Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0012456

Physical Location & Seq

Genomic Coordinates Reverse (-)

25966438 .. 25968697

Gene Structure 2260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG250500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2154 bp

ATGGCTACTACTAGTACTAGTAGCATTCACTTCACTGTGAATTCCTCAGAAACCAAGAGACCCATCTTCTTCACTTCACCAATCAAACTAATCCCACCCAAAAGATTCACCATTTCTTGCAGGTCTACCAAGTCCCCTCCAAAATCTCCACCAGATTTATCACAACCCAATAACAAGAACAACACCACCACCACCAAAACCCCATCTTTGTCTGACCAACTCAAGCCTCTAACCACCACCACTCTCTCCACCCCTCCTCCCAAAGACCAACCCCAAGTCCTATCCAAGCCCAAGTCCATCTGGGTCAACCCGGCCAAGCCCAAACGCTCTGTGCTATCCCTCCAGAGGCAGAAGCGCTCTCTCTACTCCTACAATCCTCAGGTCAGAGATCTCAGACTCTTTGCCCAGAAGCTCAATGACTGTGACTCCTCTCAAGAAGCATTCTTGGCTGCTCTAGAAGAAATCCCACACCCACCCACCAGAGAAAATGCCCTTTTGATTCTCAACAGCTTGAAGCCATGGCAGAAAACCCACATGTTCTTCAACTGGATCAAGTCCCAGAACCTGTTTCCAATGGAGACCATCTTCTACAATGTCACCATGAAGTCCATGAGGTTTGGGAGGCAGTTTCAGCTCATCGAGGAGCTTGCTGAGGAGATGATAAGCAATGGGGTTGCGCTTGACAACATTACTTACTCCACTATAATCACTTGTGCCAAAAGGTCCAAGCTTTTCGACAAGGCGGTGGAGTGGTTTGAGAGGATGTACAAGACTGGTTTGATGCCTGATGAGGTGACTTACTCTGCTATTTTAGATGTTTATGCCAAATTGGGCAAGGTTGAGGAGGTGCTTAGTTTATATGAGAGAGGGAGGGCTAGTGGGTGGACACCTGACCCTATTGCATTTTCTGTGTTGGGTAAGATGTTTGGTGAGGCTGGGGACTATGATGGTATTAGGTATGTCTTGCAGGAAATGGCTTCTATTGGTGTGAAGCCTAATTTGGTCGTGTACAATACGTTGTTAGAGGCAATGGGGAAGGCTGGAAAGCCTGGTTTAGCTAGGAGTTTGTTCGAAGAAATGGTTGCATCCGGGCTAAAACCAAATGAGAAAACATTGACTGCACTTGTTAAGATCTATGGCAAGGCGAGGTGGGCTAGAGACGCGTTGGAATTGTGGGAGCGGATGAGGTCGAATCAGTGGCCTATGGACTTTATTTTGTATAACACGTTGTTGAATATGTGTGCTGACCTTGGCTTGGAGGATGAGGCTAAGAGGCTTTTCGAGGATATGAAGCAGTCAGAGCACTGTAGGCCGGATAGTTATAGTTATACGGCAATGTTGAACATCTTTGGGAGTGGTGGGAATGCTGATGAGGCCATGGAGTTGTTTGAAGAAATGTCCAAGAAGGGTGTGCACCTCAATGTCATGGGTTGCACTTGTTTGATACAATGCTTGGGGAGAGCTAAAAGATTTGGTGATATGGTTCGAGTCTTCAATGTTGCAGTTGAAAGAGGGGTTAAACCAGATGATAGGCTCTGTGGGTGTTTACTGTCTGTTGTGTCGTTGTGTGAAAAAACTGAGGATGAGGATATGGTCTTTTCATGCTTGCAGCAGGCTAATCCGAAGTTGGTTACCCTTGTAAAAGTGCTGCAAGATGAGAAGGTAGGGTTTGAGGCAATTAAAGACGAATTCAGGGATGTTATTGGTAGCACTGCAGTTGAATCCAGAAGACCCTTCTGCAATTGCTTGATTGATATATGCAGAAACAAAAATAACCACGAGAGAGCTCATGAGCTGCTCTATCTAGGAACCCTATATGGGTTGTATCCGGGTTTACACAACAAGACAGCGAATGAGTGGTGTTTAGATGTTAGGTCACTATCCATTGGTGCTGCTCACACTGCACTTGAAGAGTGGATGGGAACTCTATACAAAATTGTTCAGCGTGAAGAGGCACTGCCAAAGTTGTTTTCTGCTCAAACCGGTGCTGGAACTCACAAATTCTCTCAAGGACTGGCCCATTCATTTGGTTCTCATGTGAAGAAGTTGGCTGCACCATTTCGGCAGAGTGAAGAGAAAGCTGGTTGTTTTGTGGCAACTCGGGAGGATTTAGTGTCGTGGGTGCAGTCACAGGCACAATCAATCACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

