Prupe.5G137600_v2.0.a1
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0006309
Physical Location & Seq
Reverse (-)
12968715 .. 12973735
5021 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G137600.1

Sequence Viewer

Length: 2331 bp
ATGCAGCAAGGAGCTGGAGGGGCCCAAACCCATTATGGAGTTGGGGCAGCTGAAGACATGGGAGCTTCTGCTGCTGCTGCTGCTGCTGGTCCTTCTTCTTCCATGGCAGCCGCAGCAGCAGAAGCTGGAGACCAAGCCCAGCTAGTAGAAGCAGCCTCGCCAATCAGCAGCAGGCCTCCTGCTTCCGCTTCTGTCAATCTGGACGAGCTCATGACTCTCTCTGGAGCAGCTGCTGCAGCTGAAGACGCTCTCGCTGCTTCGAGAGACGAAGCAGATCGCGGTGGCGGTGGCGTTGGGTCGAGCGGCAACAGGTGGCCGCGCCAAGAAACCTTGGCCCTTCTCAAAATCAGGTCAGAGATGGATGTGTCCTTCCGCGACGCGACCCTCAAAGGCCCCTTGTGGGAAGATGTTTCCAGGAAGCTAGCGGAGTTGGGGTACAAAAGAAGTGCCAAGAAATGCAAGGAGAAATTCGAGAACGTGCACAAGTATTACAAGCGGACCAAAGAAGGCCGCGCGGGTCGTCAAGACGGCAAGAGCTACAAGTTCTTCAGTGAGCTAGAGGCTCTACACGGCACCACCGCCGCCACGTCCTCAGTCAACGTGTCAGCCTCTCCCTCTATCCACGTCACCCACGCTTCCCCTAACCCGGTTTCTATCGGGTTCAGCAACCCCATGCCCATCTCATCCTTCAGAATGTCACCCACAATTCCCGTAATGCCCTCCCAACAACCTCCCGCTACATTTCCAGTAATGCCCTCCTCCCAACCGCCACAGACAGCAGCAACAACGGCCACTCCAATGGACATAAACTTTTCTTCCAACAGCTCGTCTTCGTCCCCGGGGACCGACGACGAGGACGACGATGATGACGTGGAAGGAGAGCCTTCGAGTCGAAAACGGAAGAGAGGGGGTGCTAGTACTAGCGGCAGCGGCAGCACCAGAAAAATGATGGAGTTTTTCGAGGTCCTGATGAAGCAGGTGATGCAGAAGCAAGAGACCATGCAGCAGAGGTTTCTAGAAGTAATAGAGAAGAGGGAGCAGGACAGGACCATAAGGGAAGAGGCGTGGAAGCGTCAGGAGATGGCTCGGCTGACTCGGGAGCACGAGCTCATGAGCCAAGAGCGAGCCATCTCCGCGTCCAGAGACGCCGCCATCATCTCTTTTCTGCAGAAAATTACTGGTCAGACCATCCAACTACCTCCGCCCGTCAACGTCCACTCCGCTCCGCCGCCACCTGTCCCTCCGTCGGTGCCGGTTGTCACGCCGTTGGCTCAGCAATCGGTACAGCCGCCGATACAGACATCGTATCATCAAACGACGCCGCAGCAGCAACAGCCTCCGCAGCAACAACACGGGCAACAGGTTCGTCACCATCAGCAGCAGTCGCAGAATCTTCAGGTGGTGATGGCTGTACCGGAGCAGCAGGTGCAGCCTCCGCAAGAGAATATTGCTAGCGGAGGAGGAGCAGGAGGGAGCTTAGAACCTGCGTCGTCTTCGAGATGGCCCAAGGCGGAGGTGCTTGCACTGATAAAGTTGAGAAGTGGGCTCGAGTCGAGGTACCAAGAGGCGGGGCCGAAGGGTCCACTTTGGGAGGAGATTTCGGCTGGGATGGGGCGGATGGGGTACAAGAGGAGTTCCAAGAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAATAAGAAGCGGCCCGAGGACGCGAAAACATGTCCATATTTTCATGAACTTGATGCTCTTTACCGGAAAAGGATACTCGGCGGCGGCGGTGGAGGCGGCAGCAGCAGCTCATTGGGTAACCAGAACAGGCTGGAACAACCACAGCAACATCAACTGCAGCTGGAGAACCCGAAATCAGATTCGGCAACGCAGCCGCAAGATAGGAGCTTAGAGGCCCAACCAAGTGTGCCTGTAATGCCACAAACACAAGAGGCAGTGGTAGCTACTGATCAGTCAGAAAACAAGAACGGAGATCAAAGCGCAAATGTGGAAAATCTCTTTGGAGAGGCAACAGATGAGGCAGCCAAGAAGCCAGAAGACATTGTGAAGGAGTTGATGCAGCAGGAGGTGCATGATCATCTTCAACAATTAGCGGTAGATGACTATGATAGGATTGAGGAAGCCAATAGCGACAATATTATGGATCAAGAGGAGGACATGGAAGACGATGATATCGATGAAGAAGACGATGAGGAAATGGAAGAAGAGAGGAAGATGGCTTATAAGATAGAGTTTCAGAAACCGAACACAACAGGCCCGTCCTCTAATGGGGGAGGCAATGGGGCTGCCTCATTCTTGGCCATGGTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006275 