Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012456

Physical Location & Seq

Genomic Coordinates Forward (+)

45139680 .. 45141827

Gene Structure 2148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003167

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGGCTACTAGTAGTACTAGTAGCATTCACTTCACTGTGAATTCCTCAGAAACCAAGAGACCCATCTTCTTCACTTCACCAATCAAACTAATCCCACCCAAAAGATTCACCATTTCTTGCAGGTCTACCAAGTCCCCTCCAAAATCTCCACCAGATTTATCACAACCCAATAGCAAGAACACCACCACCAAAACCCCATCTTTGTCTGACCAACTCAAGCCTCTAACCACCACCACTCTCTCCACCCCTCCTCCCAAAGACCAACCCCAAGTCCTATCCAAGCCCAAGTCCATCTGGGTCAACCCGGCCAAGCCCAAACGCTCTGTGCTATCCCTCCAGAGGCAGAAGCGCTCTCTCTACTCCTACAATCCTCAGGTCAGAGATCTCAGGCTCTTTGCCCAGAAGCTCAATGACTGTGACTCCTCTCAAGAAGCTTTCTTGGCTGCTCTAGAAGAAATCCCACACCCACCCACCAGAGAAAATGCCCTTTTGATTCTCAACAGCTTGAAGCCATGGCAGAAAACCCACATGTTCTTCAACTGGGTCAAGTCCCAGAATCTGTTTCCAACGGAGACCATCTTCTACAATGTCACAATGAAGTCCATGAGGTTTGGGAGGCAGTTTCAGCTCATTGAGGAGCTTGCTGAGGAGATGGTAAGCAATGGGGTTGCGCTTGACAACATTACTTACTCCACTATAATCACTTGTGCCAAAAGGTCCAAGCTTTTCGACAAGGCGGTGGAGTGGTTTGAGAGGATGTACAAGACTGGTTTGATGCCTGATGAGGTGACTTACTCCGCTATTTTAGATGTGTATGCCAAATTGGGCAAGGTTGAGGAGGTGCTTAGTTTATATGAGAGAGGGAGAGCTAGTGGGTGGACACCTGACCCTATTGCATTTTCTGTGTTGGGTAAGATGTTTGGTGAGGCTGGGGACTATGATGGTATTAGGTATGTCTTGCAGGAAATGGCTTCTATTGGTGTGAAGCCTAATTTGGTTGTGTACAATACGTTGTTAGAGGCAATGGGGAAGGCTGGAAAGCCTGGTTTAGCTAGGAGTTTGTTCGAAGAAATGGTTGCATCCGGGCTAAAACCAAATGAGAAAACATTGACTGCACTTGTTAAGATCTATGGCAAGGCAAGGTGGGCTAGAGACGCGTTGGAATTGTGGGAGCGGATGAGGTCGAATCAGTGGCCTATGGACTTTATTTTGTATAACACATTGTTGAATATGTGTGCTGACCTTGGCTTGGAGGATGAGGCTAAGAGGCTGTTTGAGGATATGAAGCAGTCGGAGCACTGTAGGCCGGATAGTTATAGTTATACGGCAATGTTGAACATCTTTGGGAGTGGTGGGAATGCTGATGAGGCCATGGAGTTGTTTGAAGAAATGTCCAAAAAGGGTGTGCACCTCAATGTCATGGGTTGCACTTGTTTGATACAATGCTTGGGGAGAGCTAAAAGATTTGGTGATATGGTTCGAGTCTTCAATGTTGCAGTTGAAAGGGGGGTTAAACCAGATGATAGGCTCTGTGGGTGTTTACTGTCTGTTGTGTCATTGTGTGAAAAAACTGAGGATGAGGATATGGTCTTTTCATGCTTGCAGCAGGCTAATCCGAAGTTGGTTACCCTCGTAAAAGTGCTGCAAGATGAGAAAGTAGGGTTTGAGGCAATTAAAGACGAATTCAGGGATGTTATTGGTGGCACTGCAGTTGAATCCAGAAGACCCTTCTGCAATTGCTTGATTGATATATGCAGAAACAAAAATAACCACGAGAGAGCTCATGAGCTGCTCTATCTAGGAACCCTATATGGGCTGTATCCGGGTTTACACAACAAGACAGCGAATGAGTGGTGTTTAGATGTTCGGTCACTATCCATTGGTGCTGCTCACACTGCACTTGAAGAGTGGATGGGAACTCTATACAAAATTGTTCAGCGTGAAGAGGCACTGCCGAAGTTGTTTTCTGCTCAAACCGGTGCTGGAACTCACAAATTCTCTCAAGGACTGGCCCATTCATTTGGTTCTCATGTGAAGAAGTTGGCTGCACCATTTCGGCAGAGTGAAGAGAAAGCTGGTTGTTTTGTGGCAACTAGGGAGGATTTAGTGTCGTGGGTGCAGTCACAGGCACAATCAATCACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

