MD06G1127800.v1.1
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0006309
Physical Location & Seq
Reverse (-)
26980060 .. 26984800
4741 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1127800.v1.1.491

Sequence Viewer

Length: 2295 bp
ATGCAGCAGCAACCAGCAGCGGGAGGAGCTGGAGGAGTTGGAGGAGGGTCCCAAACCCATTACGGAGGAGGAGGAGAGATGAGTGCTGCTGAAGCTGCGGCGTCGGCGGAGCAAGGCCAGCTGGTGGTGGAAGCGGCGTCGCCAATCAGCAGCAGGCCGCCAGCTTCCGCGGCGGTGAATATGGACGAGCTGATGACTCTGTCCGGTGCGGCGGTTGCAGATGAAGATGCTCTCGCGGATCGAGGTGGCGGCGGTGGGTCCAGCGGGAACAGATGGCCGCGTCAGGAGACCTTGGCGCTTCTCAAAATCAGGTCCGATATGGATGCGACCTTCCGCGACGCAACCCTCAAAGGCCCCTTGTGGGAAGATGTCTCCAGGAAACTAGCGGAATTGGGGTACAAAAGAAATGCCAAGAAATGCAAGGAGAAATTCGAAAACGTTCACAAATATTACAAGCGGACGAAAGAAGGCCGCGCGGGACGCCAAGACGGCAAAAGCTACAAGTTTTTCAGCGAGATGGAGGCTTTACATGGCACCGCCGCCGCAACGACGGCCCACGTGTCGGCCTCTCCGGGAGTGCACGCCGCACACGCTTCTCCGAACCCCGTTTCGGTCGGGTTTGGGTCTGTCAGTAACCCCATGCCCATCTCCTCGTTCAGAATGTCACCCACGATTCCAGTAATCCCCTCCCAACAGCAGCAACAAGCCACTGCAATTCCAATAATACCTTCGTCGCAACCTACAGCCACGCCGATGGACGTTAACTTCTCATCCAACAGCTCGTCGACTTCCCCGGGAACTGACGACGAGGACGACGATGATGACATGGAAGGAGAGCCCTCGAGTCGGAAGAGAAAACGGGGGAGTGCTAGTACTAGTACCGGAACTAGTGGCGGCGGAAGTACCCGAAAAATGATGGCGTTTTTCGAGGTTTTGATGAAGCAAGTGATGCAAAAGCAAGAGAGCATGCAGCAGAGGTTTCTAGAAGTGATAGAGAAGAGGGAGCAGGACAGAACTATCAGGGAGGAGGCGTGGAAGCGTCAGGAGATGGCCCGGCTAACTCGCGAGCACGAGCTCATGAGTCAAGAGCGGGCCATTTCTGCTTCCAGAGACGCTGCCATTATCGCTTTCCTCCAGAAAATTACTGGCCAGACTATTCAGTTGCCTCCGGCTCTCAACGTCCACGTCGCTCCCCCACCACCTGTGTCTCCGTCGGTGTCAGTTGTCGCGCCATTACCACAGACAACGCCACCGCCACAGCCACAGCCGACGACACAGACATATCAAACACCGCAACAGCAACAACCTCAGCCGCCGCAACAAGTGCAACACGTTCGTCATATTCAGCAGACACAAAATGTTCAACCGGTGATGGCTGTACCGGAACAACAGGTACCTCCTCCGACACCGCAGGAGAATATTGCTAGCGGTGGAGGAGGGAGCTCCGAGCCCGCATCGTCCTCTAGATGGCCGAAGGCAGAAGTGCTAGCGCTGATAAAGTTGAGGAGTGGGCTTGAGCCGAGGTACCAAGAGTCAGGTCCGAAGGGCCCACTTTGGGAGGAAATCTCCGCCGGTATGGGGCGGATGGGGTACAAGAGGCGTGCCAAGAGGTGCAAGGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAACAAGAAGCGGCCGGAAGATGCGAAAACGTGTCCATATTTTCACGAACTAGATGCTCTTTACCGGAAAAGGGTACTTGGCGGCTGGTCTAGCGGCGGCAGCAGCGGCTCATTAGGAAATAAACTAGAACAACAACCGCAACAACAGGAGAACCCAAAATCGGGTTCATCCACACATCCGCAACCAAGTGCGCATACAGTGCCACAAACACAAGGGCAAGTAGTAGCGGCCGGATCAGAAAACAAGGATACAGATCATAGCACAAGTGTGGAAACAAATTTGAGAGCTAACCTCTTTGCAGAGGGAAAAGAAGAGGCTGCCAAGAAGCCAGAAGACATTGTGAAGGAGTTGATGGAAGTGCATGATCATCACCAGCAAGTTTTCCAACAAGGGCAGCCACAACATTTAGTAGTAGATGACTACAACAGGATGGAGGAAGCGGATAGCGATAATCTTATGGATCAAGAGGAGGAGGACATGGAAGACGATGATATTGACGAGGACGACGATGAAGAAACCGAACAAGAGAGGAAGATGGCGTATAAGATAGAGTTTCAGAAGCAGAATACGGGCCGTTCGTCTAACGGCGGAGGCAACGGTGCACCCTCTTTCCTCGCCATGGTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006275 