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008156 GO:0008361 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010026 GO:0010035 GO:0010090 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0030308 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031668 GO:0032502 GO:0032535 GO:0032774 GO:0032875 GO:0032876 GO:0032989 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0040008 GO:0042221 GO:0042631 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045786 GO:0045892 GO:0045926 GO:0045934 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048580 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090066 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0097159 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000037 GO:2000038 GO:2000104 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

777

Amino Acids

84.46

Weight (kDa)

5.26

Isoelectric Point (pI)

70.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2241
AarI CACCTGC 2 cut(s) 967, 1414
Acc36I ACCTGC 3 cut(s) 967, 1414, 1492
Acc65I GGTACC 1 cut(s) 1557
AccB1I GGYRCC 3 cut(s) 572, 1249, 1557
AccBSI CCGCTC 2 cut(s) 303, 1223
AccII CGCG 8 cut(s) 279, 319, 375, 380, 513, 515, 1136, 1721
AclWI GGATC 1 cut(s) 2169
AcoI YGGCCR 3 cut(s) 314, 789, 2316
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 5 cut(s) 72, 261, 532, 673, 1379
AcyI GRCGYC 2 cut(s) 1146, 1319
AfaI GTAC 7 cut(s) 437, 919, 1284, 1413, 1559, 1625, 1676
AfiI CCNNNNNNNGG 5 cut(s) 400, 646, 1246, 1567, 2286
AflIII ACRYGT 2 cut(s) 600, 1727
AgsI TTSAA 3 cut(s) 1681, 2102, 2327
AjiI CACGTC 3 cut(s) 588, 625, 871
AjnI CCWGG 1 cut(s) 413
AjuI GAANNNNNNNTTGG 2 cut(s) 2001, 2033
Alw21I GWGCWC 4 cut(s) 210, 483, 1104, 1110
Alw26I GTCTC 4 cut(s) 123, 258, 989, 1137
Alw44I GTGCAC 1 cut(s) 479
AlwI GGATC 1 cut(s) 2169
AlwNI CAGNNNCTG 2 cut(s) 125, 233
Ama87I CYCGRG 4 cut(s) 838, 1095, 1547, 1712
ApaI GGGCCC 1 cut(s) 25
ApaLI GTGCAC 1 cut(s) 479
ApoI RAATTY 1 cut(s) 467
Asp718I GGTACC 1 cut(s) 1557
AspLEI GCGC 3 cut(s) 321, 515, 2000
AsuC2I CCSGG 3 cut(s) 647, 839, 840