716

Amino Acids

80.42

Weight (kDa)

8.56

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	179 - 305	3.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	214 - 273	8.4e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	232 - 274	5.1e-07	PPR repeat family
PPR_long	PF17177	279 - 377	2.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	327 - 359	3.5e-06	PPR repeat
PPR_2	PF13041	330 - 375	3.3e-11	PPR repeat family
PPR_long	PF17177	383 - 538	1.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	403 - 446	3.2e-09	PPR repeat family
PPR_1	PF12854	433 - 465	1.3e-06	PPR repeat
PPR_2	PF13041	436 - 473	5.2e-07	PPR repeat family
PPR	PF01535	439 - 469	2.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46580
fragaria_vesca	FvH4_5g21640
malus_domestica	MD06G1031400.v1.1 MD16G1277300.v1.1
prunus_persica	Prupe.5G040700_v2.0.a1
pyrus_communis	pycom06g02620 pycom16g24660
rosa_chinensis	RchiOBHm_Chr7g0209101
rosa_laevigata	RLG00000003167
rosa_multiflora	Rmu_co8470613.1_g000001 Rmu_sc0000821.1_g000010 Rmu_sc0009521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249750
rosa_rugosa	Rorug07G0109100
rosa_samantha	Rh7AG243500 Rh7BG238600 Rh7CG258700 Rh7DG250500
rosa_wichuraiana	Rw7G020640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	111
AccBSI	CCGCTC	1 cut(s)	1174
AccI	GTMKAC	1 cut(s)	125
AccII	CGCG	1 cut(s)	1157
AciI	CCGC	3 cut(s)	737, 798, 1174
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	3 cut(s)	40, 1682, 1994
AfaI	GTAC	3 cut(s)	16, 761, 1004
AfeI	AGCGCT	1 cut(s)	350
AfiI	CCNNNNNNNGG	3 cut(s)	339, 1249, 1812
AflIII	ACRYGT	2 cut(s)	528, 1155
AgeI	ACCGGT	1 cut(s)	1976
AgsI	TTSAA	9 cut(s)	508, 538, 1228, 1336, 1385, 1489, 1502, 1715, 1904
AhlI	ACTAGT	2 cut(s)	8, 17
AjnI	CCWGG	1 cut(s)	1042
AjuI	GAANNNNNNNTTGG	2 cut(s)	977, 1009
Alw21I	GWGCWC	3 cut(s)	1299, 1410, 1783
Alw26I	GTCTC	3 cut(s)	52, 566, 1146
Alw44I	GTGCAC	1 cut(s)	1406
AlwNI	CAGNNNCTG	1 cut(s)	559
Aor51HI	AGCGCT	1 cut(s)	350
AoxI	GGCC	5 cut(s)	306, 1193, 1304, 1368, 2010
ApaLI	GTGCAC	1 cut(s)	1406
ApeKI	GCWGC	6 cut(s)	443, 1603, 1642, 1789, 1886, 2045
ApoI	RAATTY	3 cut(s)	40, 1682, 1994
AsiGI	ACCGGT	1 cut(s)	1976
AspLEI	GCGC	2 cut(s)	351, 673
AspS9I	GGNCC	2 cut(s)	717, 2011
