Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012456

Physical Location & Seq

Genomic Coordinates Reverse (-)

21097969 .. 21098787

Gene Structure 819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG238600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTTGAACATCTTTGGGAGTGGAGGGAATGCTGATGAGGCCATGGAGTTGTTTGAAGAAATGTCCAAGAAGGGTGTGCACCTCAATGTCATGGGTTGCACTTGTTTGATACAATGCTTGGGGAGAGCTAAAAGATTTGGTGATATGGTTCGAGTCTTCAATGTTGCAGTTGAAAGAGGGGTTAAACCAGATGATAGGCTCTGTGGGTGTTTACTGTCTGTTGTGTCATTGTGTGAAAAAACTGAGGATGAGGATATGGTCTTTTCATGCTTGCAGCAGGCTAATCCGAAGTTGGTTACCCTTGTAAAAGTGCTGCAAGATGAGAAAGTAGGGTTTGAGGCAATTAAAGACGAATTCAGGGATGTTATTGGTAGCACTGCAGTTGAATCCAGAAGACCCTTCTGCAATTGCTTGATTGATATATGCAGAAACAAAAATAACCACGAGAGAGCTCATGAGCTGCTCTATCTAGGAACCCTATATGGGCTGTATCCGGGTTTACACAACAAGACAGCGAATGAGTGGTGTTTAGATGTTAGGTCACTATCCATTGGTGCTGCTCACACTGCACTTGAAGAGTGGATGGGAACTCTATACAAAATTGTTCAGCGTGAAGAGGCGCTGCCGAAGTTGTTTTCTGCTCAAACCGGTGCTGGAACTCACAAATTCTCTCAAGGACTAGCCCATTCATTTGGTTCTCATGTGAAGAAGTTGGCTGCACCATTTCGGCAGAGTGAAGAGAAAGCTGGTTGTTTTGTGGCAACTAGGGAGGATTTAGTGTCGTGGGTGCAGTCACAGGCACAATCAATCACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

272

Amino Acids

30.17

Weight (kDa)