717

Amino Acids

80.77

Weight (kDa)

8.56

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	216 - 275	6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	234 - 276	5.2e-07	PPR repeat family
PPR_long	PF17177	281 - 379	2.1e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	329 - 361	3.5e-06	PPR repeat
PPR_2	PF13041	332 - 377	3.3e-11	PPR repeat family
PPR_long	PF17177	385 - 540	2e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	405 - 448	3.2e-09	PPR repeat family
PPR_1	PF12854	435 - 467	1.3e-06	PPR repeat
PPR_2	PF13041	438 - 475	5.2e-07	PPR repeat family
PPR	PF01535	441 - 471	2.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46580
fragaria_vesca	FvH4_5g21640
malus_domestica	MD06G1031400.v1.1 MD16G1277300.v1.1
prunus_persica	Prupe.5G040700_v2.0.a1
pyrus_communis	pycom06g02620 pycom16g24660
rosa_chinensis	RchiOBHm_Chr7g0209101
rosa_laevigata	RLG00000003167
rosa_multiflora	Rmu_co8470613.1_g000001 Rmu_sc0000821.1_g000010 Rmu_sc0009521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249750
rosa_rugosa	Rorug07G0109100
rosa_samantha	Rh7AG243500 Rh7BG238600 Rh7CG258700 Rh7DG250500
rosa_wichuraiana	Rw7G020640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	111
AccBSI	CCGCTC	1 cut(s)	1180
AccI	GTMKAC	1 cut(s)	125
AccII	CGCG	1 cut(s)	1163
AciI	CCGC	2 cut(s)	743, 1180
AclWI	GGATC	1 cut(s)	557
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	3 cut(s)	40, 1688, 2000
AfaI	GTAC	3 cut(s)	16, 767, 1010
AfeI	AGCGCT	1 cut(s)	356
AfiI	CCNNNNNNNGG	3 cut(s)	345, 1255, 1818
AflIII	ACRYGT	3 cut(s)	534, 1161, 1224
AgeI	ACCGGT	1 cut(s)	1982
AgsI	TTSAA	9 cut(s)	514, 544, 1234, 1342, 1391, 1495, 1508, 1721, 1910
AhlI	ACTAGT	2 cut(s)	11, 17
AjnI	CCWGG	1 cut(s)	1048
AjuI	GAANNNNNNNTTGG	4 cut(s)	983, 1015, 1954, 1986
Alw21I	GWGCWC	3 cut(s)	1305, 1416, 1789
Alw26I	GTCTC	3 cut(s)	52, 572, 1152
Alw44I	GTGCAC	1 cut(s)	1412
AlwI	GGATC	1 cut(s)	557
AlwNI	CAGNNNCTG	1 cut(s)	565
Ama87I	CYCGRG	1 cut(s)	2100
Aor51HI	AGCGCT	1 cut(s)	356
AoxI	GGCC	5 cut(s)	312, 1199, 1310, 1374, 2016
ApaLI	GTGCAC	1 cut(s)	1412
ApeKI	GCWGC	6 cut(s)	449, 1609, 1648, 1795, 1892, 2051
ApoI	RAATTY	3 cut(s)	40, 1688, 2000
AsiGI	ACCGGT	1 cut(s)	1982
AspLEI	GCGC	2 cut(s)	357, 679
AspS9I	GGNCC	2 cut(s)	723, 2017
