RchiOBHm_Chr7g0188161
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006309
Physical Location & Seq
Reverse (-)
7773398 .. 7778287
4890 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16801

Sequence Viewer

Length: 2286 bp
ATGCAAGGCGGGCAGTCCCATTACGGAGCTTCAGCTCCAGCTCCAGCTCCAGCTGCCGAAGGGGCCGCTGCTACTACTTCCATGGCGGCGGAGGCAGCAGCAGCAGACCAAACGCATGTAGTTGAAGAGGCTTCCCCCATCAGCAGCAGGCCGCCGGCGGGAGGAGCAATCTCCGCCGTCAATTTGGACGAGCTCATGACGCTCTCCGGTGCAGCAGCTGACGTGGCGGCAGATCAAGGCGGTGGCGGCGGTGGAGGTTCCGGCGGCGGGAACAGATGGCCGCGTCAGGAGACGCTGGCGCTTCTTAAGATTCGGTCCGAGATGGATGTGGCCTTCCGCGACGCCACTCTCAAAGGTCCCTTATGGGAAGATGTTTCCAGGAAGCTAGCGGAGCTGGGTTACAAGCGAAATGCGAAGAAGTGCAAAGAGAAATTCGAAAACGTTCACAAGTATTATAAGAGGACCAAAGAAGGCCGGGCCGGGCGGCAAGACGGCAAGAGTTACAAGTTTTTCAGTGAGCTGGAGGCGCTCCACGGCACCACCGCCAACGTGTCGGCTTCTCCGCCGGTCCACGTCGCCAACACTCCGGTTTCTATCGGTTTCGGATCCATCAGCAGCCCGATGCCCATTTCGTCCTTCCGGATGACTAGTGGCAGTGGCACCACTTCTACTATTCCGGGTATGACCTCGCAGGGTGGGGGTGCGGGTGCGGGTGCAATTCCAGTAATGCCCTCGTCCCAACCACCACCGCCCCCGGCCCCTCCCATGGACATGAATTTCTCTTCCAACAGCTCCTCCTCCTCCTCGCACGATGAGTACGAGGACGACGATGAGGTGGCGGGAGAGCCGTCGACGAACACGAGCCGGAAGCGGAAGAGAGGTTTAGGGACGAGGTCGTCGTCGTCGAGAGAGGGCGGCGGAAGCACGAGAAGGATGATGGAGTTTTTCGAGATTCTGATGAAGCAGGTGATGCAGAAGCAGGAGACGATGCAGCAGAGGTTTCTGGAGGTGATTGAGAAGAGGGAGCAAGATCGGAACATAAGGGAAGACGCTTGGAAGAGGCAAGAGATGGCCAGGCTGACTAGAGAGCACGAGCTCATGACTCAAGAGCGAGCCATTTCGGCTTCCAGAGACGCCGCCATTATCGCTTTTCTGCAGAAAATTACCGGCCAGACTATCCAATTGCCTCCGCCCCTAAACGTCCACAATGCTCCTCCCCCGCCGGTGCCGCCGTCTGTGTCGTCGGTCCATGTCACGCCAGTATCAGCACCACCGCCGCAACCATCAGTTCAACAATTTCATCCGCACGCTACTCCAACTGCTCAAGTTTCACGGCATCAAATTCAAACTGCGATCCCTCCTCATCCTCAGACGGAGGTAGTTATGGCTGTGCCGGAGCAACAGGTGGCACCGCCACAGGAGAATGTAGTCGGTAGTGGAGGAGGTTTTGAGGCAACAACCTCATCGTCGAGGTGGCCCAAGGCGGAAGTTCTTGCACTGATAAAGCTGAGGAGCGGACTGGAGACTAGGTATCAAGAGGCTGGGCCGAAAGGCCCACTTTGGGAGGAGATTTCCGCAGGGATGCAGCGAATGGGGTACAAGAGGAATCCCAAGAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAGAGCAACAAGGCTAGGCCTGAAGATGCGAAAACGTGTCCTTATTTTCACGAACTTGATGCACTCTACCGGAAGAGGGTACTCGGCGGTGGCCCTAGTGGTGGTGGAAGCAGCAGCTCATTGGGTAATCAGAATATCCAACAACAGCCACCGGCTACTCAAGGGACAGTAGCAGCTTCTGTGCCTGCACCACAAACACAAGGAACAGTAGCAGCTACTGATCAATCAGGAAACAAGAATGGCGATCATAGCCCAAATCTGCAAAAGAATCTCTTTGGAGATGCACCTGAAGAGGCAGCCAAGAAGCCAGAAGACATTGTGAAGGAGTTGATGGGGCAACAGCAACAACAACATCATCATCATCCACAACAACTACTCAACCAACAAGGGGTGGAGCAGCAATTAGTAGTAGAAGACTATGATAGAGTTGAGGAAGCTGACAGCGACATCAATCTCGATCAAGATGAGGAGGAAGACGAAGATGACGAAGAGGATGAAGAAATGGATGAGGAGAGCAGGAAGATGGATTATAAGATTGAGTTTCAGAAGCAACAGAATACAGGCCCTTCATCTAATGGGGGAGGCAATGGGGCACCCTCCTTCTTGGCAATGGTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006275 