AsuC2I	CCSGG	3 cut(s)	305, 1084, 1824
AsuHPI	GGTGA	5 cut(s)	69, 100, 799, 935, 1481
AsuII	TTCGAA	1 cut(s)	1065
AvaII	GGWCC	1 cut(s)	717
AxyI	CCTNAGG	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	1410
BanII	GRGCYC	1 cut(s)	1783
BauI	CACGAG	1 cut(s)	1772
BbsI	GAAGAC	2 cut(s)	1477, 1729
Bbv12I	GWGCWC	3 cut(s)	1299, 1410, 1783
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	6 cut(s)	430, 1615, 1629, 1776, 1873, 2032
BccI	CCATC	7 cut(s)	71, 205, 299, 584, 646, 935, 1906
BceAI	ACGGC	1 cut(s)	1341
BciT130I	CCWGG	1 cut(s)	1044
BciVI	GTATCC	1 cut(s)	1830
BcnI	CCSGG	3 cut(s)	305, 1084, 1824
BcoDI	GTCTC	3 cut(s)	52, 566, 1146
BcuI	ACTAGT	2 cut(s)	8, 17
BfaI	CTAG	8 cut(s)	9, 18, 449, 870, 1053, 1149, 1799, 2094
BfmI	CTRYAG	2 cut(s)	1300, 1707
BfoI	RGCGCY	1 cut(s)	352
BfuAI	ACCTGC	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	1830
BglII	AGATCT	2 cut(s)	382, 1125
BisI	GCNGC	6 cut(s)	444, 1604, 1643, 1790, 1887, 2046
BlsI	GCNGC	6 cut(s)	445, 1605, 1644, 1791, 1888, 2047
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	4 cut(s)	305, 1044, 1084, 1824
Bme18I	GGWCC	1 cut(s)	717
BmgT120I	GGNCC	2 cut(s)	717, 2011
BmiI	GGNNCC	1 cut(s)	1804
BmrFI	CCNGG	4 cut(s)	305, 1044, 1084, 1824
BmrI	ACTGGG	1 cut(s)	550
BmsI	GCATC	2 cut(s)	765, 1088
BmuI	ACTGGG	1 cut(s)	550
BpiI	GAAGAC	2 cut(s)	1477, 1729
BpmI	CTGGAG	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	645
Bpu14I	TTCGAA	1 cut(s)	1065
BpuEI	CTTGAG	3 cut(s)	200, 411, 1986
BpuMI	CCSGG	3 cut(s)	305, 1084, 1824
BsaI	GGTCTC	2 cut(s)	52, 566
BsaJI	CCNNGG	3 cut(s)	512, 1243, 1371
BsaWI	WCCGGW	1 cut(s)	1976
BsaXI	ACNNNNNCTCC	6 cut(s)	235, 265, 404, 434, 856, 886
Bsc4I	CCNNNNNNNGG	3 cut(s)	339, 1249, 1812
Bse118I	RCCGGY	1 cut(s)	1976
Bse1I	ACTGG	3 cut(s)	545, 772, 2013
Bse21I	CCTNAGG	1 cut(s)	372
Bse3DI	GCAATG	3 cut(s)	667, 1029, 1335
BseBI	CCWGG	1 cut(s)	1044
BseDI	CCNNGG	3 cut(s)	512, 1243, 1371
BseGI	GGATG	7 cut(s)	762, 1079, 1182, 1261, 1582, 1696, 1917
BseLI	CCNNNNNNNGG	3 cut(s)	339, 1249, 1812
BseMI	GCAATG	3 cut(s)	667, 1029, 1335
BseMII	CTCAG	5 cut(s)	60, 386, 400, 636, 1563
BseNI	ACTGG	3 cut(s)	545, 772, 2013
BseRI	GAGGAG	5 cut(s)	240, 412, 650, 662, 851
BseSI	GKGCMC	1 cut(s)	1410
BseXI	GCAGC	6 cut(s)	430, 1615, 1629, 1776, 1873, 2032
BseYI	CCCAGC	1 cut(s)	929
BsgI	GTGCAG	4 cut(s)	1098, 1881, 2031, 2138
Bsh1236I	CGCG	1 cut(s)	1157