AsuC2I	CCSGG	3 cut(s)	311, 1090, 1830
AsuHPI	GGTGA	6 cut(s)	69, 100, 589, 805, 941, 1487
AsuII	TTCGAA	1 cut(s)	1071
AvaI	CYCGRG	1 cut(s)	2100
AvaII	GGWCC	1 cut(s)	723
AxyI	CCTNAGG	1 cut(s)	378
BaeGI	GKGCMC	1 cut(s)	1416
BanII	GRGCYC	1 cut(s)	1789
BauI	CACGAG	1 cut(s)	1778
BbsI	GAAGAC	2 cut(s)	1483, 1735
Bbv12I	GWGCWC	3 cut(s)	1305, 1416, 1789
BbvCI	CCTCAGC	1 cut(s)	651
BbvI	GCAGC	6 cut(s)	436, 1621, 1635, 1782, 1879, 2038
BccI	CCATC	6 cut(s)	71, 211, 305, 590, 941, 1912
BceAI	ACGGC	1 cut(s)	1347
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BciT130I	CCWGG	1 cut(s)	1050
BciVI	GTATCC	1 cut(s)	1836
BcnI	CCSGG	3 cut(s)	311, 1090, 1830
BcoDI	GTCTC	3 cut(s)	52, 572, 1152
BcuI	ACTAGT	2 cut(s)	11, 17
BfaI	CTAG	7 cut(s)	12, 18, 455, 876, 1059, 1155, 1805
BfmI	CTRYAG	2 cut(s)	1306, 1713
BfoI	RGCGCY	1 cut(s)	358
BfuAI	ACCTGC	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	1836
BglII	AGATCT	2 cut(s)	388, 1131
BisI	GCNGC	6 cut(s)	450, 1610, 1649, 1796, 1893, 2052
BlsI	GCNGC	6 cut(s)	451, 1611, 1650, 1797, 1894, 2053
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	4 cut(s)	311, 1050, 1090, 1830
Bme18I	GGWCC	1 cut(s)	723
BmeT110I	CYCGRG	1 cut(s)	2100
BmgT120I	GGNCC	2 cut(s)	723, 2017
BmiI	GGNNCC	1 cut(s)	1810
BmrFI	CCNGG	4 cut(s)	311, 1050, 1090, 1830
BmsI	GCATC	2 cut(s)	771, 1094
BpiI	GAAGAC	2 cut(s)	1483, 1735
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	651
Bpu14I	TTCGAA	1 cut(s)	1071
BpuEI	CTTGAG	3 cut(s)	206, 417, 1992
BpuMI	CCSGG	3 cut(s)	311, 1090, 1830
BsaI	GGTCTC	2 cut(s)	52, 572
BsaJI	CCNNGG	3 cut(s)	518, 1249, 1377
BsaWI	WCCGGW	1 cut(s)	1982
BsaXI	ACNNNNNCTCC	6 cut(s)	241, 271, 410, 440, 862, 892
Bsc4I	CCNNNNNNNGG	3 cut(s)	345, 1255, 1818
Bse118I	RCCGGY	1 cut(s)	1982
Bse1I	ACTGG	3 cut(s)	551, 778, 2019
Bse21I	CCTNAGG	1 cut(s)	378
Bse3DI	GCAATG	3 cut(s)	673, 1035, 1341
BseBI	CCWGG	1 cut(s)	1050
BseDI	CCNNGG	3 cut(s)	518, 1249, 1377
BseGI	GGATG	7 cut(s)	768, 1085, 1188, 1267, 1588, 1702, 1923
BseLI	CCNNNNNNNGG	3 cut(s)	345, 1255, 1818
BseMI	GCAATG	3 cut(s)	673, 1035, 1341
BseMII	CTCAG	5 cut(s)	60, 392, 406, 642, 1569
BseNI	ACTGG	3 cut(s)	551, 778, 2019
BseRI	GAGGAG	5 cut(s)	246, 418, 656, 668, 857
BseSI	GKGCMC	1 cut(s)	1416
BseXI	GCAGC	6 cut(s)	436, 1621, 1635, 1782, 1879, 2038
BseYI	CCCAGC	1 cut(s)	935
BsgI	GTGCAG	4 cut(s)	1104, 1887, 2037, 2144
Bsh1236I	CGCG	1 cut(s)	1163
BshFI	GGCC	5 cut(s)	314, 1201, 1312, 1376, 2018
