Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012456

Physical Location & Seq

Genomic Coordinates Reverse (-)

8494147 .. 8494782

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0109100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGATTTCCCCTATCTTCTTCGTATTTTCTCTCATTCTCTCTTCTTCCTATGCTTCACATGTGCAAGACTTCTGTGTTGCAGACTACACAGCCCCTCAAGGCTTTTCAGGGTACGCTTGCAAAGACCCTGCCAAGGTCACGGTAGACGATTTCGTCTACTCCGGCCTAAAAGTCCCCAGTACCACCACGAACATTAACAAATCTGGATTCACAGCTGCCGTTGCCCCTGTATTTCCTGCTCTCAACGGCCTAGGCGTTTCGGTGGCCCTAGCAACCCTGGAGGTTGATGGAGTTTCCCCGCTTCACAGCCACCGCGGAGCTACAGAAGTTATAGTCATCGCAGAAGGAAGTAATATAGTCGCCGGGTTCATTGCCTCGAGTAACAAAGTTTATACAAAGTCTCTGAACAAGGGTGATGCTATTGTTTTTCCACAAGGGTTATATCACTTCTTTTGGAATAAGGGTAAAACTCCGGCCACTATATTTGTTAGCTTCAGTAGCGAAAACCCTGGCGTTCAGGTTCTGGAGAATGCACTGTTCCAAAGCGATTTTCCTACCGAAATCATAGCCAAGACTACTTTACTTGACGTTGCTCAGATTAAGAAACTTAAGGGTGTTTTTAATGGCACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

211

Amino Acids

22.42

Weight (kDa)

