	373, 1116
Bsu36I	CCTNAGG	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	1821
BsuRI	GGCC	5 cut(s)	299, 1186, 1297, 1361, 2003
BtgI	CCRYGG	2 cut(s)	503, 1362
BtsCI	GGATG	7 cut(s)	753, 1070, 1173, 1252, 1573, 1687, 1908
BtsI	GCAGTG	4 cut(s)	1695, 1884, 1940, 2130
BtsIMutI	CAGTG	7 cut(s)	33, 1187, 1288, 1695, 1884, 1940, 2130
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	633, 1592, 1599
CaiI	CAGNNNCTG	1 cut(s)	550
CciI	TCATGA	1 cut(s)	1774
CfoI	GCGC	3 cut(s)	342, 664, 1108
Cfr10I	RCCGGY	1 cut(s)	1967
Cfr13I	GGNCC	2 cut(s)	708, 2002
CseI	GACGC	1 cut(s)	1154
Csp6I	GTAC	3 cut(s)	15, 751, 994
CspAI	ACCGGT	1 cut(s)	1967
CviAII	CATG	9 cut(s)	504, 520, 586, 595, 1363, 1411, 1587, 1775, 2021
CviQI	GTAC	3 cut(s)	15, 751, 994
DdeI	CTNAG	7 cut(s)	46, 363, 377, 636, 836, 1254, 1563
DpnI	GATC	2 cut(s)	375, 1118
DpnII	GATC	2 cut(s)	373, 1116
EaeI	YGGCCR	2 cut(s)	297, 1184
Eam1104I	CTCTTC	3 cut(s)	1890, 1929, 2052
EarI	CTCTTC	3 cut(s)	1890, 1929, 2052
Ecl136II	GAGCTC	1 cut(s)	1772
Eco130I	CCWWGG	3 cut(s)	503, 1234, 1362
Eco24I	GRGCYC	1 cut(s)	1774
Eco31I	GGTCTC	2 cut(s)	52, 557
Eco47I	GGWCC	1 cut(s)	708
Eco47III	AGCGCT	1 cut(s)	341
Eco53kI	GAGCTC	1 cut(s)	1772
Eco81I	CCTNAGG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	2085
Eco91I	GGTNACC	1 cut(s)	1615
EcoICRI	GAGCTC	1 cut(s)	1772
EcoO65I	GGTNACC	1 cut(s)	1615
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	1033
EcoT14I	CCWWGG	3 cut(s)	503, 1234, 1362
EcoT38I	GRGCYC	1 cut(s)	1774
ErhI	CCWWGG	3 cut(s)	503, 1234, 1362
Esp3I	CGTCTC	1 cut(s)	1137
FaeI	CATG	9 cut(s)	507, 523, 589, 598, 1366, 1414, 1590, 1778, 2024
FaqI	GGGAC	3 cut(s)	118, 526, 938
FatI	CATG	9 cut(s)	503, 519, 585, 594, 1362, 1410, 1586, 1774, 2020
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	6 cut(s)	435, 1595, 1634, 1781, 1878, 2037
FokI	GGATG	7 cut(s)	760, 1057, 1180, 1259, 1580, 1694, 1915
FriOI	GRGCYC	1 cut(s)	1774
Fsp4HI	GCNGC	6 cut(s)	435, 1595, 1634, 1781, 1878, 2037
FspBI	CTAG	7 cut(s)	12, 18, 440, 861, 1044, 1140, 1790
GlaI	GCGC	3 cut(s)	341, 663, 1107
GluI	GCNGC	6 cut(s)	435, 1595, 1634, 1781, 1878, 2037
GsaI	CCCAGC	1 cut(s)	924
GsuI	CTGGAG	1 cut(s)	311
HaeII	RGCGCY	1 cut(s)	343
HaeIII	GGCC	5 cut(s)	299, 1186, 1297, 1361, 2003
HapII	CCGG	5 cut(s)	296, 1074, 1298, 1814, 1968
HgaI	GACGC	1 cut(s)	1154
HhaI	GCGC	3 cut(s)	342, 664, 1108