BshTI	ACCGGT	1 cut(s)	1982
BsiHKAI	GWGCWC	3 cut(s)	1305, 1416, 1789
BsiHKCI	CYCGRG	1 cut(s)	2100
BsiSI	CCGG	5 cut(s)	311, 1089, 1313, 1829, 1983
BslFI	GGGAC	3 cut(s)	118, 541, 953
BslI	CCNNNNNNNGG	3 cut(s)	345, 1255, 1818
BsmAI	GTCTC	3 cut(s)	52, 572, 1152
BsmBI	CGTCTC	1 cut(s)	1152
BsmFI	GGGAC	3 cut(s)	118, 541, 953
BsmI	GAATGC	3 cut(s)	24, 440, 1369
BsnI	GGCC	5 cut(s)	314, 1201, 1312, 1376, 2018
Bso31I	GGTCTC	2 cut(s)	52, 572
BsoBI	CYCGRG	1 cut(s)	2100
Bsp119I	TTCGAA	1 cut(s)	1071
Bsp1286I	GDGCHC	3 cut(s)	1305, 1416, 1789
Bsp1407I	TGTACA	2 cut(s)	765, 1008
Bsp143I	GATC	3 cut(s)	388, 549, 1131
Bsp19I	CCATGG	2 cut(s)	518, 1377
BspACI	CCGC	2 cut(s)	743, 1180
BspANI	GGCC	5 cut(s)	314, 1201, 1312, 1376, 2018
BspCNI	CTCAG	5 cut(s)	59, 391, 405, 643, 1570
BspFNI	CGCG	1 cut(s)	1163
BspHI	TCATGA	1 cut(s)	1789
BspLI	GGNNCC	1 cut(s)	1810
BspMAI	CTGCAG	1 cut(s)	1717
BspMI	ACCTGC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	557
BspT104I	TTCGAA	1 cut(s)	1071
BspTNI	GGTCTC	2 cut(s)	52, 572
BsrBI	CCGCTC	1 cut(s)	1180
BsrDI	GCAATG	3 cut(s)	673, 1035, 1341
BsrFI	RCCGGY	1 cut(s)	1982
BsrGI	TGTACA	2 cut(s)	765, 1008
BsrI	ACTGG	3 cut(s)	551, 778, 2019
BssAI	RCCGGY	1 cut(s)	1982
BssECI	CCNNGG	3 cut(s)	518, 1249, 1377
BssMI	GATC	3 cut(s)	388, 549, 1131
BssSI	CACGAG	1 cut(s)	1778
BssT1I	CCWWGG	3 cut(s)	518, 1249, 1377
Bst2BI	CACGAG	1 cut(s)	1778
Bst2UI	CCWGG	1 cut(s)	1050
Bst4CI	ACNGT	4 cut(s)	37, 422, 1307, 1551
Bst6I	CTCTTC	3 cut(s)	1905, 1944, 2067
BstAUI	TGTACA	2 cut(s)	765, 1008
BstBI	TTCGAA	1 cut(s)	1071
BstC8I	GCNNGC	3 cut(s)	648, 1607, 1614
BstDEI	CTNAG	7 cut(s)	46, 378, 392, 651, 851, 1269, 1578
BstDSI	CCRYGG	2 cut(s)	518, 1377
BstEII	GGTNACC	1 cut(s)	1630
BstF5I	GGATG	7 cut(s)	768, 1085, 1188, 1267, 1588, 1702, 1923
BstFNI	CGCG	1 cut(s)	1163
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	2 cut(s)	357, 679
BstKTI	GATC	3 cut(s)	391, 552, 1134
BstMAI	GTCTC	3 cut(s)	52, 572, 1152
BstMBI	GATC	3 cut(s)	388, 549, 1131
BstMWI	GCNNNNNNNGC	8 cut(s)	446, 631, 1151, 1160, 1300, 1309, 1373, 1901
BstNI	CCWGG	1 cut(s)	1050
BstNSI	RCATGY	1 cut(s)	538
BstPI	GGTNACC	1 cut(s)	1630
BstSCI	CCNGG	4 cut(s)	309, 1048, 1088, 1828
BstSFI	CTRYAG	2 cut(s)	1306, 1713
BstSLI	GKGCMC	1 cut(s)	1416
BstUI	CGCG	1 cut(s)	1163
BstV1I	GCAGC	6 cut(s)	436, 1621, 1635, 1782, 1879, 2038
BstV2I	GAAGAC	2 cut(s)	1483, 1735
BstX2I	RGATCY	2 cut(s)	388, 1131