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008156 GO:0008361 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010026 GO:0010035 GO:0010090 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0030308 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031668 GO:0032502 GO:0032535 GO:0032774 GO:0032875 GO:0032876 GO:0032989 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0040008 GO:0042221 GO:0042631 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045786 GO:0045892 GO:0045926 GO:0045934 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048580 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090066 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0097159 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000037 GO:2000038 GO:2000104 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

761

Amino Acids

82.17

Weight (kDa)

5.73

Isoelectric Point (pI)

66.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 91 - 177 9.2e-24 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 490 - 577 1.4e-25 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 456, 2196
AarI CACCTGC 1 cut(s) 955
AasI GACNNNNNNGTC 1 cut(s) 895
Acc36I ACCTGC 1 cut(s) 955
AccB1I GGYRCC 5 cut(s) 536, 659, 1225, 1408, 2257
AccBSI CCGCTC 1 cut(s) 1515
AccI GTMKAC 1 cut(s) 851
AccII CGCG 2 cut(s) 283, 339
AccIII TCCGGA 1 cut(s) 639
AclI AACGTT 1 cut(s) 441
AclWI GGATC 3 cut(s) 600, 613, 1348
AcoI YGGCCR 3 cut(s) 278, 1071, 1168
AcsI RAATTY 3 cut(s) 431, 775, 1341
AcuI CTGAAG 3 cut(s) 15, 1707, 1974
AcyI GRCGYC 2 cut(s) 342, 1134
AfaI GTAC 4 cut(s) 818, 1598, 1649, 1746
AfiI CCNNNNNNNGG 8 cut(s) 158, 161, 267, 766, 1561, 1741, 1766, 2053
AflII CTTAAG 1 cut(s) 305
AflIII ACRYGT 2 cut(s) 549, 1700
AgsI TTSAA 5 cut(s) 125, 1292, 1346, 1654, 2282
AhlI ACTAGT 1 cut(s) 647
AjiI CACGTC 2 cut(s) 223, 574
AjnI CCWGG 2 cut(s) 377, 1073
Alw21I GWGCWC 3 cut(s) 195, 1092, 1098
Alw26I GTCTC 4 cut(s) 284, 977, 1125, 1517
AlwI GGATC 3 cut(s) 600, 613, 1348
AlwNI CAGNNNCTG 3 cut(s) 218, 1844, 1883
Aor13HI TCCGGA 1 cut(s) 639
ApoI RAATTY 3 cut(s) 431, 775, 1341
Asp700I GAANNNNTTC 1 cut(s) 441
AspLEI GCGC 2 cut(s) 301, 529
AsuC2I CCSGG 4 cut(s) 476, 481, 678, 755
AsuHPI GGTGA 2 cut(s) 979, 1021
AsuII TTCGAA 1 cut(s) 435
AsuNHI GCTAGC 1 cut(s) 385