AsuHPI GGTGA 6 cut(s) 619, 690, 991, 1361, 1414, 1699
AsuNHI GCTAGC 2 cut(s) 421, 1451
AvaI CYCGRG 4 cut(s) 838, 1095, 1547, 1712
AvaII GGWCC 6 cut(s) 89, 498, 843, 964, 1047, 1580
BaeGI GKGCMC 2 cut(s) 25, 483
BalI TGGCCA 1 cut(s) 2318
BanI GGYRCC 3 cut(s) 572, 1249, 1557
BanII GRGCYC 4 cut(s) 25, 210, 1110, 1548
BauI CACGAG 1 cut(s) 1103
BbsI GAAGAC 7 cut(s) 60, 249, 822, 1485, 2061, 2187, 2208
Bbv12I GWGCWC 4 cut(s) 210, 483, 1104, 1110
BceAI ACGGC 4 cut(s) 544, 586, 804, 1249
BcgI CGANNNNNNTGC 2 cut(s) 1346, 1380
BciT130I CCWGG 1 cut(s) 415
BciVI GTATCC 1 cut(s) 1764
BclI TGATCA 2 cut(s) 1966, 2092
BcnI CCSGG 3 cut(s) 647, 839, 840
BcoDI GTCTC 4 cut(s) 123, 258, 989, 1137
BfaI CTAG 7 cut(s) 143, 422, 557, 915, 921, 1016, 1452
BfmI CTRYAG 3 cut(s) 234, 1166, 1853
BfuAI ACCTGC 3 cut(s) 967, 1414, 1492
BfuI GTATCC 1 cut(s) 1764
BlpI GCTNAGC 1 cut(s) 1272
BmcAI AGTACT 2 cut(s) 919, 1676
Bme1390I CCNGG 4 cut(s) 415, 647, 839, 840
Bme18I GGWCC 6 cut(s) 89, 498, 843, 964, 1047, 1580
BmeT110I CYCGRG 4 cut(s) 838, 1095, 1547, 1712
BmgBI CACGTC 3 cut(s) 588, 625, 871
BmiI GGNNCC 9 cut(s) 22, 23, 394, 574, 844, 1251, 1559, 1572, 1581
BmrFI CCNGG 4 cut(s) 415, 647, 839, 840
BmsI GCATC 4 cut(s) 972, 1634, 1741, 2064
BmtI GCTAGC 2 cut(s) 425, 1455
BpiI GAAGAC 7 cut(s) 60, 249, 822, 1485, 2061, 2187, 2208
BpmI CTGGAG 4 cut(s) 36, 147, 243, 1880
Bpu1102I GCTNAGC 1 cut(s) 1272
BpuMI CCSGG 3 cut(s) 647, 839, 840
Bsa29I ATCGAT 1 cut(s) 2193
BsaHI GRCGYC 2 cut(s) 1146, 1319
BsaI GGTCTC 2 cut(s) 123, 989
BsaJI CCNNGG 8 cut(s) 102, 330, 837, 838, 839, 1506, 1713, 2319
BsaWI WCCGGW 2 cut(s) 1414, 1761
BsaXI ACNNNNNCTCC 6 cut(s) 419, 449, 778, 808, 1202, 1232
Bsc4I CCNNNNNNNGG 5 cut(s) 400, 646, 1246, 1567, 2286
Bse118I RCCGGY 1 cut(s) 1252
Bse1I ACTGG 2 cut(s) 746, 1183
Bse3DI GCAATG 1 cut(s) 2302
BseBI CCWGG 1 cut(s) 415
BseCI ATCGAT 1 cut(s) 2193
BseDI CCNNGG 8 cut(s) 102, 330, 837, 838, 839, 1506, 1713, 2319
BseGI GGATG 5 cut(s) 367, 683, 1188, 1614, 1623
BseLI CCNNNNNNNGG 5 cut(s) 400, 646, 1246, 1567, 2286
BseMI GCAATG 1 cut(s) 2302
BseMII CTCAG 2 cut(s) 606, 1286
BseNI ACTGG 2 cut(s) 746, 1183
BseRI GAGGAG 6 cut(s) 748, 1473, 1476, 1607, 1645, 2183
BseSI GKGCMC 2 cut(s) 25, 483
BseYI CCCAGC 2 cut(s) 138, 1604
BsgI GTGCAG 1 cut(s) 1448
Bsh1236I CGCG 8 cut(s) 279, 319, 375, 380, 513, 515, 1136, 1721
BshNI GGYRCC 3 cut(s) 572, 1249, 1557