6.26

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46580
fragaria_vesca	FvH4_5g21640
malus_domestica	MD06G1031400.v1.1 MD16G1277300.v1.1
prunus_persica	Prupe.5G040700_v2.0.a1
pyrus_communis	pycom06g02620 pycom16g24660
rosa_chinensis	RchiOBHm_Chr7g0209101
rosa_laevigata	RLG00000003167
rosa_multiflora	Rmu_co8470613.1_g000001 Rmu_sc0000821.1_g000010 Rmu_sc0009521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249750
rosa_rugosa	Rorug07G0109100
rosa_samantha	Rh7AG243500 Rh7BG238600 Rh7CG258700 Rh7DG250500
rosa_wichuraiana	Rw7G020640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	353, 665
AfiI	CCNNNNNNNGG	1 cut(s)	483
AgeI	ACCGGT	1 cut(s)	647
AgsI	TTSAA	6 cut(s)	7, 56, 160, 173, 386, 575
AluBI	AGCT	4 cut(s)	128, 452, 460, 746
AluI	AGCT	4 cut(s)	128, 452, 460, 746
Alw21I	GWGCWC	2 cut(s)	81, 454
Alw44I	GTGCAC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	39
ApaLI	GTGCAC	1 cut(s)	77
ApeKI	GCWGC	6 cut(s)	274, 313, 460, 557, 622, 716
ApoI	RAATTY	2 cut(s)	353, 665
AsiGI	ACCGGT	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	622
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	454
BauI	CACGAG	1 cut(s)	443
BbsI	GAAGAC	2 cut(s)	148, 400
Bbv12I	GWGCWC	2 cut(s)	81, 454
BbvI	GCAGC	6 cut(s)	286, 300, 447, 544, 609, 703
BccI	CCATC	1 cut(s)	577
BciVI	GTATCC	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	495
BfaI	CTAG	3 cut(s)	470, 680, 765
BfmI	CTRYAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	623
BfuI	GTATCC	1 cut(s)	501
BisI	GCNGC	6 cut(s)	275, 314, 461, 558, 623, 717
BlsI	GCNGC	6 cut(s)	276, 315, 462, 559, 624, 718
Bme1390I	CCNGG	1 cut(s)	495
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	1 cut(s)	495
BpiI	GAAGAC	2 cut(s)	148, 400
BpuEI	CTTGAG	1 cut(s)	657
BpuMI	CCSGG	1 cut(s)	495
BsaJI	CCNNGG	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	647
Bsc4I	CCNNNNNNNGG	1 cut(s)	483
Bse118I	RCCGGY	1 cut(s)	647
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	3 cut(s)	253, 367, 588
BseLI	CCNNNNNNNGG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	234
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	6 cut(s)	286, 300, 447, 544, 609, 703
BsgI	GTGCAG	3 cut(s)	552, 702, 809
BshFI	GGCC	1 cut(s)	41
BshTI	ACCGGT	1 cut(s)	647
BsiHKAI	GWGCWC	2 cut(s)	81, 454
BsiSI	CCGG	2 cut(s)	494, 648
BslI	CCNNNNNNNGG	1 cut(s)	483
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	81, 454
Bsp19I	CCATGG	1 cut(s)	42
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	475
BspMAI	CTGCAG	1 cut(s)	382
BsrFI	RCCGGY	1 cut(s)	647
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	443
BssT1I	CCWWGG	1 cut(s)	42
Bst2BI	CACGAG	1 cut(s)	443
Bst4CI	ACNGT	1 cut(s)	216
Bst6I	CTCTTC	3 cut(s)	570, 609, 732
BstC8I	GCNNGC	2 cut(s)	272, 279
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	42
BstEII	GGTNACC	1 cut(s)	295
BstF5I	GGATG	3 cut(s)	253, 367, 588
BstH2I	RGCGCY	1 cut(s)	623
BstHHI	GCGC	1 cut(s)	622
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 566
BstPI	GGTNACC	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	493
BstSFI	CTRYAG	1 cut(s)	378
BstSLI	GKGCMC	1 cut(s)	81
BstV1I	GCAGC	6 cut(s)	286, 300, 447, 544, 609, 703
BstV2I	GAAGAC	2 cut(s)	148, 400
BstXI	CCANNNNNNTGG	1 cut(s)	692
BsuI	GTATCC	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	253, 367, 588
BtsI	GCAGTG	3 cut(s)	375, 564, 810
BtsIMutI	CAGTG	3 cut(s)	375, 564, 810
Cac8I	GCNNGC	2 cut(s)	272, 279
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	1 cut(s)	622
Cfr10I	RCCGGY	1 cut(s)	647
CspAI	ACCGGT	1 cut(s)	647
CviAII	CATG	5 cut(s)	43, 91, 267, 455, 701
DdeI	CTNAG	1 cut(s)	243
Eam1104I	CTCTTC	3 cut(s)	570, 609, 732
