Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0012456

Physical Location & Seq

Genomic Coordinates Reverse (-)

3153578 .. 3154282

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCTACTAGTGCGGTCCACTGGAATGTGAATTCAGATACAAAGAGACCCATCTTCTTCTCTCCATCTTTTCGACAAATTTCACCCAAAAAATTCAACATTTCTTGCCGCTCTGCCAAGTCTCTTCCCAAATCTCCTGCGGATTTAGCCGAACCCGCCGCCAACACCGCCGCTACCACCAAGAAGACGAAGAGCAAAGACCCATCTCTATCTTTGTCTGAGCAACTCCGGCCTCTAACCATAACCACCCTCTCCGACCCTCCTCCGCCAAAAGACCAATCCCAGTTGATATCCAAGCCCAAATCCATCTGGGTTAACCCGGCCAAGCCCAAACGCTCTGTGCTCTCTCTGCAGCGGCAGAAGCGGTCTCTCTACTCTTACAATCCTCAAGTGAGAGATCTGAGGGGGTTTGCCCACAAGCTCAACGATTGCGATGCCACTAAAGTTGCCTTCTTGGCCACCCTTGAAGAAATCCCGCACCCGCCCACCCGAGCAAATGCGCTTTTAATTCTGAACAGCTTGAAGCCATGGCAGAAAACCCACATGTTCTTCAACTGGGTCAAGTCCCAGAATTTGTTTCCCATGGAAACCATATTCTACAATGTCACTATGAAGTCTCTGAGATTCGGGAGGCAGTTTCAGCTCATCGAAGAGCTCGCGGAAGAGATGATAAGGGACGAGATTGAGCTCGATAACATTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

235

Amino Acids

26.66

Weight (kDa)

9.86

Isoelectric Point (pI)

