Rroxscaffold_3G00266720
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006309
Physical Location & Seq
Forward (+)
59920343 .. 59924936
4594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00266720.1

Sequence Viewer

Length: 888 bp
ATGGCCGTGCCGGAGCAACAGGTGGCACCGCCACAGGAGAATGTAGTCGGTAGTGGAGGAGGTTTTGAGGCAACAACCTCATCTTCGAGGTGGCCCAAGGCGGAAGTTCTTGCACTGATAAAGCTGAGGAGCGGACTGGAGACTAGGTATCAAGAGGCTGGGCCGAAAGGCCCACTTTGGGAGGAGATTTCTGCAGGGATGCAGCGAATGGGGTACAAGAGGAATCCCAAGAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAGAGCAACAAGGCCAGGCCCGAAGATGCGAAAACGTGTCCTTATTTTCACGAACTTGATGCACTCTACCGGAAAAGGATACTCGGCGGTGGAAGCAGCAGTTCATTGGGTAATCAGAATATCCAACAACAAGCACCGGCTACTCAAGGGACAGTAGCAGCTACTGTGCCTGCACCACAAACACAAGGAACAGTAGCAGCTGCTACTGATGAATCGGGAAACAAGAGTGGTGATCATAGCCCAAATCTGCAAAAGAATCTCTTTGGAGATGCACCCGAAGAGGCAGCCAAGAAGCCAGAAGACATTGTGAAGGAGTTGATGGGGCAACAGCAACAACAACATCATCATCCACAACAAGTACTCAACCAACAAGGGGTACAGCAGCAATTAGTAGTAGAAGACTATGATAGAGTTGAGGAAGCTGACAGCGACATCAATCTCGATCAAGATGAGGAGGAAGATGAAGATGACGAAGAGGATGAAGAAATGGATGAGGAGAGCAGGAAGATGGATTATAAGATTGAGTTTCAGAAGCAACAGAATACAGGCCCTTCATCCAATGGGGGAGGCAATGGGGCGCCCTCCTTCTTGGCAATGGTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006275 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008156 GO:0008361 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010026 GO:0010035 GO:0010090 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0030308 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031668 GO:0032502 GO:0032535 GO:0032774 GO:0032875 GO:0032876 GO:0032989 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0040008 GO:0042221 GO:0042631 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045786 GO:0045892 GO:0045926 GO:0045934 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048580 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090066 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0097159 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000037 GO:2000038 GO:2000104 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

295

Amino Acids

32.66

Weight (kDa)

4.82

Isoelectric Point (pI)