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008156 GO:0008361 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010026 GO:0010035 GO:0010090 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0030308 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031668 GO:0032502 GO:0032535 GO:0032774 GO:0032875 GO:0032876 GO:0032989 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0040008 GO:0042221 GO:0042631 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045786 GO:0045892 GO:0045926 GO:0045934 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048580 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090066 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0097159 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000037 GO:2000038 GO:2000104 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

765

Amino Acids

83.3

Weight (kDa)

5.75

Isoelectric Point (pI)

66.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 90 - 176 2e-24 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 488 - 575 9.3e-25 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1857
Acc65I GGTACC 2 cut(s) 1393, 1524
AccB1I GGYRCC 3 cut(s) 533, 1393, 1524
AccB7I CCANNNNNTGG 1 cut(s) 124
AccBSI CCGCTC 1 cut(s) 1090
AccI GTMKAC 1 cut(s) 785
AccII CGCG 8 cut(s) 170, 236, 280, 336, 474, 476, 1065, 1229
AclI AACGTT 1 cut(s) 438
AclWI GGATC 3 cut(s) 246, 1906, 2133
AcoI YGGCCR 5 cut(s) 275, 1147, 1469, 1676, 1893
AcsI RAATTY 2 cut(s) 428, 1942
AcuI CTGAAG 1 cut(s) 111
AcvI CACGTG 1 cut(s) 559
AcyI GRCGYC 3 cut(s) 101, 137, 481
AfeI AGCGCT 1 cut(s) 1491
AflIII ACRYGT 3 cut(s) 558, 1330, 1694
AgeI ACCGGT 1 cut(s) 1366
AgsI TTSAA 3 cut(s) 1364, 1648, 2291
AhlI ACTAGT 2 cut(s) 875, 887
AjiI CACGTC 1 cut(s) 1186
AjnI CCWGG 1 cut(s) 374
AjuI GAANNNNNNNTTGG 4 cut(s) 712, 744, 1813, 1845
AleI CACNNNNGTG 1 cut(s) 1931
Alw21I GWGCWC 5 cut(s) 582, 1071, 1077, 1445, 2269
Alw26I GTCTC 4 cut(s) 281, 376, 1104, 1212
Alw44I GTGCAC 2 cut(s) 578, 2265
AlwI GGATC 3 cut(s) 246, 1906, 2133
Ama87I CYCGRG 2 cut(s) 793, 841
Aor51HI AGCGCT 1 cut(s) 1491
ApaI GGGCCC 1 cut(s) 1550
ApaLI GTGCAC 2 cut(s) 578, 2265
ApoI RAATTY 2 cut(s) 428, 1942
AsiGI ACCGGT 1 cut(s) 1366
Asp700I GAANNNNTTC 1 cut(s) 438
Asp718I GGTACC 2 cut(s) 1393, 1524
AspLEI GCGC 5 cut(s) 298, 476, 1231, 1492, 1858
AsuC2I CCSGG 4 cut(s) 573, 794, 795, 1054