61.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46580
fragaria_vesca	FvH4_5g21640
malus_domestica	MD06G1031400.v1.1 MD16G1277300.v1.1
prunus_persica	Prupe.5G040700_v2.0.a1
pyrus_communis	pycom06g02620 pycom16g24660
rosa_chinensis	RchiOBHm_Chr7g0209101
rosa_laevigata	RLG00000003167
rosa_multiflora	Rmu_co8470613.1_g000001 Rmu_sc0000821.1_g000010 Rmu_sc0009521.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249750
rosa_rugosa	Rorug07G0109100
rosa_samantha	Rh7AG243500 Rh7BG238600 Rh7CG258700 Rh7DG250500
rosa_wichuraiana	Rw7G020640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	111
AccII	CGCG	1 cut(s)	659
AcoI	YGGCCR	2 cut(s)	321, 456
AcsI	RAATTY	4 cut(s)	31, 78, 92, 571
AflIII	ACRYGT	1 cut(s)	543
AgsI	TTSAA	4 cut(s)	97, 467, 523, 553
AhlI	ACTAGT	1 cut(s)	8
AluBI	AGCT	5 cut(s)	421, 519, 643, 655, 688
AluI	AGCT	5 cut(s)	421, 519, 643, 655, 688
Alw21I	GWGCWC	3 cut(s)	345, 657, 690
Alw26I	GTCTC	4 cut(s)	40, 126, 372, 621
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	3 cut(s)	230, 321, 456
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	4 cut(s)	31, 78, 92, 571
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	75
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	458
BanII	GRGCYC	2 cut(s)	657, 690
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	3 cut(s)	345, 657, 690
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	4 cut(s)	59, 73, 211, 314
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	4 cut(s)	40, 126, 372, 621
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	350
BglI	GCCNNNNNGGC	1 cut(s)	455
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	5 cut(s)	109, 159, 171, 353, 356
BlsI	GCNGC	5 cut(s)	110, 160, 172, 354, 357
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	320
BmrI	ACTGGG	2 cut(s)	277, 565
BmsI	GCATC	1 cut(s)	424
BmuI	ACTGGG	2 cut(s)	277, 565
BpiI	GAAGAC	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	320
BsaI	GGTCTC	2 cut(s)	40, 372
BsaJI	CCNNGG	2 cut(s)	527, 582
Bse1I	ACTGG	3 cut(s)	26, 283, 560
BseDI	CCNNGG	2 cut(s)	527, 582
BseMII	CTCAG	3 cut(s)	210, 392, 611
BseNI	ACTGG	3 cut(s)	26, 283, 560
BseRI	GAGGAG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	659
BshFI	GGCC	3 cut(s)	232, 323, 458
BsiHKAI	GWGCWC	3 cut(s)	345, 657, 690
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	2 cut(s)	229, 320
BslFI	GGGAC	2 cut(s)	550, 689
BsmAI	GTCTC	4 cut(s)	40, 126, 372, 621
BsmFI	GGGAC	2 cut(s)	550, 689
BsnI	GGCC	3 cut(s)	232, 323, 458
Bso31I	GGTCTC	2 cut(s)	40, 372
BsoBI	CYCGRG	1 cut(s)	489
Bsp1286I	GDGCHC	3 cut(s)	345, 657, 690
Bsp143I	GATC	1 cut(s)	397
Bsp19I	CCATGG	2 cut(s)	527, 582
BspANI	GGCC	3 cut(s)	232, 323, 458
BspCNI	CTCAG	3 cut(s)	211, 393, 612
BspFNI	CGCG	1 cut(s)	659
BspMAI	CTGCAG	1 cut(s)	354
BspQI	GCTCTTC	2 cut(s)	185, 645
BspTNI	GGTCTC	2 cut(s)	40, 372
BsrBI	CCGCTC	1 cut(s)	111
BsrI	ACTGG	3 cut(s)	26, 283, 560
BssECI	CCNNGG	2 cut(s)	527, 582
BssMI	GATC	1 cut(s)	397
BssT1I	CCWWGG	2 cut(s)	527, 582
Bst6I	CTCTTC	4 cut(s)	129, 185, 645, 657
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	3 cut(s)	219, 401, 620
BstDSI	CCRYGG	2 cut(s)	527, 582
BstFNI	CGCG	1 cut(s)	659
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	1 cut(s)	400
BstMAI	GTCTC	4 cut(s)	40, 126, 372, 621
BstMBI	GATC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 146, 155, 167, 229, 349, 361, 455, 640
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	350
BstUI	CGCG	1 cut(s)	659
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	3 cut(s)	232, 323, 458
BtgI	CCRYGG	2 cut(s)	527, 582
BtgZI	GCGATG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	657
CfoI	GCGC	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	16
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	3 cut(s)	528, 544, 583
DdeI	CTNAG	3 cut(s)	219, 401, 620
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
EaeI	YGGCCR	2 cut(s)	321, 456
Eam1104I	CTCTTC	4 cut(s)	129, 185, 645, 657