AvaII GGWCC 5 cut(s) 315, 356, 462, 568, 1246
BaeGI GKGCMC 1 cut(s) 2260
BaeI ACNNNNGTAYC 2 cut(s) 1245, 1278
BalI TGGCCA 1 cut(s) 1073
BamHI GGATCC 1 cut(s) 605
BanI GGYRCC 5 cut(s) 536, 659, 1225, 1408, 2257
BanII GRGCYC 2 cut(s) 195, 1098
BauI CACGAG 3 cut(s) 859, 925, 1091
BbsI GAAGAC 4 cut(s) 1053, 1983, 2085, 2145
Bbv12I GWGCWC 3 cut(s) 195, 1092, 1098
BbvCI CCTCAGC 1 cut(s) 1508
BccI CCATC 9 cut(s) 146, 270, 316, 617, 931, 1063, 1291, 1990, 2182
BceAI ACGGC 6 cut(s) 161, 508, 550, 832, 1216, 1349
BcgI CGANNNNNNTGC 2 cut(s) 1706, 1740
BciT130I CCWGG 2 cut(s) 379, 1075
BclI TGATCA 1 cut(s) 1885
BcnI CCSGG 4 cut(s) 476, 481, 678, 755
BcoDI GTCTC 4 cut(s) 284, 977, 1125, 1517
BcuI ACTAGT 1 cut(s) 647
BfaI CTAG 6 cut(s) 386, 648, 1083, 1527, 1680, 1761
BfmI CTRYAG 1 cut(s) 1154
BfoI RGCGCY 2 cut(s) 302, 530
BfrI CTTAAG 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 955
BglI GCCNNNNNGGC 2 cut(s) 62, 1121
BmcAI AGTACT 1 cut(s) 1649
Bme1390I CCNGG 6 cut(s) 379, 476, 481, 678, 755, 1075
Bme18I GGWCC 5 cut(s) 315, 356, 462, 568, 1246
BmgBI CACGTC 2 cut(s) 223, 574
BmrFI CCNGG 6 cut(s) 379, 476, 481, 678, 755, 1075
BmsI GCATC 8 cut(s) 612, 960, 978, 1345, 1572, 1681, 1714, 1936
BmtI GCTAGC 1 cut(s) 389
BpiI GAAGAC 4 cut(s) 1053, 1983, 2085, 2145
BpmI CTGGAG 6 cut(s) 21, 27, 33, 542, 1025, 1541
Bpu10I CCTNAGC 1 cut(s) 1508
Bpu14I TTCGAA 1 cut(s) 435
BpuEI CTTGAG 3 cut(s) 1089, 1308, 1809
BpuMI CCSGG 4 cut(s) 476, 481, 678, 755
BsaHI GRCGYC 2 cut(s) 342, 1134
BsaJI CCNNGG 5 cut(s) 81, 532, 753, 765, 1479
BsaWI WCCGGW 4 cut(s) 206, 586, 639, 1734
BsaXI ACNNNNNCTCC 4 cut(s) 779, 809, 1514, 1544
Bsc4I CCNNNNNNNGG 8 cut(s) 158, 161, 267, 766, 1561, 1741, 1766, 2053
Bse118I RCCGGY 5 cut(s) 154, 565, 1166, 1222, 1816
Bse1I ACTGG 3 cut(s) 722, 1259, 1524
Bse3DI GCAATG 2 cut(s) 2257, 2280
BseAI TCCGGA 1 cut(s) 639
BseBI CCWGG 2 cut(s) 379, 1075
BseDI CCNNGG 5 cut(s) 81, 532, 753, 765, 1479
BseGI GGATG 9 cut(s) 331, 648, 939, 1300, 1363, 1587, 2026, 2164, 2176
BseLI CCNNNNNNNGG 8 cut(s) 158, 161, 267, 766, 1561, 1741, 1766, 2053
BseMI GCAATG 2 cut(s) 2257, 2280
BseMII CTCAG 2 cut(s) 1382, 1499
BseNI ACTGG 3 cut(s) 722, 1259, 1524
BseSI GKGCMC 1 cut(s) 2260
BseYI CCCAGC 2 cut(s) 394, 1541
BsgI GTGCAG 2 cut(s) 231, 1836
Bsh1236I CGCG 2 cut(s) 283, 339
BshNI GGYRCC 5 cut(s) 536, 659, 1225, 1408, 2257
BsiHKAI GWGCWC 3 cut(s) 195, 1092, 1098
BslFI GGGAC 4 cut(s) 342, 721, 901, 1843