AsuHPI GGTGA 5 cut(s) 187, 657, 1381, 1666, 2027
AsuII TTCGAA 1 cut(s) 432
AsuNHI GCTAGC 2 cut(s) 1424, 1486
AvaI CYCGRG 2 cut(s) 793, 841
AvaII GGWCC 4 cut(s) 48, 258, 312, 1538
BaeGI GKGCMC 3 cut(s) 582, 1550, 2269
BalI TGGCCA 1 cut(s) 1149
BanI GGYRCC 3 cut(s) 533, 1393, 1524
BanII GRGCYC 5 cut(s) 840, 1077, 1445, 1452, 1550
BauI CACGAG 1 cut(s) 1070
BbrPI CACGTG 1 cut(s) 559
BbsI GAAGAC 2 cut(s) 2004, 2154
Bbv12I GWGCWC 5 cut(s) 582, 1071, 1077, 1445, 2269
BbvCI CCTCAGC 1 cut(s) 1308
BceAI ACGGC 4 cut(s) 505, 567, 2223, 2266
BcgI CGANNNNNNTGC 6 cut(s) 305, 339, 1316, 1350, 1700, 1734
BciT130I CCWGG 1 cut(s) 376
BciVI GTATCC 1 cut(s) 1906
BclI TGATCA 1 cut(s) 2029
BcnI CCSGG 4 cut(s) 573, 794, 795, 1054
BcoDI GTCTC 4 cut(s) 281, 376, 1104, 1212
BcuI ACTAGT 2 cut(s) 875, 887
BfmI CTRYAG 1 cut(s) 741
BfoI RGCGCY 2 cut(s) 299, 1493
BfuI GTATCC 1 cut(s) 1906
BglI GCCNNNNNGGC 1 cut(s) 489
BmcAI AGTACT 2 cut(s) 874, 1643
Bme1390I CCNGG 5 cut(s) 376, 573, 794, 795, 1054
Bme18I GGWCC 4 cut(s) 48, 258, 312, 1538
BmeT110I CYCGRG 2 cut(s) 793, 841
BmgBI CACGTC 1 cut(s) 1186
BmiI GGNNCC 8 cut(s) 49, 50, 259, 355, 535, 1395, 1526, 1548
BmrFI CCNGG 5 cut(s) 376, 573, 794, 795, 1054
BmsI GCATC 6 cut(s) 217, 313, 939, 1463, 1675, 1708
BmtI GCTAGC 2 cut(s) 1428, 1490
BpiI GAAGAC 2 cut(s) 2004, 2154
BplI GAGNNNNNCTC 4 cut(s) 1550, 1582, 1941, 1973
BpmI CTGGAG 3 cut(s) 51, 358, 1118
Bpu10I CCTNAGC 1 cut(s) 1308
Bpu14I TTCGAA 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 1535
BpuMI CCSGG 4 cut(s) 573, 794, 795, 1054
BsaAI YACGTR 1 cut(s) 559
BsaBI GATNNNNATC 1 cut(s) 1917
BsaHI GRCGYC 3 cut(s) 101, 137, 481
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 6 cut(s) 168, 291, 792, 793, 1520, 2283
BsaWI WCCGGW 5 cut(s) 203, 881, 1366, 1381, 1728
BsaXI ACNNNNNCTCC 4 cut(s) 856, 886, 1016, 1046
Bse118I RCCGGY 2 cut(s) 1366, 1571
Bse1I ACTGG 2 cut(s) 677, 1150
Bse8I GATNNNNATC 1 cut(s) 1917
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 6 cut(s) 168, 291, 792, 793, 1520, 2283
BseGI GGATG 6 cut(s) 328, 770, 1590, 1832, 1840, 2100
BseJI GATNNNNATC 1 cut(s) 1917
BseMII CTCAG 1 cut(s) 1322
BseNI ACTGG 2 cut(s) 677, 1150
BseSI GKGCMC 3 cut(s) 582, 1550, 2269
BseX3I CGGCCG 2 cut(s) 1676, 1893
Bsh1236I CGCG 8 cut(s) 170, 236, 280, 336, 474, 476, 1065, 1229
Bsh1285I CGRYCG 3 cut(s) 615, 1679, 1896
BshNI GGYRCC 3 cut(s) 533, 1393, 1524
BshTI ACCGGT 1 cut(s) 1366
BsiEI CGRYCG 3 cut(s) 615, 1679, 1896