BshVI ATCGAT 1 cut(s) 2193
BsiHKAI GWGCWC 4 cut(s) 210, 483, 1104, 1110
BsiHKCI CYCGRG 4 cut(s) 838, 1095, 1547, 1712
BsiSI CCGG 5 cut(s) 647, 839, 1253, 1415, 1762
BslFI GGGAC 3 cut(s) 820, 856, 1223
BslI CCNNNNNNNGG 5 cut(s) 400, 646, 1246, 1567, 2286
BsmAI GTCTC 4 cut(s) 123, 258, 989, 1137
BsmBI CGTCTC 2 cut(s) 258, 1137
BsmFI GGGAC 3 cut(s) 820, 856, 1223
Bso31I GGTCTC 2 cut(s) 123, 989
BsoBI CYCGRG 4 cut(s) 838, 1095, 1547, 1712
Bsp120I GGGCCC 1 cut(s) 21
Bsp1286I GDGCHC 6 cut(s) 25, 210, 483, 1104, 1110, 1548
Bsp143I GATC 5 cut(s) 274, 1966, 1990, 2092, 2161
Bsp1720I GCTNAGC 1 cut(s) 1272
Bsp19I CCATGG 2 cut(s) 102, 2319
BspCNI CTCAG 2 cut(s) 605, 1285
BspDI ATCGAT 1 cut(s) 2193
BspFNI CGCG 8 cut(s) 279, 319, 375, 380, 513, 515, 1136, 1721
BspHI TCATGA 3 cut(s) 210, 1110, 1741
BspLI GGNNCC 9 cut(s) 22, 23, 394, 574, 844, 1251, 1559, 1572, 1581
BspMAI CTGCAG 3 cut(s) 238, 1170, 1857
BspMI ACCTGC 3 cut(s) 967, 1414, 1492
BspOI GCTAGC 2 cut(s) 425, 1455
BspPI GGATC 1 cut(s) 2169
BspT107I GGYRCC 3 cut(s) 572, 1249, 1557
BspTNI GGTCTC 2 cut(s) 123, 989
BsrBI CCGCTC 2 cut(s) 303, 1223
BsrDI GCAATG 1 cut(s) 2302
BsrFI RCCGGY 1 cut(s) 1252
BsrI ACTGG 2 cut(s) 746, 1183
BssAI RCCGGY 1 cut(s) 1252
BssECI CCNNGG 8 cut(s) 102, 330, 837, 838, 839, 1506, 1713, 2319
BssMI GATC 5 cut(s) 274, 1966, 1990, 2092, 2161
BssNI GRCGYC 2 cut(s) 1146, 1319
BssSI CACGAG 1 cut(s) 1103
BssT1I CCWWGG 4 cut(s) 102, 330, 1506, 2319
Bst2BI CACGAG 1 cut(s) 1103
Bst2UI CCWGG 1 cut(s) 415
Bst6I CTCTTC 4 cut(s) 896, 1025, 1053, 2217
BstACI GRCGYC 2 cut(s) 1146, 1319
BstAPI GCANNNNNTGC 4 cut(s) 233, 982, 1426, 2086
BstC8I GCNNGC 5 cut(s) 173, 423, 1125, 1453, 1521
BstDEI CTNAG 4 cut(s) 592, 1272, 1477, 1906
BstDSI CCRYGG 2 cut(s) 102, 2319
BstEII GGTNACC 1 cut(s) 1814
BstF5I GGATG 5 cut(s) 367, 683, 1188, 1614, 1623
BstFNI CGCG 8 cut(s) 279, 319, 375, 380, 513, 515, 1136, 1721
BstHHI GCGC 3 cut(s) 321, 515, 2000
BstKTI GATC 5 cut(s) 277, 1969, 1993, 2095, 2164
BstMAI GTCTC 4 cut(s) 123, 258, 989, 1137
BstMBI GATC 5 cut(s) 274, 1966, 1990, 2092, 2161
BstNI CCWGG 1 cut(s) 415
BstNSI RCATGY 1 cut(s) 1731
BstPI GGTNACC 1 cut(s) 1814
BstSCI CCNGG 4 cut(s) 413, 645, 837, 838
BstSFI CTRYAG 3 cut(s) 234, 1166, 1853
BstSLI GKGCMC 2 cut(s) 25, 483
BstUI CGCG 8 cut(s) 279, 319, 375, 380, 513, 515, 1136, 1721
BstV2I GAAGAC 7 cut(s) 60, 249, 822, 1485, 2061, 2187, 2208