BstXI	CCANNNNNNTGG	1 cut(s)	2027
BstYI	RGATCY	2 cut(s)	388, 1131
Bsu36I	CCTNAGG	1 cut(s)	378
BsuI	GTATCC	1 cut(s)	1836
BsuRI	GGCC	5 cut(s)	314, 1201, 1312, 1376, 2018
BtgI	CCRYGG	2 cut(s)	518, 1377
BtsCI	GGATG	7 cut(s)	768, 1085, 1188, 1267, 1588, 1702, 1923
BtsI	GCAGTG	4 cut(s)	1710, 1899, 1955, 2145
BtsIMutI	CAGTG	7 cut(s)	33, 1202, 1303, 1710, 1899, 1955, 2145
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	648, 1607, 1614
CaiI	CAGNNNCTG	1 cut(s)	565
CciI	TCATGA	1 cut(s)	1789
CfoI	GCGC	2 cut(s)	357, 679
Cfr10I	RCCGGY	1 cut(s)	1982
Cfr13I	GGNCC	2 cut(s)	723, 2017
CseI	GACGC	1 cut(s)	1169
Csp6I	GTAC	3 cut(s)	15, 766, 1009
CspAI	ACCGGT	1 cut(s)	1982
CviAII	CATG	9 cut(s)	519, 535, 601, 610, 1378, 1426, 1602, 1790, 2036
CviQI	GTAC	3 cut(s)	15, 766, 1009
DdeI	CTNAG	7 cut(s)	46, 378, 392, 651, 851, 1269, 1578
DpnI	GATC	3 cut(s)	390, 551, 1133
DpnII	GATC	3 cut(s)	388, 549, 1131
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	3 cut(s)	1905, 1944, 2067
EarI	CTCTTC	3 cut(s)	1905, 1944, 2067
Ecl136II	GAGCTC	1 cut(s)	1787
Eco130I	CCWWGG	3 cut(s)	518, 1249, 1377
Eco24I	GRGCYC	1 cut(s)	1789
Eco31I	GGTCTC	2 cut(s)	52, 572
Eco47I	GGWCC	1 cut(s)	723
Eco47III	AGCGCT	1 cut(s)	356
Eco53kI	GAGCTC	1 cut(s)	1787
Eco81I	CCTNAGG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	2100
Eco91I	GGTNACC	1 cut(s)	1630
EcoICRI	GAGCTC	1 cut(s)	1787
EcoO65I	GGTNACC	1 cut(s)	1630
EcoRI	GAATTC	2 cut(s)	40, 1688
EcoRII	CCWGG	1 cut(s)	1048
EcoT14I	CCWWGG	3 cut(s)	518, 1249, 1377
EcoT38I	GRGCYC	1 cut(s)	1789
ErhI	CCWWGG	3 cut(s)	518, 1249, 1377
Esp3I	CGTCTC	1 cut(s)	1152
FaeI	CATG	9 cut(s)	522, 538, 604, 613, 1381, 1429, 1605, 1793, 2039
FaqI	GGGAC	3 cut(s)	118, 541, 953
FatI	CATG	9 cut(s)	518, 534, 600, 609, 1377, 1425, 1601, 1789, 2035
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	6 cut(s)	450, 1610, 1649, 1796, 1893, 2052
FokI	GGATG	7 cut(s)	775, 1072, 1195, 1274, 1595, 1709, 1930
FriOI	GRGCYC	1 cut(s)	1789
Fsp4HI	GCNGC	6 cut(s)	450, 1610, 1649, 1796, 1893, 2052
FspBI	CTAG	7 cut(s)	12, 18, 455, 876, 1059, 1155, 1805
GlaI	GCGC	2 cut(s)	356, 678
GluI	GCNGC	6 cut(s)	450, 1610, 1649, 1796, 1893, 2052
GsaI	CCCAGC	1 cut(s)	939
GsuI	CTGGAG	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	5 cut(s)	314, 1201, 1312, 1376, 2018
HapII	CCGG	5 cut(s)	311, 1089, 1313, 1829, 1983
HgaI	GACGC	1 cut(s)	1169
HhaI	GCGC	2 cut(s)	357, 679