69.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 29 - 116 2.9e-26 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
AccB1I GGYRCC 2 cut(s) 25, 859
AccBSI CCGCTC 1 cut(s) 132
AciI CCGC 4 cut(s) 29, 101, 132, 369
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 860
AfaI GTAC 4 cut(s) 215, 266, 642, 660
AfiI CCNNNNNNNGG 2 cut(s) 178, 655
AflIII ACRYGT 1 cut(s) 317
AgsI TTSAA 2 cut(s) 271, 884
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 4 cut(s) 124, 443, 482, 704
AluI AGCT 4 cut(s) 124, 443, 482, 704
Alw26I GTCTC 1 cut(s) 134
AlwNI CAGNNNCTG 1 cut(s) 446
AoxI GGCC 7 cut(s) 3, 92, 161, 169, 294, 299, 829
ApeKI GCWGC 7 cut(s) 202, 378, 440, 479, 482, 566, 664
AspLEI GCGC 1 cut(s) 862
AspS9I GGNCC 5 cut(s) 93, 161, 170, 300, 830
AsuHPI GGTGA 1 cut(s) 524
BanI GGYRCC 2 cut(s) 25, 859
BbsI GAAGAC 2 cut(s) 588, 687
BbvCI CCTCAGC 1 cut(s) 125
BbvI GCAGC 7 cut(s) 214, 390, 452, 469, 491, 578, 676
BccI CCATC 2 cut(s) 595, 784
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciT130I CCWGG 1 cut(s) 298
BciVI GTATCC 1 cut(s) 354
BclI TGATCA 1 cut(s) 514
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 863
BfuI GTATCC 1 cut(s) 354
BisI GCNGC 7 cut(s) 203, 379, 441, 480, 483, 567, 665
BlsI GCNGC 7 cut(s) 204, 380, 442, 481, 484, 568, 666
BmcAI AGTACT 2 cut(s) 266, 642
Bme1390I CCNGG 1 cut(s) 298
BmgT120I GGNCC 5 cut(s) 93, 161, 170, 300, 830
BmiI GGNNCC 2 cut(s) 27, 861
BmrFI CCNGG 1 cut(s) 298
BmsI GCATC 4 cut(s) 189, 298, 331, 541
BpiI GAAGAC 2 cut(s) 588, 687
BpmI CTGGAG 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 860
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 655
Bse118I RCCGGY 1 cut(s) 418
Bse1I ACTGG 1 cut(s) 141
Bse3DI GCAATG 2 cut(s) 859, 882
BseBI CCWGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 5 cut(s) 204, 628, 766, 778, 836
BseLI CCNNNNNNNGG 2 cut(s) 178, 655
BseMI GCAATG 2 cut(s) 859, 882
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 141
BseRI GAGGAG 5 cut(s) 72, 142, 197, 749, 791
BseXI GCAGC 7 cut(s) 214, 390, 452, 469, 491, 578, 676
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 438
BshFI GGCC 7 cut(s) 5, 94, 163, 171, 296, 301, 831
BshNI GGYRCC 2 cut(s) 25, 859
BsiSI CCGG 3 cut(s) 11, 352, 419
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 2 cut(s) 178, 655
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 445
BsnI GGCC 7 cut(s) 5, 94, 163, 171, 296, 301, 831
Bsp143I GATC 2 cut(s) 514, 724
BspACI CCGC 4 cut(s) 29, 101, 132, 369
BspANI GGCC 7 cut(s) 5, 94, 163, 171, 296, 301, 831
BspCNI CTCAG 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 27, 861
BspMAI CTGCAG 1 cut(s) 196
BspT107I GGYRCC 2 cut(s) 25, 859
BsrBI CCGCTC 1 cut(s) 132
BsrDI GCAATG 2 cut(s) 859, 882
BsrFI RCCGGY 1 cut(s) 418
BsrI ACTGG 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 418
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 2 cut(s) 514, 724
BssNI GRCGYC 1 cut(s) 860
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 3 cut(s) 436, 448, 475
Bst6I CTCTTC 2 cut(s) 555, 750
BstACI GRCGYC 1 cut(s) 860
BstC8I GCNNGC 1 cut(s) 453
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 5 cut(s) 204, 628, 766, 778, 836
BstH2I RGCGCY 1 cut(s) 863
BstHHI GCGC 1 cut(s) 862
BstKTI GATC 2 cut(s) 517, 727
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 514, 724
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNI CCWGG 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 296
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 7 cut(s) 214, 390, 452, 469, 491, 578, 676
BstV2I GAAGAC 2 cut(s) 588, 687
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 7 cut(s) 5, 94, 163, 171, 296, 301, 831
BtsCI GGATG 5 cut(s) 204, 628, 766, 778, 836
BtsIMutI CAGTG 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 453
CaiI CAGNNNCTG 1 cut(s) 446
CfoI GCGC 1 cut(s) 862