BslI CCNNNNNNNGG 8 cut(s) 158, 161, 267, 766, 1561, 1741, 1766, 2053
BsmAI GTCTC 4 cut(s) 284, 977, 1125, 1517
BsmBI CGTCTC 3 cut(s) 284, 977, 1125
BsmFI GGGAC 4 cut(s) 342, 721, 901, 1843
Bsp119I TTCGAA 1 cut(s) 435
Bsp1286I GDGCHC 4 cut(s) 195, 1092, 1098, 2260
Bsp13I TCCGGA 1 cut(s) 639
Bsp143I GATC 7 cut(s) 232, 605, 1030, 1353, 1885, 1909, 2122
Bsp19I CCATGG 2 cut(s) 81, 765
BspCNI CTCAG 2 cut(s) 1381, 1500
BspEI TCCGGA 1 cut(s) 639
BspFNI CGCG 2 cut(s) 283, 339
BspHI TCATGA 2 cut(s) 195, 1098
BspMAI CTGCAG 1 cut(s) 1158
BspMI ACCTGC 1 cut(s) 955
BspOI GCTAGC 1 cut(s) 389
BspPI GGATC 3 cut(s) 600, 613, 1348
BspT104I TTCGAA 1 cut(s) 435
BspT107I GGYRCC 5 cut(s) 536, 659, 1225, 1408, 2257
BspTI CTTAAG 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 1515
BsrDI GCAATG 2 cut(s) 2257, 2280
BsrFI RCCGGY 5 cut(s) 154, 565, 1166, 1222, 1816
BsrI ACTGG 3 cut(s) 722, 1259, 1524
BssAI RCCGGY 5 cut(s) 154, 565, 1166, 1222, 1816
BssECI CCNNGG 5 cut(s) 81, 532, 753, 765, 1479
BssMI GATC 7 cut(s) 232, 605, 1030, 1353, 1885, 1909, 2122
BssNI GRCGYC 2 cut(s) 342, 1134
BssSI CACGAG 3 cut(s) 859, 925, 1091
BssT1I CCWWGG 3 cut(s) 81, 765, 1479
Bst2BI CACGAG 3 cut(s) 859, 925, 1091
Bst2UI CCWGG 2 cut(s) 379, 1075
Bst4CI ACNGT 2 cut(s) 1834, 1873
Bst6I CTCTTC 8 cut(s) 120, 787, 869, 1013, 1052, 1733, 1950, 2148
BstACI GRCGYC 2 cut(s) 342, 1134
BstAFI CTTAAG 1 cut(s) 305
BstAPI GCANNNNNTGC 1 cut(s) 970
BstBI TTCGAA 1 cut(s) 435
BstC8I GCNNGC 8 cut(s) 11, 149, 156, 297, 387, 1113, 1308, 1851
BstDEI CTNAG 2 cut(s) 1368, 1508
BstDSI CCRYGG 3 cut(s) 81, 532, 765
BstF5I GGATG 9 cut(s) 331, 648, 939, 1300, 1363, 1587, 2026, 2164, 2176
BstFNI CGCG 2 cut(s) 283, 339
BstH2I RGCGCY 2 cut(s) 302, 530
BstHHI GCGC 2 cut(s) 301, 529
BstKTI GATC 7 cut(s) 235, 608, 1033, 1356, 1888, 1912, 2125
BstMAI GTCTC 4 cut(s) 284, 977, 1125, 1517
BstMBI GATC 7 cut(s) 232, 605, 1030, 1353, 1885, 1909, 2122
BstNI CCWGG 2 cut(s) 379, 1075
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 6 cut(s) 377, 474, 479, 676, 753, 1073
BstSFI CTRYAG 1 cut(s) 1154
BstSLI GKGCMC 1 cut(s) 2260
BstUI CGCG 2 cut(s) 283, 339
BstV2I GAAGAC 4 cut(s) 1053, 1983, 2085, 2145
BstX2I RGATCY 1 cut(s) 605
BstYI RGATCY 1 cut(s) 605
BtgI CCRYGG 3 cut(s) 81, 532, 765
BtrI CACGTC 2 cut(s) 223, 574
BtsCI GGATG 9 cut(s) 331, 648, 939, 1300, 1363, 1587, 2026, 2164, 2176
BtsI GCAGTG 1 cut(s) 661
BtsIMutI CAGTG 3 cut(s) 520, 661, 1496