BstXI CCANNNNNNTGG 1 cut(s) 799
Bsu15I ATCGAT 1 cut(s) 2193
BsuI GTATCC 1 cut(s) 1764
BsuTUI ATCGAT 1 cut(s) 2193
BtgI CCRYGG 2 cut(s) 102, 2319
BtrI CACGTC 3 cut(s) 588, 625, 871
BtsCI GGATG 5 cut(s) 367, 683, 1188, 1614, 1623
BtsI GCAGTG 1 cut(s) 1959
BtsIMutI CAGTG 3 cut(s) 556, 1523, 1959
BveI ACCTGC 3 cut(s) 967, 1414, 1492
Cac8I GCNNGC 5 cut(s) 173, 423, 1125, 1453, 1521
CaiI CAGNNNCTG 2 cut(s) 125, 233
CciI TCATGA 3 cut(s) 210, 1110, 1741
CfoI GCGC 3 cut(s) 321, 515, 2000
Cfr10I RCCGGY 1 cut(s) 1252
Cfr9I CCCGGG 1 cut(s) 838
ClaI ATCGAT 1 cut(s) 2193
CseI GACGC 8 cut(s) 254, 386, 1061, 1125, 1154, 1327, 1476, 1727
Csp6I GTAC 7 cut(s) 436, 918, 1283, 1412, 1558, 1624, 1675
CviQI GTAC 7 cut(s) 436, 918, 1283, 1412, 1558, 1624, 1675
DdeI CTNAG 4 cut(s) 592, 1272, 1477, 1906
DpnI GATC 5 cut(s) 276, 1968, 1992, 2094, 2163
DpnII GATC 5 cut(s) 274, 1966, 1990, 2092, 2161
EaeI YGGCCR 3 cut(s) 314, 789, 2316
Eam1104I CTCTTC 4 cut(s) 896, 1025, 1053, 2217
EarI CTCTTC 4 cut(s) 896, 1025, 1053, 2217
EciI GGCGGA 4 cut(s) 1191, 1215, 1526, 1630
Ecl136II GAGCTC 2 cut(s) 208, 1108
Eco130I CCWWGG 4 cut(s) 102, 330, 1506, 2319
Eco147I AGGCCT 1 cut(s) 175
Eco24I GRGCYC 4 cut(s) 25, 210, 1110, 1548
Eco31I GGTCTC 2 cut(s) 123, 989
Eco32I GATATC 1 cut(s) 2191
Eco47I GGWCC 6 cut(s) 89, 498, 843, 964, 1047, 1580
Eco53kI GAGCTC 2 cut(s) 208, 1108
Eco57I CTGAAG 5 cut(s) 72, 261, 532, 673, 1379
Eco88I CYCGRG 4 cut(s) 838, 1095, 1547, 1712
Eco91I GGTNACC 1 cut(s) 1814
EcoICRI GAGCTC 2 cut(s) 208, 1108
EcoO109I RGGNCCY 3 cut(s) 21, 392, 964
EcoO65I GGTNACC 1 cut(s) 1814
EcoRII CCWGG 1 cut(s) 413
EcoRV GATATC 1 cut(s) 2191
EcoT14I CCWWGG 4 cut(s) 102, 330, 1506, 2319
EcoT38I GRGCYC 4 cut(s) 25, 210, 1110, 1548
ErhI CCWWGG 4 cut(s) 102, 330, 1506, 2319
Esp3I CGTCTC 2 cut(s) 258, 1137
FaqI GGGAC 3 cut(s) 820, 856, 1223
FauI CCCGC 3 cut(s) 508, 742, 1561
FbaI TGATCA 2 cut(s) 1966, 2092
FokI GGATG 5 cut(s) 374, 670, 1175, 1621, 1630
FriOI GRGCYC 4 cut(s) 25, 210, 1110, 1548
FspBI CTAG 7 cut(s) 143, 422, 557, 915, 921, 1016, 1452
GlaI GCGC 3 cut(s) 320, 514, 1999
GsaI CCCAGC 2 cut(s) 142, 1608
GsuI CTGGAG 4 cut(s) 36, 147, 243, 1880
HapII CCGG 5 cut(s) 647, 839, 1253, 1415, 1762
HgaI GACGC 8 cut(s) 254, 386, 1061, 1125, 1154, 1327, 1476, 1727
HhaI GCGC 3 cut(s) 321, 515, 2000
Hin1I GRCGYC 2 cut(s) 1146, 1319