6.4

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	55 - 200	4.6e-30	Cupin
Cupin_2	PF07883	90 - 163	2.5e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46580
fragaria_vesca	FvH4_5g21640
malus_domestica	MD06G1031400.v1.1 MD16G1277300.v1.1
prunus_persica	Prupe.5G040700_v2.0.a1
pyrus_communis	pycom06g02620 pycom16g24660
rosa_chinensis	RchiOBHm_Chr7g0209101
rosa_laevigata	RLG00000003167
rosa_multiflora	Rmu_co8470613.1_g000001 Rmu_sc0000821.1_g000010 Rmu_sc0009521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249750
rosa_rugosa	Rorug07G0109100
rosa_samantha	Rh7AG243500 Rh7BG238600 Rh7CG258700 Rh7DG250500
rosa_wichuraiana	Rw7G020640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AccI	GTMKAC	2 cut(s)	144, 156
AccII	CGCG	1 cut(s)	315
AciI	CCGC	3 cut(s)	299, 313, 315
AcoI	YGGCCR	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	478
AfaI	GTAC	2 cut(s)	113, 181
AfiI	CCNNNNNNNGG	1 cut(s)	133
AflII	CTTAAG	1 cut(s)	608
AflIII	ACRYGT	1 cut(s)	58
AjnI	CCWGG	2 cut(s)	276, 508
AjuI	GAANNNNNNNTTGG	2 cut(s)	534, 566
AluBI	AGCT	3 cut(s)	215, 320, 492
AluI	AGCT	3 cut(s)	215, 320, 492
Alw26I	GTCTC	1 cut(s)	405
AlwNI	CAGNNNCTG	1 cut(s)	523
Ama87I	CYCGRG	1 cut(s)	376
AoxI	GGCC	4 cut(s)	163, 247, 264, 474
ApeKI	GCWGC	1 cut(s)	215
AspA2I	CCTAGG	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	425
AvaI	CYCGRG	1 cut(s)	376
AvrII	CCTAGG	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	2 cut(s)	203, 262
BciT130I	CCWGG	2 cut(s)	278, 510
BcnI	CCSGG	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	2 cut(s)	251, 269
BfmI	CTRYAG	1 cut(s)	321
BfrI	CTTAAG	1 cut(s)	608
BisI	GCNGC	1 cut(s)	216
BlnI	CCTAGG	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	3 cut(s)	278, 364, 510
BmeT110I	CYCGRG	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	3 cut(s)	278, 364, 510
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	406
BmuI	ACTGGG	1 cut(s)	171
BpmI	CTGGAG	2 cut(s)	299, 545
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	364
BsaJI	CCNNGG	5 cut(s)	132, 250, 276, 313, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	278, 510
BseDI	CCNNGG	5 cut(s)	132, 250, 276, 313, 508
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	608
BseNI	ACTGG	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	4 cut(s)	165, 249, 266, 476
BsiHKCI	CYCGRG	1 cut(s)	376
BsiSI	CCGG	3 cut(s)	162, 363, 473
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	4 cut(s)	165, 249, 266, 476
BsoBI	CYCGRG	1 cut(s)	376
BspACI	CCGC	3 cut(s)	299, 313, 315
BspANI	GGCC	4 cut(s)	165, 249, 266, 476
BspCNI	CTCAG	1 cut(s)	607
BspFNI	CGCG	1 cut(s)	315
BspTI	CTTAAG	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	5 cut(s)	132, 250, 276, 313, 508
BssT1I	CCWWGG	2 cut(s)	132, 250
Bst2UI	CCWGG	2 cut(s)	278, 510
Bst4CI	ACNGT	2 cut(s)	142, 537
Bst6I	CTCTTC	1 cut(s)	46
BstAFI	CTTAAG	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	594
BstDSI	CCRYGG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	315
BstMAI	GTCTC	1 cut(s)	405
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 498
BstNI	CCWGG	2 cut(s)	278, 510
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	3 cut(s)	276, 362, 508
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	202
BsuRI	GGCC	4 cut(s)	165, 249, 266, 476
BtgI	CCRYGG	1 cut(s)	313
BtgZI	GCGATG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	533
Cac8I	GCNNGC	1 cut(s)	118
CaiI	CAGNNNCTG	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	265
Cfr42I	CCGCGG	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	112, 180
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CviAII	CATG	1 cut(s)	59
CviQI	GTAC	2 cut(s)	112, 180
DdeI	CTNAG	1 cut(s)	594
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	132, 250
Eco57I	CTGAAG	1 cut(s)	478
Eco88I	CYCGRG	1 cut(s)	376
EcoRII	CCWGG	2 cut(s)	276, 508
EcoT14I	CCWWGG	2 cut(s)	132, 250
ErhI	CCWWGG	2 cut(s)	132, 250
FaeI	CATG	1 cut(s)	62
FaiI	YATR	8 cut(s)	51, 60, 332, 356, 393, 442, 482, 566
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	1 cut(s)	58
FauI	CCCGC	1 cut(s)	306
FblI	GTMKAC	2 cut(s)	144, 156
Fnu4HI	GCNGC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	2 cut(s)	251, 269
GluI	GCNGC	1 cut(s)	216
GsuI	CTGGAG	2 cut(s)	299, 545
HaeIII	GGCC	4 cut(s)	165, 249, 266, 476
HapII	CCGG	3 cut(s)	162, 363, 473
Hin1II	CATG	1 cut(s)	62
HinfI	GANTC	1 cut(s)	207
HpaII	CCGG	3 cut(s)	162, 363, 473
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	145, 157
Hpy188I	TCNGA	2 cut(s)	405, 597
Hpy188III	TCNNGA	2 cut(s)	204, 524
Hpy8I	GTNNAC	2 cut(s)	145, 157
HpyAV	CCTTC	1 cut(s)	338
HpyCH4III	ACNGT	2 cut(s)	142, 537
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	4 cut(s)	64, 80, 120, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 498
HpyF3I	CTNAG	1 cut(s)	594
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	1 cut(s)	62
KspI	CCGCGG	1 cut(s)	316
LmnI	GCTCC	1 cut(s)	317
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	2 cut(s)	251, 269
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	2 cut(s)	136, 380
MboII	GAAGA	4 cut(s)	7, 10, 33, 36
MluCI	AATT	1 cut(s)	631
MnlI	CCTC	3 cut(s)	105, 274, 385
MseI	TTAA	4 cut(s)	195, 600, 609, 621
MspA1I	CMGCKG	2 cut(s)	215, 315
MspCI	CTTAAG	1 cut(s)	608
MspI	CCGG	3 cut(s)	162, 363, 473
MspR9I	CCNGG	3 cut(s)	278, 364, 510
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	2 cut(s)	278, 510
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	2 cut(s)	221, 498
NciI	CCSGG	1 cut(s)	364
NlaIII	CATG	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	376
PciI	ACATGT	1 cut(s)	58
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	1 cut(s)	535
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	217
PscI	ACATGT	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	276, 508
PspGI	CCWGG	2 cut(s)	276, 508
PspPI	GGNCC	1 cut(s)	265
PspXI	VCTCGAGB	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	523
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	2 cut(s)	113, 181
RsaNI	GTAC	2 cut(s)	112, 180
SacII	CCGCGG	1 cut(s)	316
SaqAI	TTAA	4 cut(s)	195, 600, 609, 621
SatI	GCNGC	1 cut(s)	216
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	3 cut(s)	278, 364, 510
SetI	ASST	7 cut(s)	138, 217, 285, 322, 494, 522, 591
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	321
Sfr274I	CTCGAG	1 cut(s)	376
Sfr303I	CCGCGG	1 cut(s)	316
SgrBI	CCGCGG	1 cut(s)	316
SlaI	CTCGAG	1 cut(s)	376
SmlI	CTYRAG	3 cut(s)	96, 376, 608
SmoI	CTYRAG	3 cut(s)	96, 376, 608
Sse9I	AATT	1 cut(s)	631
SsiI	CCGC	3 cut(s)	299, 313, 315
SspMI	CTAG	2 cut(s)	251, 269
StyD4I	CCNGG	3 cut(s)	276, 362, 508
StyI	CCWWGG	2 cut(s)	132, 250
TaaI	ACNGT	2 cut(s)	142, 537
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	1 cut(s)	377
TasI	AATT	1 cut(s)	631
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	4 cut(s)	195, 600, 609, 621
Tru9I	TTAA	4 cut(s)	195, 600, 609, 621
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	358
TspRI	CASTG	1 cut(s)	540
Vha464I	CTTAAG	1 cut(s)	608
XceI	RCATGY	1 cut(s)	62
XhoI	CTCGAG	1 cut(s)	376
XmaJI	CCTAGG	1 cut(s)	250
XmiI	GTMKAC	2 cut(s)	144, 156
XspI	CTAG	2 cut(s)	251, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.