BshFI	GGCC	5 cut(s)	308, 1195, 1306, 1370, 2012
BshTI	ACCGGT	1 cut(s)	1976
BsiHKAI	GWGCWC	3 cut(s)	1299, 1410, 1783
BsiSI	CCGG	5 cut(s)	305, 1083, 1307, 1823, 1977
BslFI	GGGAC	3 cut(s)	118, 535, 947
BslI	CCNNNNNNNGG	3 cut(s)	339, 1249, 1812
BsmAI	GTCTC	3 cut(s)	52, 566, 1146
BsmBI	CGTCTC	1 cut(s)	1146
BsmFI	GGGAC	3 cut(s)	118, 535, 947
BsmI	GAATGC	2 cut(s)	24, 1363
BsnI	GGCC	5 cut(s)	308, 1195, 1306, 1370, 2012
Bso31I	GGTCTC	2 cut(s)	52, 566
Bsp119I	TTCGAA	1 cut(s)	1065
Bsp1286I	GDGCHC	3 cut(s)	1299, 1410, 1783
Bsp1407I	TGTACA	2 cut(s)	759, 1002
Bsp143I	GATC	2 cut(s)	382, 1125
Bsp19I	CCATGG	2 cut(s)	512, 1371
BspACI	CCGC	3 cut(s)	737, 798, 1174
BspANI	GGCC	5 cut(s)	308, 1195, 1306, 1370, 2012
BspCNI	CTCAG	5 cut(s)	59, 385, 399, 637, 1564
BspFNI	CGCG	1 cut(s)	1157
BspHI	TCATGA	1 cut(s)	1783
BspLI	GGNNCC	1 cut(s)	1804
BspMAI	CTGCAG	1 cut(s)	1711
BspMI	ACCTGC	1 cut(s)	111
BspT104I	TTCGAA	1 cut(s)	1065
BspTNI	GGTCTC	2 cut(s)	52, 566
BsrBI	CCGCTC	1 cut(s)	1174
BsrDI	GCAATG	3 cut(s)	667, 1029, 1335
BsrFI	RCCGGY	1 cut(s)	1976
BsrGI	TGTACA	2 cut(s)	759, 1002
BsrI	ACTGG	3 cut(s)	545, 772, 2013
BssAI	RCCGGY	1 cut(s)	1976
BssECI	CCNNGG	3 cut(s)	512, 1243, 1371
BssMI	GATC	2 cut(s)	382, 1125
BssSI	CACGAG	1 cut(s)	1772
BssT1I	CCWWGG	3 cut(s)	512, 1243, 1371
Bst2BI	CACGAG	1 cut(s)	1772
Bst2UI	CCWGG	1 cut(s)	1044
Bst4CI	ACNGT	4 cut(s)	37, 416, 1301, 1545
Bst6I	CTCTTC	3 cut(s)	1899, 1938, 2061
BstAUI	TGTACA	2 cut(s)	759, 1002
BstBI	TTCGAA	1 cut(s)	1065
BstC8I	GCNNGC	3 cut(s)	642, 1601, 1608
BstDEI	CTNAG	7 cut(s)	46, 372, 386, 645, 845, 1263, 1572
BstDSI	CCRYGG	2 cut(s)	512, 1371
BstEII	GGTNACC	1 cut(s)	1624
BstF5I	GGATG	7 cut(s)	762, 1079, 1182, 1261, 1582, 1696, 1917
BstFNI	CGCG	1 cut(s)	1157
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	2 cut(s)	351, 673
BstKTI	GATC	2 cut(s)	385, 1128
BstMAI	GTCTC	3 cut(s)	52, 566, 1146
BstMBI	GATC	2 cut(s)	382, 1125
BstMWI	GCNNNNNNNGC	8 cut(s)	440, 625, 1145, 1154, 1294, 1303, 1367, 1895
BstNI	CCWGG	1 cut(s)	1044
BstNSI	RCATGY	1 cut(s)	532
BstPI	GGTNACC	1 cut(s)	1624
BstSCI	CCNGG	4 cut(s)	303, 1042, 1082, 1822
BstSFI	CTRYAG	2 cut(s)	1300, 1707
BstSLI	GKGCMC	1 cut(s)	1410
BstUI	CGCG	1 cut(s)	1157
BstV1I	GCAGC	6 cut(s)	430, 1615, 1629, 1776, 1873, 2032
BstV2I	GAAGAC	2 cut(s)	1477, 1729
BstX2I	RGATCY	2 cut(s)	382, 1125
BstXI	CCANNNNNNTGG	1 cut(s)	2021
BstYI	RGATCY	2 cut(s)	382, 1125