Hin1II	CATG	9 cut(s)	522, 538, 604, 613, 1381, 1429, 1605, 1793, 2039
Hin6I	GCGC	2 cut(s)	355, 677
HinP1I	GCGC	2 cut(s)	355, 677
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	7 cut(s)	105, 396, 425, 499, 1192, 1488, 1721
HpaII	CCGG	5 cut(s)	311, 1089, 1313, 1829, 1983
HphI	GGTGA	6 cut(s)	69, 100, 589, 805, 941, 1487
Hpy166II	GTNNAC	7 cut(s)	126, 307, 885, 1009, 1414, 1547, 1835
Hpy188I	TCNGA	6 cut(s)	49, 214, 386, 395, 1300, 1623
Hpy188III	TCNNGA	6 cut(s)	343, 434, 455, 1725, 1790, 2102
Hpy8I	GTNNAC	7 cut(s)	126, 307, 885, 1009, 1414, 1547, 1835
HpyAV	CCTTC	4 cut(s)	1030, 1399, 1654, 1744
HpyCH4III	ACNGT	4 cut(s)	37, 422, 1307, 1551
HpyCH4IV	ACGT	2 cut(s)	1016, 1226
HpyF10VI	GCNNNNNNNGC	8 cut(s)	446, 631, 1151, 1160, 1300, 1309, 1373, 1901
HpyF3I	CTNAG	7 cut(s)	46, 378, 392, 651, 851, 1269, 1578
HpySE526I	ACGT	2 cut(s)	1016, 1226
Hsp92II	CATG	9 cut(s)	522, 538, 604, 613, 1381, 1429, 1605, 1793, 2039
HspAI	GCGC	2 cut(s)	355, 677
Kzo9I	GATC	3 cut(s)	388, 549, 1131
LmnI	GCTCC	2 cut(s)	643, 1177
Lsp1109I	GCAGC	6 cut(s)	436, 1621, 1635, 1782, 1879, 2038
LweI	GCATC	2 cut(s)	771, 1094
MaeI	CTAG	7 cut(s)	12, 18, 455, 876, 1059, 1155, 1805
MaeII	ACGT	2 cut(s)	1016, 1226
MaeIII	GTNAC	6 cut(s)	422, 595, 793, 1630, 1875, 2127
MalI	GATC	3 cut(s)	390, 551, 1133
MbiI	CCGCTC	1 cut(s)	1180
MboI	GATC	3 cut(s)	388, 549, 1131
MfeI	CAATTG	1 cut(s)	1741
MflI	RGATCY	2 cut(s)	388, 1131
MhlI	GDGCHC	3 cut(s)	1305, 1416, 1789
MluCI	AATT	9 cut(s)	40, 827, 997, 1169, 1677, 1688, 1741, 1935, 2000
MluI	ACGCGT	1 cut(s)	1161
MlyI	GAGTC	3 cut(s)	390, 419, 1497
MmeI	TCCRAC	1 cut(s)	1146
MseI	TTAA	4 cut(s)	1128, 1518, 1680, 2152
MslI	CAYNNNNRTG	1 cut(s)	1419
MspI	CCGG	5 cut(s)	311, 1089, 1313, 1829, 1983
MspR9I	CCNGG	4 cut(s)	311, 1050, 1090, 1830
MunI	CAATTG	1 cut(s)	1741
Mva1269I	GAATGC	3 cut(s)	24, 440, 1369
MvaI	CCWGG	1 cut(s)	1050
MvnI	CGCG	1 cut(s)	1163
MwoI	GCNNNNNNNGC	8 cut(s)	446, 631, 1151, 1160, 1300, 1309, 1373, 1901
NciI	CCSGG	3 cut(s)	311, 1090, 1830
NcoI	CCATGG	2 cut(s)	518, 1377
NdeII	GATC	3 cut(s)	388, 549, 1131
NlaIII	CATG	9 cut(s)	522, 538, 604, 613, 1381, 1429, 1605, 1793, 2039
NlaIV	GGNNCC	1 cut(s)	1810
NmuCI	GTSAC	5 cut(s)	422, 595, 793, 1875, 2127
NspI	RCATGY	1 cut(s)	538
NspV	TTCGAA	1 cut(s)	1071
PagI	TCATGA	1 cut(s)	1789
PciI	ACATGT	1 cut(s)	534
PctI	GAATGC	3 cut(s)	24, 440, 1369
PfeI	GAWTC	4 cut(s)	105, 499, 1192, 1721