BsiHKAI GWGCWC 5 cut(s) 582, 1071, 1077, 1445, 2269
BsiHKCI CYCGRG 2 cut(s) 793, 841
BslFI GGGAC 2 cut(s) 34, 492
BsmAI GTCTC 4 cut(s) 281, 376, 1104, 1212
BsmBI CGTCTC 1 cut(s) 1104
BsmFI GGGAC 2 cut(s) 34, 492
Bso31I GGTCTC 1 cut(s) 281
BsoBI CYCGRG 2 cut(s) 793, 841
Bsp119I TTCGAA 1 cut(s) 432
Bsp120I GGGCCC 1 cut(s) 1546
Bsp1286I GDGCHC 8 cut(s) 582, 840, 1071, 1077, 1445, 1452, 1550, 2269
Bsp143I GATC 5 cut(s) 238, 1898, 1918, 2029, 2125
Bsp19I CCATGG 1 cut(s) 2283
Bsp68I TCGCGA 1 cut(s) 1065
BspCNI CTCAG 1 cut(s) 1321
BspFNI CGCG 8 cut(s) 170, 236, 280, 336, 474, 476, 1065, 1229
BspHI TCATGA 1 cut(s) 1077
BspLI GGNNCC 8 cut(s) 49, 50, 259, 355, 535, 1395, 1526, 1548
BspOI GCTAGC 2 cut(s) 1428, 1490
BspPI GGATC 3 cut(s) 246, 1906, 2133
BspT104I TTCGAA 1 cut(s) 432
BspT107I GGYRCC 3 cut(s) 533, 1393, 1524
BspTNI GGTCTC 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 1090
BsrFI RCCGGY 2 cut(s) 1366, 1571
BsrI ACTGG 2 cut(s) 677, 1150
BssAI RCCGGY 2 cut(s) 1366, 1571
BssECI CCNNGG 6 cut(s) 168, 291, 792, 793, 1520, 2283
BssMI GATC 5 cut(s) 238, 1898, 1918, 2029, 2125
BssNI GRCGYC 3 cut(s) 101, 137, 481
BssSI CACGAG 1 cut(s) 1070
BssT1I CCWWGG 2 cut(s) 291, 2283
Bst2BI CACGAG 1 cut(s) 1070
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 2 cut(s) 1864, 2264
Bst6I CTCTTC 3 cut(s) 845, 992, 1971
BstACI GRCGYC 3 cut(s) 101, 137, 481
BstAPI GCANNNNNTGC 3 cut(s) 949, 1324, 1864
BstBAI YACGTR 1 cut(s) 559
BstBI TTCGAA 1 cut(s) 432
BstDEI CTNAG 1 cut(s) 1308
BstDSI CCRYGG 2 cut(s) 168, 2283
BstF5I GGATG 6 cut(s) 328, 770, 1590, 1832, 1840, 2100
BstFNI CGCG 8 cut(s) 170, 236, 280, 336, 474, 476, 1065, 1229
BstH2I RGCGCY 2 cut(s) 299, 1493
BstHHI GCGC 5 cut(s) 298, 476, 1231, 1492, 1858
BstKTI GATC 5 cut(s) 241, 1901, 1921, 2032, 2128
BstMAI GTCTC 4 cut(s) 281, 376, 1104, 1212
BstMBI GATC 5 cut(s) 238, 1898, 1918, 2029, 2125
BstMCI CGRYCG 3 cut(s) 615, 1679, 1896
BstNI CCWGG 1 cut(s) 376
BstNSI RCATGY 1 cut(s) 970
BstSCI CCNGG 5 cut(s) 374, 571, 792, 793, 1052
BstSFI CTRYAG 1 cut(s) 741
BstSLI GKGCMC 3 cut(s) 582, 1550, 2269
BstUI CGCG 8 cut(s) 170, 236, 280, 336, 474, 476, 1065, 1229
BstV2I GAAGAC 2 cut(s) 2004, 2154
BstXI CCANNNNNNTGG 1 cut(s) 754
BstZI CGGCCG 2 cut(s) 1676, 1893
BsuI GTATCC 1 cut(s) 1906
BtgI CCRYGG 2 cut(s) 168, 2283
BtrI CACGTC 1 cut(s) 1186
BtsCI GGATG 6 cut(s) 328, 770, 1590, 1832, 1840, 2100
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 2 cut(s) 708, 1869
BtuMI TCGCGA 1 cut(s) 1065