Bsu36I	CCTNAGG	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	1830
BsuRI	GGCC	5 cut(s)	308, 1195, 1306, 1370, 2012
BtgI	CCRYGG	2 cut(s)	512, 1371
BtsCI	GGATG	7 cut(s)	762, 1079, 1182, 1261, 1582, 1696, 1917
BtsI	GCAGTG	4 cut(s)	1704, 1893, 1949, 2139
BtsIMutI	CAGTG	7 cut(s)	33, 1196, 1297, 1704, 1893, 1949, 2139
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	642, 1601, 1608
CaiI	CAGNNNCTG	1 cut(s)	559
CciI	TCATGA	1 cut(s)	1783
CfoI	GCGC	2 cut(s)	351, 673
Cfr10I	RCCGGY	1 cut(s)	1976
Cfr13I	GGNCC	2 cut(s)	717, 2011
CseI	GACGC	1 cut(s)	1163
Csp6I	GTAC	3 cut(s)	15, 760, 1003
CspAI	ACCGGT	1 cut(s)	1976
CviAII	CATG	8 cut(s)	513, 529, 604, 1372, 1420, 1596, 1784, 2030
CviQI	GTAC	3 cut(s)	15, 760, 1003
DdeI	CTNAG	7 cut(s)	46, 372, 386, 645, 845, 1263, 1572
DpnI	GATC	2 cut(s)	384, 1127
DpnII	GATC	2 cut(s)	382, 1125
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	3 cut(s)	1899, 1938, 2061
EarI	CTCTTC	3 cut(s)	1899, 1938, 2061
Ecl136II	GAGCTC	1 cut(s)	1781
Eco130I	CCWWGG	3 cut(s)	512, 1243, 1371
Eco24I	GRGCYC	1 cut(s)	1783
Eco31I	GGTCTC	2 cut(s)	52, 566
Eco47I	GGWCC	1 cut(s)	717
Eco47III	AGCGCT	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	1781
Eco81I	CCTNAGG	1 cut(s)	372
Eco91I	GGTNACC	1 cut(s)	1624
EcoICRI	GAGCTC	1 cut(s)	1781
EcoO65I	GGTNACC	1 cut(s)	1624
EcoRI	GAATTC	2 cut(s)	40, 1682
EcoRII	CCWGG	1 cut(s)	1042
EcoT14I	CCWWGG	3 cut(s)	512, 1243, 1371
EcoT38I	GRGCYC	1 cut(s)	1783
ErhI	CCWWGG	3 cut(s)	512, 1243, 1371
Esp3I	CGTCTC	1 cut(s)	1146
FaeI	CATG	8 cut(s)	516, 532, 607, 1375, 1423, 1599, 1787, 2033
FaqI	GGGAC	3 cut(s)	118, 535, 947
FatI	CATG	8 cut(s)	512, 528, 603, 1371, 1419, 1595, 1783, 2029
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	6 cut(s)	444, 1604, 1643, 1790, 1887, 2046
FokI	GGATG	7 cut(s)	769, 1066, 1189, 1268, 1589, 1703, 1924
FriOI	GRGCYC	1 cut(s)	1783
Fsp4HI	GCNGC	6 cut(s)	444, 1604, 1643, 1790, 1887, 2046
FspBI	CTAG	8 cut(s)	9, 18, 449, 870, 1053, 1149, 1799, 2094
GlaI	GCGC	2 cut(s)	350, 672
GluI	GCNGC	6 cut(s)	444, 1604, 1643, 1790, 1887, 2046
GsaI	CCCAGC	1 cut(s)	933
GsuI	CTGGAG	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	5 cut(s)	308, 1195, 1306, 1370, 2012
HapII	CCGG	5 cut(s)	305, 1083, 1307, 1823, 1977
HgaI	GACGC	1 cut(s)	1163
HhaI	GCGC	2 cut(s)	351, 673
Hin1II	CATG	8 cut(s)	516, 532, 607, 1375, 1423, 1599, 1787, 2033