Hin1II	CATG	9 cut(s)	507, 523, 589, 598, 1366, 1414, 1590, 1778, 2024
Hin6I	GCGC	3 cut(s)	340, 662, 1106
HinP1I	GCGC	3 cut(s)	340, 662, 1106
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	6 cut(s)	105, 410, 484, 1177, 1473, 1706
HpaII	CCGG	5 cut(s)	296, 1074, 1298, 1814, 1968
HphI	GGTGA	6 cut(s)	69, 100, 574, 790, 926, 1472
Hpy166II	GTNNAC	7 cut(s)	126, 292, 870, 994, 1399, 1532, 1820
Hpy188I	TCNGA	5 cut(s)	49, 199, 371, 1285, 1608
Hpy188III	TCNNGA	6 cut(s)	328, 419, 440, 1710, 1775, 2087
Hpy8I	GTNNAC	7 cut(s)	126, 292, 870, 994, 1399, 1532, 1820
HpyAV	CCTTC	3 cut(s)	1015, 1384, 1729
HpyCH4III	ACNGT	4 cut(s)	37, 407, 1292, 1536
HpyCH4IV	ACGT	1 cut(s)	1001
HpyF10VI	GCNNNNNNNGC	8 cut(s)	431, 616, 1136, 1145, 1285, 1294, 1358, 1886
HpyF3I	CTNAG	7 cut(s)	46, 363, 377, 636, 836, 1254, 1563
HpySE526I	ACGT	1 cut(s)	1001
Hsp92II	CATG	9 cut(s)	507, 523, 589, 598, 1366, 1414, 1590, 1778, 2024
HspAI	GCGC	3 cut(s)	340, 662, 1106
Kzo9I	GATC	2 cut(s)	373, 1116
LmnI	GCTCC	4 cut(s)	628, 1047, 1162, 1285
Lsp1109I	GCAGC	6 cut(s)	421, 1606, 1620, 1767, 1864, 2023
LweI	GCATC	2 cut(s)	756, 1079
MaeI	CTAG	7 cut(s)	12, 18, 440, 861, 1044, 1140, 1790
MaeII	ACGT	1 cut(s)	1001
MaeIII	GTNAC	7 cut(s)	407, 580, 778, 1310, 1615, 1860, 2112
MalI	GATC	2 cut(s)	375, 1118
MbiI	CCGCTC	1 cut(s)	1165
MboI	GATC	2 cut(s)	373, 1116
MfeI	CAATTG	1 cut(s)	1726
MflI	RGATCY	2 cut(s)	373, 1116
MhlI	GDGCHC	3 cut(s)	1290, 1401, 1774
MluCI	AATT	9 cut(s)	40, 812, 982, 1154, 1662, 1673, 1726, 1920, 1985
MluI	ACGCGT	1 cut(s)	1146
MlyI	GAGTC	2 cut(s)	404, 1482
MmeI	TCCRAC	2 cut(s)	1131, 1263
MseI	TTAA	4 cut(s)	1113, 1503, 1665, 2137
MslI	CAYNNNNRTG	2 cut(s)	1319, 1404
MspI	CCGG	5 cut(s)	296, 1074, 1298, 1814, 1968
MspR9I	CCNGG	4 cut(s)	296, 1035, 1075, 1815
MunI	CAATTG	1 cut(s)	1726
Mva1269I	GAATGC	3 cut(s)	24, 425, 1354
MvaI	CCWGG	1 cut(s)	1035
MvnI	CGCG	1 cut(s)	1148
MwoI	GCNNNNNNNGC	8 cut(s)	431, 616, 1136, 1145, 1285, 1294, 1358, 1886
NciI	CCSGG	3 cut(s)	296, 1075, 1815
NcoI	CCATGG	2 cut(s)	503, 1362
NdeII	GATC	2 cut(s)	373, 1116
NlaIII	CATG	9 cut(s)	507, 523, 589, 598, 1366, 1414, 1590, 1778, 2024
NlaIV	GGNNCC	1 cut(s)	1795
NmuCI	GTSAC	5 cut(s)	407, 580, 778, 1860, 2112
NspI	RCATGY	1 cut(s)	523
NspV	TTCGAA	1 cut(s)	1056
PagI	TCATGA	1 cut(s)	1774
PciI	ACATGT	1 cut(s)	519
PctI	GAATGC	3 cut(s)	24, 425, 1354
PfeI	GAWTC	4 cut(s)	105, 484, 1177, 1706