Cfr10I RCCGGY 1 cut(s) 418
Cfr13I GGNCC 5 cut(s) 93, 161, 170, 300, 830
Csp6I GTAC 4 cut(s) 214, 265, 641, 659
CviQI GTAC 4 cut(s) 214, 265, 641, 659
DdeI CTNAG 1 cut(s) 125
DinI GGCGCC 1 cut(s) 861
DpnI GATC 2 cut(s) 516, 726
DpnII GATC 2 cut(s) 514, 724
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 555, 750
EarI CTCTTC 2 cut(s) 555, 750
EciI GGCGGA 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 830
EcoRII CCWGG 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 96
EgeI GGCGCC 1 cut(s) 861
EheI GGCGCC 1 cut(s) 861
ErhI CCWWGG 1 cut(s) 96
FaiI YATR 3 cut(s) 519, 687, 798
FalI AAGNNNNNCTT 4 cut(s) 159, 191, 527, 559
FaqI GGGAC 1 cut(s) 445
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 7 cut(s) 203, 379, 441, 480, 483, 567, 665
FokI GGATG 5 cut(s) 211, 615, 773, 785, 823
Fsp4HI GCNGC 7 cut(s) 203, 379, 441, 480, 483, 567, 665
FspBI CTAG 1 cut(s) 144
GlaI GCGC 1 cut(s) 861
GluI GCNGC 7 cut(s) 203, 379, 441, 480, 483, 567, 665
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 158
HaeII RGCGCY 1 cut(s) 863
HaeIII GGCC 7 cut(s) 5, 94, 163, 171, 296, 301, 831
HapII CCGG 3 cut(s) 11, 352, 419
HhaI GCGC 1 cut(s) 862
Hin1I GRCGYC 1 cut(s) 860
Hin6I GCGC 1 cut(s) 860
HinP1I GCGC 1 cut(s) 860
HinfI GANTC 3 cut(s) 223, 494, 538
HpaII CCGG 3 cut(s) 11, 352, 419
HphI GGTGA 1 cut(s) 524
Hpy188I TCNGA 2 cut(s) 399, 813
Hpy188III TCNNGA 6 cut(s) 152, 271, 332, 498, 722, 728
HpyAV CCTTC 4 cut(s) 274, 586, 843, 877
HpyCH4III ACNGT 3 cut(s) 436, 448, 475
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 8 cut(s) 113, 194, 202, 237, 344, 455, 532, 554
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 317
Hsp92I GRCGYC 1 cut(s) 860
HspAI GCGC 1 cut(s) 860
KasI GGCGCC 1 cut(s) 859
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 2 cut(s) 514, 724
LmnI GCTCC 2 cut(s) 13, 129
Lsp1109I GCAGC 7 cut(s) 214, 390, 452, 469, 491, 578, 676
LweI GCATC 4 cut(s) 189, 298, 331, 541
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 317
MalI GATC 2 cut(s) 516, 726
MbiI CCGCTC 1 cut(s) 132
MboI GATC 2 cut(s) 514, 724
MluCI AATT 1 cut(s) 668
Mly113I GGCGCC 1 cut(s) 860
MmeI TCCRAC 1 cut(s) 430
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 3 cut(s) 11, 352, 419
MspR9I CCNGG 1 cut(s) 298
MvaI CCWGG 1 cut(s) 298
MwoI GCNNNNNNNGC 1 cut(s) 375
NarI GGCGCC 1 cut(s) 860
NdeII GATC 2 cut(s) 514, 724
NlaIV GGNNCC 2 cut(s) 27, 861
NmeAIII GCCGAG 1 cut(s) 345
PfeI GAWTC 3 cut(s) 223, 494, 538
PkrI GCNGC 7 cut(s) 204, 380, 442, 481, 484, 568, 666
PluTI GGCGCC 1 cut(s) 863
PsiI TTATAA 1 cut(s) 798
Psp6I CCWGG 1 cut(s) 296
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 2 cut(s) 27, 861
PspPI GGNCC 5 cut(s) 93, 161, 170, 300, 830
PstI CTGCAG 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 446
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 4 cut(s) 215, 266, 642, 660
RsaNI GTAC 4 cut(s) 214, 265, 641, 659
SatI GCNGC 7 cut(s) 203, 379, 441, 480, 483, 567, 665
Sau3AI GATC 2 cut(s) 514, 724
Sau96I GGNCC 5 cut(s) 93, 161, 170, 300, 830
ScaI AGTACT 2 cut(s) 266, 642
ScrFI CCNGG 1 cut(s) 298
SfaNI GCATC 4 cut(s) 189, 298, 331, 541
SfcI CTRYAG 1 cut(s) 192
SfoI GGCGCC 1 cut(s) 861
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
Sse9I AATT 1 cut(s) 668
SsiI CCGC 4 cut(s) 29, 101, 132, 369
SspDI GGCGCC 1 cut(s) 859
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 296
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 3 cut(s) 436, 448, 475
TaiI ACGT 1 cut(s) 320
TaqI TCGA 2 cut(s) 86, 723
TasI AATT 1 cut(s) 668
TatI WGTACW 2 cut(s) 264, 640
TfiI GAWTC 3 cut(s) 223, 494, 538
TscAI CASTG 1 cut(s) 120
TseI GCWGC 7 cut(s) 202, 378, 440, 479, 482, 566, 664
TspDTI ATGAA 5 cut(s) 375, 507, 759, 777, 825
TspRI CASTG 1 cut(s) 120
XspI CTAG 1 cut(s) 144
ZrmI AGTACT 2 cut(s) 266, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.