Hin6I	GCGC	2 cut(s)	349, 671
HinP1I	GCGC	2 cut(s)	349, 671
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	2 cut(s)	432, 722
HinfI	GANTC	7 cut(s)	105, 419, 493, 556, 1186, 1482, 1715
HpaII	CCGG	5 cut(s)	305, 1083, 1307, 1823, 1977
HphI	GGTGA	5 cut(s)	69, 100, 799, 935, 1481
Hpy166II	GTNNAC	7 cut(s)	126, 301, 879, 1003, 1408, 1541, 1829
Hpy188I	TCNGA	5 cut(s)	49, 208, 380, 1294, 1617
Hpy188III	TCNNGA	5 cut(s)	337, 428, 449, 1719, 1784
Hpy8I	GTNNAC	7 cut(s)	126, 301, 879, 1003, 1408, 1541, 1829
HpyAV	CCTTC	2 cut(s)	1024, 1738
HpyCH4III	ACNGT	4 cut(s)	37, 416, 1301, 1545
HpyCH4IV	ACGT	1 cut(s)	1010
HpyF10VI	GCNNNNNNNGC	8 cut(s)	440, 625, 1145, 1154, 1294, 1303, 1367, 1895
HpyF3I	CTNAG	7 cut(s)	46, 372, 386, 645, 845, 1263, 1572
HpySE526I	ACGT	1 cut(s)	1010
Hsp92II	CATG	8 cut(s)	516, 532, 607, 1375, 1423, 1599, 1787, 2033
HspAI	GCGC	2 cut(s)	349, 671
Kzo9I	GATC	2 cut(s)	382, 1125
LmnI	GCTCC	3 cut(s)	637, 1171, 1294
Lsp1109I	GCAGC	6 cut(s)	430, 1615, 1629, 1776, 1873, 2032
LweI	GCATC	2 cut(s)	765, 1088
MaeI	CTAG	8 cut(s)	9, 18, 449, 870, 1053, 1149, 1799, 2094
MaeII	ACGT	1 cut(s)	1010
MaeIII	GTNAC	6 cut(s)	416, 589, 787, 1624, 1869, 2121
MalI	GATC	2 cut(s)	384, 1127
MbiI	CCGCTC	1 cut(s)	1174
MboI	GATC	2 cut(s)	382, 1125
MfeI	CAATTG	1 cut(s)	1735
MflI	RGATCY	2 cut(s)	382, 1125
MhlI	GDGCHC	3 cut(s)	1299, 1410, 1783
MluCI	AATT	9 cut(s)	40, 821, 991, 1163, 1671, 1682, 1735, 1929, 1994
MluI	ACGCGT	1 cut(s)	1155
MlyI	GAGTC	2 cut(s)	413, 1491
MmeI	TCCRAC	3 cut(s)	590, 1140, 1272
MseI	TTAA	4 cut(s)	1122, 1512, 1674, 2146
MslI	CAYNNNNRTG	1 cut(s)	1413
MspI	CCGG	5 cut(s)	305, 1083, 1307, 1823, 1977
MspR9I	CCNGG	4 cut(s)	305, 1044, 1084, 1824
MunI	CAATTG	1 cut(s)	1735
Mva1269I	GAATGC	2 cut(s)	24, 1363
MvaI	CCWGG	1 cut(s)	1044
MvnI	CGCG	1 cut(s)	1157
MwoI	GCNNNNNNNGC	8 cut(s)	440, 625, 1145, 1154, 1294, 1303, 1367, 1895
NciI	CCSGG	3 cut(s)	305, 1084, 1824
NcoI	CCATGG	2 cut(s)	512, 1371
NdeII	GATC	2 cut(s)	382, 1125
NlaIII	CATG	8 cut(s)	516, 532, 607, 1375, 1423, 1599, 1787, 2033
NlaIV	GGNNCC	1 cut(s)	1804
NmuCI	GTSAC	5 cut(s)	416, 589, 787, 1869, 2121
NspI	RCATGY	1 cut(s)	532
NspV	TTCGAA	1 cut(s)	1065
PagI	TCATGA	1 cut(s)	1783
PciI	ACATGT	1 cut(s)	528
PctI	GAATGC	2 cut(s)	24, 1363
PfeI	GAWTC	5 cut(s)	105, 493, 556, 1186, 1715
PinAI	ACCGGT	1 cut(s)	1976
PkrI	GCNGC	6 cut(s)	445, 1605, 1644, 1791, 1888, 2047