BveI ACCTGC 1 cut(s) 955
Cac8I GCNNGC 8 cut(s) 11, 149, 156, 297, 387, 1113, 1308, 1851
CaiI CAGNNNCTG 3 cut(s) 218, 1844, 1883
CciI TCATGA 2 cut(s) 195, 1098
CfoI GCGC 2 cut(s) 301, 529
Cfr10I RCCGGY 5 cut(s) 154, 565, 1166, 1222, 1816
CpoI CGGWCCG 1 cut(s) 315
CseI GACGC 6 cut(s) 208, 272, 301, 350, 1058, 1142
Csp6I GTAC 4 cut(s) 817, 1597, 1648, 1745
CspI CGGWCCG 1 cut(s) 315
CviAII CATG 7 cut(s) 82, 116, 196, 766, 772, 1099, 1250
CviQI GTAC 4 cut(s) 817, 1597, 1648, 1745
DdeI CTNAG 2 cut(s) 1368, 1508
DpnI GATC 7 cut(s) 234, 607, 1032, 1355, 1887, 1911, 2124
DpnII GATC 7 cut(s) 232, 605, 1030, 1353, 1885, 1909, 2122
DrdI GACNNNNNNGTC 1 cut(s) 895
DseDI GACNNNNNNGTC 1 cut(s) 895
EaeI YGGCCR 3 cut(s) 278, 1071, 1168
Eam1104I CTCTTC 8 cut(s) 120, 787, 869, 1013, 1052, 1733, 1950, 2148
EarI CTCTTC 8 cut(s) 120, 787, 869, 1013, 1052, 1733, 1950, 2148
EciI GGCGGA 6 cut(s) 104, 163, 552, 933, 1179, 1499
Ecl136II GAGCTC 2 cut(s) 193, 1096
Eco130I CCWWGG 3 cut(s) 81, 765, 1479
Eco147I AGGCCT 1 cut(s) 1684
Eco24I GRGCYC 2 cut(s) 195, 1098
Eco47I GGWCC 5 cut(s) 315, 356, 462, 568, 1246
Eco53kI GAGCTC 2 cut(s) 193, 1096
Eco57I CTGAAG 3 cut(s) 15, 1707, 1974
EcoICRI GAGCTC 2 cut(s) 193, 1096
EcoO109I RGGNCCY 2 cut(s) 356, 2228
EcoRII CCWGG 2 cut(s) 377, 1073
EcoT14I CCWWGG 3 cut(s) 81, 765, 1479
EcoT38I GRGCYC 2 cut(s) 195, 1098
ErhI CCWWGG 3 cut(s) 81, 765, 1479
Esp3I CGTCTC 3 cut(s) 284, 977, 1125
FaeI CATG 7 cut(s) 85, 119, 199, 769, 775, 1102, 1253
FalI AAGNNNNNCTT 4 cut(s) 1542, 1574, 1922, 1954
FaqI GGGAC 4 cut(s) 342, 721, 901, 1843
FatI CATG 7 cut(s) 81, 115, 195, 765, 771, 1098, 1249
FauI CCCGC 7 cut(s) 2, 151, 260, 697, 703, 832, 1227
FbaI TGATCA 1 cut(s) 1885
FblI GTMKAC 1 cut(s) 851
FokI GGATG 9 cut(s) 338, 655, 946, 1287, 1350, 1594, 2013, 2171, 2183
FriOI GRGCYC 2 cut(s) 195, 1098
FspBI CTAG 6 cut(s) 386, 648, 1083, 1527, 1680, 1761
GlaI GCGC 2 cut(s) 300, 528
GsaI CCCAGC 2 cut(s) 398, 1545
GsuI CTGGAG 6 cut(s) 21, 27, 33, 542, 1025, 1541
HaeII RGCGCY 2 cut(s) 302, 530
HgaI GACGC 6 cut(s) 208, 272, 301, 350, 1058, 1142
HhaI GCGC 2 cut(s) 301, 529
Hin1I GRCGYC 2 cut(s) 342, 1134
Hin1II CATG 7 cut(s) 85, 119, 199, 769, 775, 1102, 1253
Hin6I GCGC 2 cut(s) 299, 527
HinP1I GCGC 2 cut(s) 299, 527
HincII GTYRAC 1 cut(s) 852
HindII GTYRAC 1 cut(s) 852
HinfI GANTC 5 cut(s) 310, 952, 1102, 1606, 1933
HphI GGTGA 2 cut(s) 979, 1021
Hpy166II GTNNAC 4 cut(s) 445, 571, 852, 1204