Hin6I GCGC 3 cut(s) 319, 513, 1998
HinP1I GCGC 3 cut(s) 319, 513, 1998
HincII GTYRAC 2 cut(s) 598, 1210
HindII GTYRAC 2 cut(s) 598, 1210
HinfI GANTC 6 cut(s) 214, 889, 1093, 1390, 1550, 1877
HpaII CCGG 5 cut(s) 647, 839, 1253, 1415, 1762
HphI GGTGA 6 cut(s) 619, 690, 991, 1361, 1414, 1699
Hpy166II GTNNAC 5 cut(s) 481, 598, 1210, 1216, 1583
Hpy188I TCNGA 6 cut(s) 355, 692, 1185, 1876, 1975, 2256
Hpy8I GTNNAC 5 cut(s) 481, 598, 1210, 1216, 1583
Hpy99I CGWCG 7 cut(s) 380, 851, 854, 863, 1249, 1321, 1492
HpyCH4IV ACGT 6 cut(s) 477, 587, 600, 624, 870, 1212
HpyF3I CTNAG 4 cut(s) 592, 1272, 1477, 1906
HpySE526I ACGT 6 cut(s) 477, 587, 600, 624, 870, 1212
Hsp92I GRCGYC 2 cut(s) 1146, 1319
HspAI GCGC 3 cut(s) 319, 513, 1998
KpnI GGTACC 1 cut(s) 1561
Ksp22I TGATCA 2 cut(s) 1966, 2092
Kzo9I GATC 5 cut(s) 274, 1966, 1990, 2092, 2161
LweI GCATC 4 cut(s) 972, 1634, 1741, 2064
MaeI CTAG 7 cut(s) 143, 422, 557, 915, 921, 1016, 1452
MaeII ACGT 6 cut(s) 477, 587, 600, 624, 870, 1212
MaeIII GTNAC 5 cut(s) 625, 696, 1258, 1367, 1814
MalI GATC 5 cut(s) 276, 1968, 1992, 2094, 2163
MbiI CCGCTC 2 cut(s) 303, 1223
MboI GATC 5 cut(s) 274, 1966, 1990, 2092, 2161
MhlI GDGCHC 6 cut(s) 25, 210, 483, 1104, 1110, 1548
MlsI TGGCCA 1 cut(s) 2318
MluCI AATT 4 cut(s) 467, 705, 1173, 2105
MluNI TGGCCA 1 cut(s) 2318
MlyI GAGTC 4 cut(s) 208, 898, 1087, 1559
MmeI TCCRAC 2 cut(s) 843, 1216
Mox20I TGGCCA 1 cut(s) 2318
MscI TGGCCA 1 cut(s) 2318
MslI CAYNNNNRTG 1 cut(s) 797
Msp20I TGGCCA 1 cut(s) 2318
MspA1I CMGCKG 5 cut(s) 50, 230, 239, 930, 1858
MspI CCGG 5 cut(s) 647, 839, 1253, 1415, 1762
MspR9I CCNGG 4 cut(s) 415, 647, 839, 840
MvaI CCWGG 1 cut(s) 415
MvnI CGCG 8 cut(s) 279, 319, 375, 380, 513, 515, 1136, 1721
NciI CCSGG 3 cut(s) 647, 839, 840
NcoI CCATGG 2 cut(s) 102, 2319
NdeII GATC 5 cut(s) 274, 1966, 1990, 2092, 2161
NheI GCTAGC 2 cut(s) 421, 1451
NlaIV GGNNCC 9 cut(s) 22, 23, 394, 574, 844, 1251, 1559, 1572, 1581
NmeAIII GCCGAG 2 cut(s) 1066, 1755
NmuCI GTSAC 4 cut(s) 625, 696, 1258, 1367
NspI RCATGY 1 cut(s) 1731
PaeR7I CTCGAG 1 cut(s) 1547
PagI TCATGA 3 cut(s) 210, 1110, 1741
PaqCI CACCTGC 2 cut(s) 967, 1414
PceI AGGCCT 1 cut(s) 175
PciI ACATGT 1 cut(s) 1727
PcsI WCGNNNNNNNCGW 4 cut(s) 855, 858, 867, 2190
PfeI GAWTC 2 cut(s) 1390, 1877
PfoI TCCNGGA 1 cut(s) 413
PleI GAGTC 4 cut(s) 208, 897, 1087, 1558
PpsI GAGTC 4 cut(s) 208, 897, 1087, 1558