CciI TCATGA 1 cut(s) 1077
CfoI GCGC 5 cut(s) 298, 476, 1231, 1492, 1858
Cfr10I RCCGGY 2 cut(s) 1366, 1571
Cfr42I CCGCGG 1 cut(s) 171
Cfr9I CCCGGG 1 cut(s) 793
CseI GACGC 7 cut(s) 90, 126, 269, 347, 489, 1028, 1121
CspAI ACCGGT 1 cut(s) 1366
CviAII CATG 8 cut(s) 530, 640, 826, 967, 1078, 2027, 2143, 2284
DdeI CTNAG 1 cut(s) 1308
DpnI GATC 5 cut(s) 240, 1900, 1920, 2031, 2127
DpnII GATC 5 cut(s) 238, 1898, 1918, 2029, 2125
EaeI YGGCCR 5 cut(s) 275, 1147, 1469, 1676, 1893
EagI CGGCCG 2 cut(s) 1676, 1893
Eam1104I CTCTTC 3 cut(s) 845, 992, 1971
EarI CTCTTC 3 cut(s) 845, 992, 1971
EciI GGCGGA 5 cut(s) 122, 912, 1558, 1597, 2268
Ecl136II GAGCTC 2 cut(s) 1075, 1443
EclXI CGGCCG 2 cut(s) 1676, 1893
Eco130I CCWWGG 2 cut(s) 291, 2283
Eco24I GRGCYC 5 cut(s) 840, 1077, 1445, 1452, 1550
Eco31I GGTCTC 1 cut(s) 281
Eco47I GGWCC 4 cut(s) 48, 258, 312, 1538
Eco47III AGCGCT 1 cut(s) 1491
Eco52I CGGCCG 2 cut(s) 1676, 1893
Eco53kI GAGCTC 2 cut(s) 1075, 1443
Eco57I CTGAAG 1 cut(s) 111
Eco72I CACGTG 1 cut(s) 559
Eco88I CYCGRG 2 cut(s) 793, 841
EcoICRI GAGCTC 2 cut(s) 1075, 1443
EcoO109I RGGNCCY 3 cut(s) 48, 353, 1546
EcoRII CCWGG 1 cut(s) 374
EcoT14I CCWWGG 2 cut(s) 291, 2283
EcoT38I GRGCYC 5 cut(s) 840, 1077, 1445, 1452, 1550
ErhI CCWWGG 2 cut(s) 291, 2283
Esp3I CGTCTC 1 cut(s) 1104
FaeI CATG 8 cut(s) 533, 643, 829, 970, 1081, 2030, 2146, 2287
FaqI GGGAC 2 cut(s) 34, 492
FatI CATG 8 cut(s) 529, 639, 825, 966, 1077, 2026, 2142, 2283
FauI CCCGC 5 cut(s) 13, 257, 469, 1083, 1459
FbaI TGATCA 1 cut(s) 2029
FblI GTMKAC 1 cut(s) 785
FokI GGATG 6 cut(s) 335, 757, 1597, 1819, 1827, 2107
FriOI GRGCYC 5 cut(s) 840, 1077, 1445, 1452, 1550
FspAI RTGCGCAY 1 cut(s) 1857
FspI TGCGCA 1 cut(s) 1857
GlaI GCGC 5 cut(s) 297, 475, 1230, 1491, 1857
GsuI CTGGAG 3 cut(s) 51, 358, 1118
HaeII RGCGCY 2 cut(s) 299, 1493
HgaI GACGC 7 cut(s) 90, 126, 269, 347, 489, 1028, 1121
HhaI GCGC 5 cut(s) 298, 476, 1231, 1492, 1858
Hin1I GRCGYC 3 cut(s) 101, 137, 481
Hin1II CATG 8 cut(s) 533, 643, 829, 970, 1081, 2030, 2146, 2287
Hin6I GCGC 5 cut(s) 296, 474, 1229, 1490, 1856
HinP1I GCGC 5 cut(s) 296, 474, 1229, 1490, 1856
HincII GTYRAC 2 cut(s) 763, 786
HindII GTYRAC 2 cut(s) 763, 786
HinfI GANTC 5 cut(s) 196, 673, 844, 1081, 1532
HpaI GTTAAC 1 cut(s) 763
HphI GGTGA 5 cut(s) 187, 657, 1381, 1666, 2027
Hpy166II GTNNAC 6 cut(s) 442, 580, 763, 786, 1183, 2267
Hpy188I TCNGA 9 cut(s) 316, 600, 659, 849, 1404, 1447, 1542, 1903, 2223
Hpy8I GTNNAC 6 cut(s) 442, 580, 763, 786, 1183, 2267