Hpy188I TCNGA 7 cut(s) 319, 605, 957, 1035, 1371, 1797, 2211
Hpy8I GTNNAC 4 cut(s) 445, 571, 852, 1204
HpyAV CCTTC 9 cut(s) 53, 343, 464, 646, 924, 1657, 1981, 2241, 2275
HpyCH4III ACNGT 2 cut(s) 1834, 1873
HpyCH4IV ACGT 6 cut(s) 222, 441, 549, 573, 1200, 1700
HpyF3I CTNAG 2 cut(s) 1368, 1508
HpySE526I ACGT 6 cut(s) 222, 441, 549, 573, 1200, 1700
Hsp92I GRCGYC 2 cut(s) 342, 1134
Hsp92II CATG 7 cut(s) 85, 119, 199, 769, 775, 1102, 1253
HspAI GCGC 2 cut(s) 299, 527
Kpn2I TCCGGA 1 cut(s) 639
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 1885
Kzo9I GATC 7 cut(s) 232, 605, 1030, 1353, 1885, 1909, 2122
LweI GCATC 8 cut(s) 612, 960, 978, 1345, 1572, 1681, 1714, 1936
MaeI CTAG 6 cut(s) 386, 648, 1083, 1527, 1680, 1761
MaeII ACGT 6 cut(s) 222, 441, 549, 573, 1200, 1700
MaeIII GTNAC 3 cut(s) 398, 500, 1252
MalI GATC 7 cut(s) 234, 607, 1032, 1355, 1887, 1911, 2124
MbiI CCGCTC 1 cut(s) 1515
MboI GATC 7 cut(s) 232, 605, 1030, 1353, 1885, 1909, 2122
MfeI CAATTG 1 cut(s) 1181
MflI RGATCY 1 cut(s) 605
MhlI GDGCHC 4 cut(s) 195, 1092, 1098, 2260
MlsI TGGCCA 1 cut(s) 1073
MluCI AATT 9 cut(s) 181, 431, 717, 775, 1161, 1181, 1295, 1341, 2066
MluNI TGGCCA 1 cut(s) 1073
MlyI GAGTC 1 cut(s) 1096
MmeI TCCRAC 3 cut(s) 810, 1340, 1828
Mox20I TGGCCA 1 cut(s) 1073
MreI CGCCGGCG 1 cut(s) 154
MroI TCCGGA 1 cut(s) 639
MroNI GCCGGC 1 cut(s) 154
MroXI GAANNNNTTC 1 cut(s) 441
MscI TGGCCA 1 cut(s) 1073
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 770
Msp20I TGGCCA 1 cut(s) 1073
MspA1I CMGCKG 3 cut(s) 53, 68, 218
MspCI CTTAAG 1 cut(s) 305
MspR9I CCNGG 6 cut(s) 379, 476, 481, 678, 755, 1075
MunI CAATTG 1 cut(s) 1181
MvaI CCWGG 2 cut(s) 379, 1075
MvnI CGCG 2 cut(s) 283, 339
NaeI GCCGGC 1 cut(s) 156
NciI CCSGG 4 cut(s) 476, 481, 678, 755
NcoI CCATGG 2 cut(s) 81, 765
NdeII GATC 7 cut(s) 232, 605, 1030, 1353, 1885, 1909, 2122
NgoMIV GCCGGC 1 cut(s) 154
NheI GCTAGC 1 cut(s) 385
NlaIII CATG 7 cut(s) 85, 119, 199, 769, 775, 1102, 1253
NmeAIII GCCGAG 1 cut(s) 1728
NmuCI GTSAC 1 cut(s) 1252
NspI RCATGY 1 cut(s) 119
NspV TTCGAA 1 cut(s) 435
PagI TCATGA 2 cut(s) 195, 1098
PaqCI CACCTGC 1 cut(s) 955
PceI AGGCCT 1 cut(s) 1684
PcsI WCGNNNNNNNCGW 6 cut(s) 816, 825, 857, 896, 902, 2148
PdiI GCCGGC 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 4 cut(s) 310, 952, 1606, 1933
PflFI GACNNNGTC 1 cut(s) 892
PfoI TCCNGGA 1 cut(s) 377
PleI GAGTC 1 cut(s) 1096
PpsI GAGTC 1 cut(s) 1096
PpuMI RGGWCCY 1 cut(s) 356
PsiI TTATAA 2 cut(s) 456, 2196