PpuMI RGGWCCY 1 cut(s) 964
PscI ACATGT 1 cut(s) 1727
PsiI TTATAA 1 cut(s) 2241
Psp124BI GAGCTC 2 cut(s) 210, 1110
Psp5II RGGWCCY 1 cut(s) 964
Psp6I CCWGG 1 cut(s) 413
PspEI GGTNACC 1 cut(s) 1814
PspFI CCCAGC 2 cut(s) 138, 1604
PspGI CCWGG 1 cut(s) 413
PspN4I GGNNCC 9 cut(s) 22, 23, 394, 574, 844, 1251, 1559, 1572, 1581
PspOMI GGGCCC 1 cut(s) 21
PspPPI RGGWCCY 1 cut(s) 964
PspXI VCTCGAGB 1 cut(s) 1547
PstI CTGCAG 3 cut(s) 238, 1170, 1857
PstNI CAGNNNCTG 2 cut(s) 125, 233
PvuII CAGCTG 4 cut(s) 50, 230, 239, 1858
RsaI GTAC 7 cut(s) 437, 919, 1284, 1413, 1559, 1625, 1676
RsaNI GTAC 7 cut(s) 436, 918, 1283, 1412, 1558, 1624, 1675
RseI CAYNNNNRTG 1 cut(s) 797
SacI GAGCTC 2 cut(s) 210, 1110
Sau3AI GATC 5 cut(s) 274, 1966, 1990, 2092, 2161
ScaI AGTACT 2 cut(s) 919, 1676
SchI GAGTC 4 cut(s) 208, 898, 1087, 1559
ScrFI CCNGG 4 cut(s) 415, 647, 839, 840
SduI GDGCHC 6 cut(s) 25, 210, 483, 1104, 1110, 1548
SfaNI GCATC 4 cut(s) 972, 1634, 1741, 2064
SfcI CTRYAG 3 cut(s) 234, 1166, 1853
Sfr274I CTCGAG 1 cut(s) 1547
SinI GGWCC 6 cut(s) 89, 498, 843, 964, 1047, 1580
SlaI CTCGAG 1 cut(s) 1547
SmaI CCCGGG 1 cut(s) 840
SmiMI CAYNNNNRTG 1 cut(s) 797
SmlI CTYRAG 1 cut(s) 1547
SmoI CTYRAG 1 cut(s) 1547
Sse9I AATT 4 cut(s) 467, 705, 1173, 2105
SseBI AGGCCT 1 cut(s) 175
SspI AATATT 2 cut(s) 1447, 2155
SspMI CTAG 7 cut(s) 143, 422, 557, 915, 921, 1016, 1452
SstI GAGCTC 2 cut(s) 210, 1110
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 4 cut(s) 413, 645, 837, 838
StyI CCWWGG 4 cut(s) 102, 330, 1506, 2319
TaiI ACGT 6 cut(s) 480, 590, 603, 627, 873, 1215
TaqII GACCGA 1 cut(s) 860
TasI AATT 4 cut(s) 467, 705, 1173, 2105
TatI WGTACW 2 cut(s) 917, 1674
TfiI GAWTC 2 cut(s) 1390, 1877
TscAI CASTG 3 cut(s) 556, 1530, 1959
TseFI GTSAC 4 cut(s) 625, 696, 1258, 1367
Tsp45I GTSAC 4 cut(s) 625, 696, 1258, 1367
TspDTI ATGAA 4 cut(s) 986, 1730, 1758, 2211
TspGWI ACGGA 3 cut(s) 913, 1233, 2001
TspMI CCCGGG 1 cut(s) 838
TspRI CASTG 3 cut(s) 556, 1530, 1959
VneI GTGCAC 1 cut(s) 479
VpaK11BI GGWCC 6 cut(s) 89, 498, 843, 964, 1047, 1580
XapI RAATTY 1 cut(s) 467
XbaI TCTAGA 1 cut(s) 1015
XceI RCATGY 1 cut(s) 1731
XcmI CCANNNNNNNNNTGG 3 cut(s) 32, 38, 946
XhoI CTCGAG 1 cut(s) 1547
XmaI CCCGGG 1 cut(s) 838
XspI CTAG 7 cut(s) 143, 422, 557, 915, 921, 1016, 1452
ZrmI AGTACT 2 cut(s) 919, 1676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.