PleI	GAGTC	2 cut(s)	413, 1490
PpsI	GAGTC	2 cut(s)	413, 1490
PscI	ACATGT	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	1783
Psp6I	CCWGG	1 cut(s)	1042
PspEI	GGTNACC	1 cut(s)	1624
PspFI	CCCAGC	1 cut(s)	929
PspGI	CCWGG	1 cut(s)	1042
PspN4I	GGNNCC	1 cut(s)	1804
PspPI	GGNCC	2 cut(s)	717, 2011
PstI	CTGCAG	1 cut(s)	1711
PstNI	CAGNNNCTG	1 cut(s)	559
PsuI	RGATCY	2 cut(s)	382, 1125
RsaI	GTAC	3 cut(s)	16, 761, 1004
RsaNI	GTAC	3 cut(s)	15, 760, 1003
RseI	CAYNNNNRTG	1 cut(s)	1413
SacI	GAGCTC	1 cut(s)	1783
SaqAI	TTAA	4 cut(s)	1122, 1512, 1674, 2146
SatI	GCNGC	6 cut(s)	444, 1604, 1643, 1790, 1887, 2046
Sau3AI	GATC	2 cut(s)	382, 1125
Sau96I	GGNCC	2 cut(s)	717, 2011
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	2 cut(s)	413, 1491
ScrFI	CCNGG	4 cut(s)	305, 1044, 1084, 1824
SduI	GDGCHC	3 cut(s)	1299, 1410, 1783
SfaNI	GCATC	2 cut(s)	765, 1088
SfcI	CTRYAG	2 cut(s)	1300, 1707
SfuI	TTCGAA	1 cut(s)	1065
SinI	GGWCC	1 cut(s)	717
SmiMI	CAYNNNNRTG	1 cut(s)	1413
SmlI	CTYRAG	3 cut(s)	215, 426, 2001
SmoI	CTYRAG	3 cut(s)	215, 426, 2001
SpeI	ACTAGT	2 cut(s)	8, 17
Sse9I	AATT	9 cut(s)	40, 821, 991, 1163, 1671, 1682, 1735, 1929, 1994
SsiI	CCGC	3 cut(s)	737, 798, 1174
SspMI	CTAG	8 cut(s)	9, 18, 449, 870, 1053, 1149, 1799, 2094
SstI	GAGCTC	1 cut(s)	1783
StyD4I	CCNGG	4 cut(s)	303, 1042, 1082, 1822
StyI	CCWWGG	3 cut(s)	512, 1243, 1371
TaaI	ACNGT	4 cut(s)	37, 416, 1301, 1545
TaiI	ACGT	1 cut(s)	1013
TaqI	TCGA	4 cut(s)	729, 1065, 1184, 1480
TaqII	GACCGA	1 cut(s)	1857
TasI	AATT	9 cut(s)	40, 821, 991, 1163, 1671, 1682, 1735, 1929, 1994
TatI	WGTACW	3 cut(s)	14, 759, 1002
TfiI	GAWTC	5 cut(s)	105, 493, 556, 1186, 1715
Tru1I	TTAA	4 cut(s)	1122, 1512, 1674, 2146
Tru9I	TTAA	4 cut(s)	1122, 1512, 1674, 2146
TscAI	CASTG	7 cut(s)	40, 1196, 1304, 1711, 1900, 1956, 2146
TseFI	GTSAC	5 cut(s)	416, 589, 787, 1869, 2121
TseI	GCWGC	6 cut(s)	443, 1603, 1642, 1789, 1886, 2045
Tsp45I	GTSAC	5 cut(s)	416, 589, 787, 1869, 2121
TspDTI	ATGAA	4 cut(s)	611, 1298, 1584, 2007
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	7 cut(s)	40, 1196, 1304, 1711, 1900, 1956, 2146
VneI	GTGCAC	1 cut(s)	1406
VpaK11BI	GGWCC	1 cut(s)	717
XapI	RAATTY	3 cut(s)	40, 1682, 1994
XbaI	TCTAGA	1 cut(s)	448
XceI	RCATGY	1 cut(s)	532
XmiI	GTMKAC	1 cut(s)	125
XspI	CTAG	8 cut(s)	9, 18, 449, 870, 1053, 1149, 1799, 2094
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.