Psp124BI GAGCTC 2 cut(s) 195, 1098
Psp1406I AACGTT 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 356
Psp6I CCWGG 2 cut(s) 377, 1073
PspFI CCCAGC 2 cut(s) 394, 1541
PspGI CCWGG 2 cut(s) 377, 1073
PspPPI RGGWCCY 1 cut(s) 356
PstI CTGCAG 1 cut(s) 1158
PstNI CAGNNNCTG 3 cut(s) 218, 1844, 1883
PsuI RGATCY 1 cut(s) 605
PsyI GACNNNGTC 1 cut(s) 892
PvuII CAGCTG 2 cut(s) 53, 218
RsaI GTAC 4 cut(s) 818, 1598, 1649, 1746
RsaNI GTAC 4 cut(s) 817, 1597, 1648, 1745
RseI CAYNNNNRTG 1 cut(s) 770
Rsr2I CGGWCCG 1 cut(s) 315
RsrII CGGWCCG 1 cut(s) 315
SacI GAGCTC 2 cut(s) 195, 1098
SalI GTCGAC 1 cut(s) 850
SaqAI TTAA 1 cut(s) 306
Sau3AI GATC 7 cut(s) 232, 605, 1030, 1353, 1885, 1909, 2122
ScaI AGTACT 1 cut(s) 1649
SchI GAGTC 1 cut(s) 1096
ScrFI CCNGG 6 cut(s) 379, 476, 481, 678, 755, 1075
SduI GDGCHC 4 cut(s) 195, 1092, 1098, 2260
SfaNI GCATC 8 cut(s) 612, 960, 978, 1345, 1572, 1681, 1714, 1936
SfcI CTRYAG 1 cut(s) 1154
SfuI TTCGAA 1 cut(s) 435
SgrAI CRCCGGYG 2 cut(s) 154, 1222
SgrDI CGTCGACG 1 cut(s) 850
SinI GGWCC 5 cut(s) 315, 356, 462, 568, 1246
SmiMI CAYNNNNRTG 1 cut(s) 770
SmlI CTYRAG 4 cut(s) 305, 1104, 1323, 1824
SmoI CTYRAG 4 cut(s) 305, 1104, 1323, 1824
SpeI ACTAGT 1 cut(s) 647
Sse9I AATT 9 cut(s) 181, 431, 717, 775, 1161, 1181, 1295, 1341, 2066
SseBI AGGCCT 1 cut(s) 1684
SspMI CTAG 6 cut(s) 386, 648, 1083, 1527, 1680, 1761
SstI GAGCTC 2 cut(s) 195, 1098
StuI AGGCCT 1 cut(s) 1684
StyD4I CCNGG 6 cut(s) 377, 474, 479, 676, 753, 1073
StyI CCWWGG 3 cut(s) 81, 765, 1479
TaaI ACNGT 2 cut(s) 1834, 1873
TaiI ACGT 6 cut(s) 225, 444, 552, 576, 1203, 1703
TaqI TCGA 6 cut(s) 435, 851, 905, 948, 1469, 2121
TaqII GACCGA 2 cut(s) 303, 1234
TasI AATT 9 cut(s) 181, 431, 717, 775, 1161, 1181, 1295, 1341, 2066
TatI WGTACW 1 cut(s) 1647
TfiI GAWTC 4 cut(s) 310, 952, 1606, 1933
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 3 cut(s) 520, 661, 1503
TseFI GTSAC 1 cut(s) 1252
Tsp45I GTSAC 1 cut(s) 1252
TspDTI ATGAA 5 cut(s) 788, 974, 1289, 2175, 2223
TspGWI ACGGA 2 cut(s) 39, 1388
TspRI CASTG 3 cut(s) 520, 661, 1503
Tth111I GACNNNGTC 1 cut(s) 892
Vha464I CTTAAG 1 cut(s) 305
VpaK11BI GGWCC 5 cut(s) 315, 356, 462, 568, 1246
XapI RAATTY 3 cut(s) 431, 775, 1341
XceI RCATGY 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 851
XmnI GAANNNNTTC 1 cut(s) 441
XspI CTAG 6 cut(s) 386, 648, 1083, 1527, 1680, 1761
ZrmI AGTACT 1 cut(s) 1649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.