HpyAV CCTTC 9 cut(s) 340, 461, 738, 824, 1468, 1537, 1645, 1651, 2002
HpyCH4III ACNGT 2 cut(s) 1864, 2264
HpyCH4IV ACGT 7 cut(s) 438, 558, 759, 1179, 1185, 1332, 1694
HpyF3I CTNAG 1 cut(s) 1308
HpySE526I ACGT 7 cut(s) 438, 558, 759, 1179, 1185, 1332, 1694
Hsp92I GRCGYC 3 cut(s) 101, 137, 481
Hsp92II CATG 8 cut(s) 533, 643, 829, 970, 1081, 2030, 2146, 2287
HspAI GCGC 5 cut(s) 296, 474, 1229, 1490, 1856
KflI GGGWCCC 1 cut(s) 48
KpnI GGTACC 2 cut(s) 1397, 1528
Ksp22I TGATCA 1 cut(s) 2029
KspAI GTTAAC 1 cut(s) 763
KspI CCGCGG 1 cut(s) 171
Kzo9I GATC 5 cut(s) 238, 1898, 1918, 2029, 2125
LmnI GCTCC 6 cut(s) 26, 109, 1003, 1195, 1440, 1448
LweI GCATC 6 cut(s) 217, 313, 939, 1463, 1675, 1708
MaeII ACGT 7 cut(s) 438, 558, 759, 1179, 1185, 1332, 1694
MaeIII GTNAC 2 cut(s) 632, 663
MalI GATC 5 cut(s) 240, 1900, 1920, 2031, 2127
MbiI CCGCTC 1 cut(s) 1090
MboI GATC 5 cut(s) 238, 1898, 1918, 2029, 2125
MhlI GDGCHC 8 cut(s) 582, 840, 1071, 1077, 1445, 1452, 1550, 2269
MlsI TGGCCA 1 cut(s) 1149
MluCI AATT 5 cut(s) 389, 428, 714, 1140, 1942
MluNI TGGCCA 1 cut(s) 1149
MlyI GAGTC 4 cut(s) 190, 853, 1090, 1541
MmeI TCCRAC 5 cut(s) 19, 798, 827, 1427, 2074
Mox20I TGGCCA 1 cut(s) 1149
MroXI GAANNNNTTC 1 cut(s) 438
MscI TGGCCA 1 cut(s) 1149
MseI TTAA 1 cut(s) 762
MslI CAYNNNNRTG 2 cut(s) 752, 1931
Msp20I TGGCCA 1 cut(s) 1149
MspA1I CMGCKG 5 cut(s) 20, 121, 170, 264, 1770
MspR9I CCNGG 5 cut(s) 376, 573, 794, 795, 1054
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 8 cut(s) 170, 236, 280, 336, 474, 476, 1065, 1229
NciI CCSGG 4 cut(s) 573, 794, 795, 1054
NcoI CCATGG 1 cut(s) 2283
NdeII GATC 5 cut(s) 238, 1898, 1918, 2029, 2125
NheI GCTAGC 2 cut(s) 1424, 1486
NlaIII CATG 8 cut(s) 533, 643, 829, 970, 1081, 2030, 2146, 2287
NlaIV GGNNCC 8 cut(s) 49, 50, 259, 355, 535, 1395, 1526, 1548
NmeAIII GCCGAG 1 cut(s) 1545
NmuCI GTSAC 1 cut(s) 663
NruI TCGCGA 1 cut(s) 1065
NsbI TGCGCA 1 cut(s) 1857
NspI RCATGY 1 cut(s) 970
NspV TTCGAA 1 cut(s) 432
OliI CACNNNNGTG 1 cut(s) 1931
PaeI GCATGC 1 cut(s) 970
PaeR7I CTCGAG 1 cut(s) 841
PagI TCATGA 1 cut(s) 1077
PcsI WCGNNNNNNNCGW 4 cut(s) 810, 813, 2169, 2240
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 673
PflFI GACNNNGTC 1 cut(s) 199
PflMI CCANNNNNTGG 1 cut(s) 124
PfoI TCCNGGA 2 cut(s) 374, 571
PinAI ACCGGT 1 cut(s) 1366
PleI GAGTC 4 cut(s) 190, 852, 1089, 1540
PmaCI CACGTG 1 cut(s) 559
PmlI CACGTG 1 cut(s) 559
PpsI GAGTC 4 cut(s) 190, 852, 1089, 1540
Ppu21I YACGTR 1 cut(s) 559
PpuMI RGGWCCY 1 cut(s) 48