PinAI	ACCGGT	1 cut(s)	1982
PkrI	GCNGC	6 cut(s)	451, 1611, 1650, 1797, 1894, 2053
PleI	GAGTC	3 cut(s)	390, 419, 1496
PpsI	GAGTC	3 cut(s)	390, 419, 1496
PscI	ACATGT	1 cut(s)	534
Psp124BI	GAGCTC	1 cut(s)	1789
Psp6I	CCWGG	1 cut(s)	1048
PspEI	GGTNACC	1 cut(s)	1630
PspFI	CCCAGC	1 cut(s)	935
PspGI	CCWGG	1 cut(s)	1048
PspN4I	GGNNCC	1 cut(s)	1810
PspPI	GGNCC	2 cut(s)	723, 2017
PstI	CTGCAG	1 cut(s)	1717
PstNI	CAGNNNCTG	1 cut(s)	565
PsuI	RGATCY	2 cut(s)	388, 1131
RsaI	GTAC	3 cut(s)	16, 767, 1010
RsaNI	GTAC	3 cut(s)	15, 766, 1009
RseI	CAYNNNNRTG	1 cut(s)	1419
SacI	GAGCTC	1 cut(s)	1789
SaqAI	TTAA	4 cut(s)	1128, 1518, 1680, 2152
SatI	GCNGC	6 cut(s)	450, 1610, 1649, 1796, 1893, 2052
Sau3AI	GATC	3 cut(s)	388, 549, 1131
Sau96I	GGNCC	2 cut(s)	723, 2017
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	3 cut(s)	390, 419, 1497
ScrFI	CCNGG	4 cut(s)	311, 1050, 1090, 1830
SduI	GDGCHC	3 cut(s)	1305, 1416, 1789
SfaNI	GCATC	2 cut(s)	771, 1094
SfcI	CTRYAG	2 cut(s)	1306, 1713
SfuI	TTCGAA	1 cut(s)	1071
SinI	GGWCC	1 cut(s)	723
SmiMI	CAYNNNNRTG	1 cut(s)	1419
SmlI	CTYRAG	3 cut(s)	221, 432, 2007
SmoI	CTYRAG	3 cut(s)	221, 432, 2007
SpeI	ACTAGT	2 cut(s)	11, 17
Sse9I	AATT	9 cut(s)	40, 827, 997, 1169, 1677, 1688, 1741, 1935, 2000
SsiI	CCGC	2 cut(s)	743, 1180
SspMI	CTAG	7 cut(s)	12, 18, 455, 876, 1059, 1155, 1805
SstI	GAGCTC	1 cut(s)	1789
StyD4I	CCNGG	4 cut(s)	309, 1048, 1088, 1828
StyI	CCWWGG	3 cut(s)	518, 1249, 1377
TaaI	ACNGT	4 cut(s)	37, 422, 1307, 1551
TaiI	ACGT	2 cut(s)	1019, 1229
TaqI	TCGA	6 cut(s)	639, 735, 1071, 1190, 1281, 1486
TasI	AATT	9 cut(s)	40, 827, 997, 1169, 1677, 1688, 1741, 1935, 2000
TatI	WGTACW	3 cut(s)	14, 765, 1008
TfiI	GAWTC	4 cut(s)	105, 499, 1192, 1721
Tru1I	TTAA	4 cut(s)	1128, 1518, 1680, 2152
Tru9I	TTAA	4 cut(s)	1128, 1518, 1680, 2152
TscAI	CASTG	7 cut(s)	40, 1202, 1310, 1717, 1906, 1962, 2152
TseFI	GTSAC	5 cut(s)	422, 595, 793, 1875, 2127
TseI	GCWGC	6 cut(s)	449, 1609, 1648, 1795, 1892, 2051
Tsp45I	GTSAC	5 cut(s)	422, 595, 793, 1875, 2127
TspDTI	ATGAA	4 cut(s)	617, 1304, 1590, 2013
TspRI	CASTG	7 cut(s)	40, 1202, 1310, 1717, 1906, 1962, 2152
VneI	GTGCAC	1 cut(s)	1412
VpaK11BI	GGWCC	1 cut(s)	723
XapI	RAATTY	3 cut(s)	40, 1688, 2000
XbaI	TCTAGA	1 cut(s)	454
XceI	RCATGY	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	125
XspI	CTAG	7 cut(s)	12, 18, 455, 876, 1059, 1155, 1805
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.