EarI	CTCTTC	4 cut(s)	129, 185, 645, 657
EciI	GGCGGA	1 cut(s)	255
Ecl136II	GAGCTC	2 cut(s)	655, 688
Eco130I	CCWWGG	2 cut(s)	527, 582
Eco24I	GRGCYC	2 cut(s)	657, 690
Eco31I	GGTCTC	2 cut(s)	40, 372
Eco32I	GATATC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	16
Eco53kI	GAGCTC	2 cut(s)	655, 688
Eco88I	CYCGRG	1 cut(s)	489
EcoICRI	GAGCTC	2 cut(s)	655, 688
EcoRI	GAATTC	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	291
EcoT14I	CCWWGG	2 cut(s)	527, 582
EcoT38I	GRGCYC	2 cut(s)	657, 690
ErhI	CCWWGG	2 cut(s)	527, 582
FaeI	CATG	3 cut(s)	531, 547, 586
FaiI	YATR	7 cut(s)	242, 529, 545, 584, 593, 611, 703
FaqI	GGGAC	2 cut(s)	550, 689
FatI	CATG	3 cut(s)	527, 543, 582
FauI	CCCGC	3 cut(s)	163, 483, 489
Fnu4HI	GCNGC	5 cut(s)	109, 159, 171, 353, 356
FriOI	GRGCYC	2 cut(s)	657, 690
Fsp4HI	GCNGC	5 cut(s)	109, 159, 171, 353, 356
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	5 cut(s)	109, 159, 171, 353, 356
HaeIII	GGCC	3 cut(s)	232, 323, 458
HapII	CCGG	2 cut(s)	229, 320
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	3 cut(s)	531, 547, 586
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	1 cut(s)	624
HpaI	GTTAAC	1 cut(s)	316
HpaII	CCGG	2 cut(s)	229, 320
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	2 cut(s)	19, 316
Hpy188I	TCNGA	6 cut(s)	37, 220, 256, 402, 513, 621
Hpy188III	TCNNGA	1 cut(s)	628
Hpy8I	GTNNAC	2 cut(s)	19, 316
HpyAV	CCTTC	1 cut(s)	460
HpyCH4V	TGCA	1 cut(s)	352
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 146, 155, 167, 229, 349, 361, 455, 640
HpyF3I	CTNAG	3 cut(s)	219, 401, 620
Hsp92II	CATG	3 cut(s)	531, 547, 586
HspAI	GCGC	1 cut(s)	500
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	397
LguI	GCTCTTC	2 cut(s)	185, 645
LpnPI	CCDG	8 cut(s)	7, 150, 242, 295, 296, 333, 541, 581
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	1 cut(s)	399
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	1 cut(s)	397
MboII	GAAGA	9 cut(s)	46, 49, 116, 196, 202, 479, 541, 662, 674
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	3 cut(s)	345, 657, 690
MlsI	TGGCCA	1 cut(s)	458
MluCI	AATT	5 cut(s)	31, 78, 92, 507, 571
MluNI	TGGCCA	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	7 cut(s)	243, 260, 270, 273, 396, 396, 624
Mox20I	TGGCCA	1 cut(s)	458
MscI	TGGCCA	1 cut(s)	458
MseI	TTAA	2 cut(s)	315, 506
MslI	CAYNNNNRTG	1 cut(s)	24
Msp20I	TGGCCA	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	2 cut(s)	229, 320
MspR9I	CCNGG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	659
MwoI	GCNNNNNNNGC	9 cut(s)	11, 146, 155, 167, 229, 349, 361, 455, 640
NciI	CCSGG	1 cut(s)	320
NcoI	CCATGG	2 cut(s)	527, 582
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	3 cut(s)	531, 547, 586
NmuCI	GTSAC	1 cut(s)	604
NspI	RCATGY	1 cut(s)	547
PciI	ACATGT	1 cut(s)	543
PciSI	GCTCTTC	2 cut(s)	185, 645
PfeI	GAWTC	1 cut(s)	624
PkrI	GCNGC	5 cut(s)	110, 160, 172, 354, 357
PscI	ACATGT	1 cut(s)	543
Psp124BI	GAGCTC	2 cut(s)	657, 690
PspPI	GGNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	24
SacI	GAGCTC	2 cut(s)	657, 690
SapI	GCTCTTC	2 cut(s)	185, 645
SaqAI	TTAA	2 cut(s)	315, 506
SatI	GCNGC	5 cut(s)	109, 159, 171, 353, 356
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	3 cut(s)	345, 657, 690
SetI	ASST	5 cut(s)	423, 521, 645, 657, 690
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
SpeI	ACTAGT	1 cut(s)	8
Sse9I	AATT	5 cut(s)	31, 78, 92, 507, 571
SspMI	CTAG	1 cut(s)	9
SstI	GAGCTC	2 cut(s)	657, 690
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	2 cut(s)	527, 582
TaqI	TCGA	3 cut(s)	73, 648, 690
TasI	AATT	5 cut(s)	31, 78, 92, 507, 571
TauI	GCSGC	4 cut(s)	111, 161, 173, 358
TfiI	GAWTC	1 cut(s)	624
Tru1I	TTAA	2 cut(s)	315, 506
Tru9I	TTAA	2 cut(s)	315, 506
TscAI	CASTG	1 cut(s)	26
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	1 cut(s)	626
TspRI	CASTG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	4 cut(s)	31, 78, 92, 571
XceI	RCATGY	1 cut(s)	547
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.