Psp124BI GAGCTC 2 cut(s) 1077, 1445
Psp1406I AACGTT 1 cut(s) 438
Psp5II RGGWCCY 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 374
PspCI CACGTG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 8 cut(s) 49, 50, 259, 355, 535, 1395, 1526, 1548
PspOMI GGGCCC 1 cut(s) 1546
PspPPI RGGWCCY 1 cut(s) 48
PspXI VCTCGAGB 1 cut(s) 841
PsrI GAACNNNNNNTAC 2 cut(s) 1377, 1409
PsyI GACNNNGTC 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 121
RruI TCGCGA 1 cut(s) 1065
RseI CAYNNNNRTG 2 cut(s) 752, 1931
SacI GAGCTC 2 cut(s) 1077, 1445
SacII CCGCGG 1 cut(s) 171
SalI GTCGAC 1 cut(s) 784
SaqAI TTAA 1 cut(s) 762
Sau3AI GATC 5 cut(s) 238, 1898, 1918, 2029, 2125
ScaI AGTACT 2 cut(s) 874, 1643
SchI GAGTC 4 cut(s) 190, 853, 1090, 1541
ScrFI CCNGG 5 cut(s) 376, 573, 794, 795, 1054
SduI GDGCHC 8 cut(s) 582, 840, 1071, 1077, 1445, 1452, 1550, 2269
SfaNI GCATC 6 cut(s) 217, 313, 939, 1463, 1675, 1708
SfcI CTRYAG 1 cut(s) 741
Sfr274I CTCGAG 1 cut(s) 841
Sfr303I CCGCGG 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 432
SgrBI CCGCGG 1 cut(s) 171
SinI GGWCC 4 cut(s) 48, 258, 312, 1538
SlaI CTCGAG 1 cut(s) 841
SmaI CCCGGG 1 cut(s) 795
SmiMI CAYNNNNRTG 2 cut(s) 752, 1931
SmlI CTYRAG 2 cut(s) 841, 1514
SmoI CTYRAG 2 cut(s) 841, 1514
SpeI ACTAGT 2 cut(s) 875, 887
SphI GCATGC 1 cut(s) 970
Sse9I AATT 5 cut(s) 389, 428, 714, 1140, 1942
SspI AATATT 2 cut(s) 449, 1420
SstI GAGCTC 2 cut(s) 1077, 1445
StyD4I CCNGG 5 cut(s) 374, 571, 792, 793, 1052
StyI CCWWGG 2 cut(s) 291, 2283
TaaI ACNGT 2 cut(s) 1864, 2264
TaiI ACGT 7 cut(s) 441, 561, 762, 1182, 1188, 1335, 1697
TaqI TCGA 5 cut(s) 241, 432, 785, 842, 927
TaqII GACCGA 1 cut(s) 601
TasI AATT 5 cut(s) 389, 428, 714, 1140, 1942
TatI WGTACW 2 cut(s) 872, 1641
TfiI GAWTC 1 cut(s) 673
Tru1I TTAA 1 cut(s) 762
Tru9I TTAA 1 cut(s) 762
TscAI CASTG 2 cut(s) 715, 1869
TseFI GTSAC 1 cut(s) 663
Tsp45I GTSAC 1 cut(s) 663
TspDTI ATGAA 4 cut(s) 237, 953, 1821, 2190
TspGWI ACGGA 2 cut(s) 78, 1200
TspMI CCCGGG 1 cut(s) 793
TspRI CASTG 2 cut(s) 715, 1869
Tth111I GACNNNGTC 1 cut(s) 199
Van91I CCANNNNNTGG 1 cut(s) 124
VneI GTGCAC 2 cut(s) 578, 2265
VpaK11BI GGWCC 4 cut(s) 48, 258, 312, 1538
XapI RAATTY 2 cut(s) 428, 1942
XbaI TCTAGA 2 cut(s) 982, 1463
XceI RCATGY 1 cut(s) 970
XcmI CCANNNNNNNNNTGG 1 cut(s) 1142
XhoI CTCGAG 1 cut(s) 841
XmaI CCCGGG 1 cut(s) 793
XmiI GTMKAC 1 cut(s) 785
XmnI GAANNNNTTC 1 cut(s) 438
ZrmI AGTACT 2 cut(s) 874, 1643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.