PinAI	ACCGGT	1 cut(s)	1967
PkrI	GCNGC	6 cut(s)	436, 1596, 1635, 1782, 1879, 2038
PleI	GAGTC	2 cut(s)	404, 1481
PpsI	GAGTC	2 cut(s)	404, 1481
PscI	ACATGT	1 cut(s)	519
Psp124BI	GAGCTC	1 cut(s)	1774
Psp6I	CCWGG	1 cut(s)	1033
PspEI	GGTNACC	1 cut(s)	1615
PspFI	CCCAGC	1 cut(s)	920
PspGI	CCWGG	1 cut(s)	1033
PspN4I	GGNNCC	1 cut(s)	1795
PspPI	GGNCC	2 cut(s)	708, 2002
PstI	CTGCAG	1 cut(s)	1702
PstNI	CAGNNNCTG	1 cut(s)	550
PsuI	RGATCY	2 cut(s)	373, 1116
RsaI	GTAC	3 cut(s)	16, 752, 995
RsaNI	GTAC	3 cut(s)	15, 751, 994
RseI	CAYNNNNRTG	2 cut(s)	1319, 1404
SacI	GAGCTC	1 cut(s)	1774
SaqAI	TTAA	4 cut(s)	1113, 1503, 1665, 2137
SatI	GCNGC	6 cut(s)	435, 1595, 1634, 1781, 1878, 2037
Sau3AI	GATC	2 cut(s)	373, 1116
Sau96I	GGNCC	2 cut(s)	708, 2002
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	2 cut(s)	404, 1482
ScrFI	CCNGG	4 cut(s)	296, 1035, 1075, 1815
SduI	GDGCHC	3 cut(s)	1290, 1401, 1774
SfaNI	GCATC	2 cut(s)	756, 1079
SfcI	CTRYAG	2 cut(s)	1291, 1698
SfuI	TTCGAA	1 cut(s)	1056
SinI	GGWCC	1 cut(s)	708
SmiMI	CAYNNNNRTG	2 cut(s)	1319, 1404
SmlI	CTYRAG	3 cut(s)	206, 417, 1992
SmoI	CTYRAG	3 cut(s)	206, 417, 1992
SpeI	ACTAGT	2 cut(s)	11, 17
Sse9I	AATT	9 cut(s)	40, 812, 982, 1154, 1662, 1673, 1726, 1920, 1985
SsiI	CCGC	2 cut(s)	728, 1165
SspMI	CTAG	7 cut(s)	12, 18, 440, 861, 1044, 1140, 1790
SstI	GAGCTC	1 cut(s)	1774
StyD4I	CCNGG	4 cut(s)	294, 1033, 1073, 1813
StyI	CCWWGG	3 cut(s)	503, 1234, 1362
TaaI	ACNGT	4 cut(s)	37, 407, 1292, 1536
TaiI	ACGT	1 cut(s)	1004
TaqI	TCGA	4 cut(s)	720, 1056, 1175, 1471
TasI	AATT	9 cut(s)	40, 812, 982, 1154, 1662, 1673, 1726, 1920, 1985
TatI	WGTACW	3 cut(s)	14, 750, 993
TfiI	GAWTC	4 cut(s)	105, 484, 1177, 1706
Tru1I	TTAA	4 cut(s)	1113, 1503, 1665, 2137
Tru9I	TTAA	4 cut(s)	1113, 1503, 1665, 2137
TscAI	CASTG	7 cut(s)	40, 1187, 1295, 1702, 1891, 1947, 2137
TseFI	GTSAC	5 cut(s)	407, 580, 778, 1860, 2112
TseI	GCWGC	6 cut(s)	434, 1594, 1633, 1780, 1877, 2036
Tsp45I	GTSAC	5 cut(s)	407, 580, 778, 1860, 2112
TspDTI	ATGAA	4 cut(s)	602, 1289, 1575, 1998
TspRI	CASTG	7 cut(s)	40, 1187, 1295, 1702, 1891, 1947, 2137
VneI	GTGCAC	1 cut(s)	1397
VpaK11BI	GGWCC	1 cut(s)	708
XapI	RAATTY	3 cut(s)	40, 1673, 1985
XbaI	TCTAGA	1 cut(s)	439
XceI	RCATGY	1 cut(s)	523
XmiI	GTMKAC	1 cut(s)	125
XspI	CTAG	7 cut(s)	12, 18, 440, 861, 1044, 1140, 1790
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.