EarI	CTCTTC	3 cut(s)	570, 609, 732
Ecl136II	GAGCTC	1 cut(s)	452
Eco130I	CCWWGG	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	454
Eco53kI	GAGCTC	1 cut(s)	452
Eco91I	GGTNACC	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	452
EcoO65I	GGTNACC	1 cut(s)	295
EcoRI	GAATTC	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	5 cut(s)	46, 94, 270, 458, 704
FatI	CATG	5 cut(s)	42, 90, 266, 454, 700
Fnu4HI	GCNGC	6 cut(s)	275, 314, 461, 558, 623, 717
FokI	GGATG	3 cut(s)	260, 374, 595
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	6 cut(s)	275, 314, 461, 558, 623, 717
FspBI	CTAG	3 cut(s)	470, 680, 765
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	6 cut(s)	275, 314, 461, 558, 623, 717
HaeII	RGCGCY	1 cut(s)	623
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	2 cut(s)	494, 648
HhaI	GCGC	1 cut(s)	622
Hin1II	CATG	5 cut(s)	46, 94, 270, 458, 704
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HinfI	GANTC	2 cut(s)	153, 386
HpaII	CCGG	2 cut(s)	494, 648
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	3 cut(s)	79, 212, 500
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	2 cut(s)	390, 455
Hpy8I	GTNNAC	3 cut(s)	79, 212, 500
HpyAV	CCTTC	2 cut(s)	64, 409
HpyCH4III	ACNGT	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 566
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	5 cut(s)	46, 94, 270, 458, 704
HspAI	GCGC	1 cut(s)	620
LpnPI	CCDG	9 cut(s)	201, 263, 343, 403, 507, 639, 661, 732, 782
Lsp1109I	GCAGC	6 cut(s)	286, 300, 447, 544, 609, 703
MaeI	CTAG	3 cut(s)	470, 680, 765
MaeIII	GTNAC	3 cut(s)	295, 540, 792
MboII	GAAGA	7 cut(s)	68, 148, 405, 587, 626, 718, 749
MfeI	CAATTG	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	81, 454
MluCI	AATT	5 cut(s)	342, 353, 406, 600, 665
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	9 cut(s)	17, 31, 92, 170, 238, 244, 331, 610, 763
MseI	TTAA	3 cut(s)	183, 345, 817
MslI	CAYNNNNRTG	1 cut(s)	84
MspI	CCGG	2 cut(s)	494, 648
MspR9I	CCNGG	1 cut(s)	495
MunI	CAATTG	1 cut(s)	406
Mva1269I	GAATGC	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	38, 566
NciI	CCSGG	1 cut(s)	495
NcoI	CCATGG	1 cut(s)	42
NlaIII	CATG	5 cut(s)	46, 94, 270, 458, 704
NlaIV	GGNNCC	1 cut(s)	475
NmuCI	GTSAC	2 cut(s)	540, 792
PagI	TCATGA	1 cut(s)	454
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	386
PinAI	ACCGGT	1 cut(s)	647
PkrI	GCNGC	6 cut(s)	276, 315, 462, 559, 624, 718
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp124BI	GAGCTC	1 cut(s)	454
PspEI	GGTNACC	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	475
PstI	CTGCAG	1 cut(s)	382
RseI	CAYNNNNRTG	1 cut(s)	84
SacI	GAGCTC	1 cut(s)	454
SaqAI	TTAA	3 cut(s)	183, 345, 817
SatI	GCNGC	6 cut(s)	275, 314, 461, 558, 623, 717
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	495
SduI	GDGCHC	2 cut(s)	81, 454
SetI	ASST	6 cut(s)	84, 130, 454, 462, 542, 748
SfcI	CTRYAG	1 cut(s)	378
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	672
SmoI	CTYRAG	1 cut(s)	672
Sse9I	AATT	5 cut(s)	342, 353, 406, 600, 665
SspMI	CTAG	3 cut(s)	470, 680, 765
SstI	GAGCTC	1 cut(s)	454
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	151
TasI	AATT	5 cut(s)	342, 353, 406, 600, 665
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	3 cut(s)	183, 345, 817
Tru9I	TTAA	3 cut(s)	183, 345, 817
TscAI	CASTG	3 cut(s)	382, 571, 817
TseFI	GTSAC	2 cut(s)	540, 792
TseI	GCWGC	6 cut(s)	274, 313, 460, 557, 622, 716
Tsp45I	GTSAC	2 cut(s)	540, 792
TspDTI	ATGAA	2 cut(s)	255, 678
TspRI	CASTG	3 cut(s)	382, 571, 817
VneI	GTGCAC	1 cut(s)	77
XapI	RAATTY	2 cut(s)	353, 665
XspI	CTAG	3 cut(s)	470, 680, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.