Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011908

Physical Location & Seq

Genomic Coordinates Forward (+)

5787817 .. 5796417

Gene Structure 8601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1061700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2877 bp

ATGGAATTCTCACTCAGCACCCCACACTATCCCAACACCACCTCTCCCTTCTCCGCCGTCGGCGTCGTCCTCAACCTGAACCAAAAACACCACTCCACCACCACAACTTGTCTCTCTTTCTCTCTCAAACCAACACCTCCGCCGCCGCCAAATTCTGACAGCCCCATCAGCTCCTCCCCTCCATCTAACCAACTTCGCCGGCCCAAAACCCTCAAAACCGCTTCTCCACCCACCAAACCCACCTCCAAATTCCGCTCTAACCCCTTCAAGAACCTCATTAATCCCGCCCAAGTCCCTACCCCACCAATTAACACCACCACCAACGCCAATTCACACCCGCTCACTGACAAGCTTTGGCTCACTAGCAAGCTCTCTCCCCCACCTCCACCTCCACCTCCATCTCCTTCTCCACCTCCGCCGCCTGAAACAGATACTTCTGAAGAAACCCAAAAACCCATCAAGGACAATGAGCCCGGAAAGAATTCGGAGCTACCCAAAGTTGAGTTGCGGCAGGAGGGTAAAATCTTTGTGGGAAATTTGCCCAACTGGGTCAAGAAAAATGAGGTTTCCGACCTTTTCCGGCAATTTGGGCCCATAAAGAGTGTGATTCTGATTAAGGGTCATTCAAGCACTGAGAGAAATGCAGGTTTCGGGTTTGTTATTTATGGTGGTAAGACTGCAGCTAAGTCGGCCACAAAGGCTGTGGAGTTCGATGGCATGGAGTTCCATGGGAGGGTTCTGACCGTCAAATTGGATGATGGGAGCAGATTGAAGGACAAAACTGAGGAGAGGACACGGTGGCTTGAAGGGCACGACAGTGTTGAGTATCAGTCTCAGTGGCATAAAGAGCGGGAGAACTCGCGTAAGGCATTGCGCAAGGTTATGGATACTGAACCTGAGAATTGGCAAGCAGTTGTTCGGTTTTTTGAGAGAATTAAGAAGCCTTCCAGAGGAGAATATGGCCTGATGGTGAAGTATTATGCAAGGCGAGGGGACATGCATCGTGCTCGTGAAACTTTTGAGAGCATGCGAGCAAGAGGAATAGAACCAACATCACATGTGTACACAAGCCTTATTCACGCTTATGCAGTTGGCAGAGACATGGATGAAGCATTATCATGTGTTAGAAAAATGAAGGAAGAGGGCATTGAAATGAGTTTGGTGACTTACAGTATCGTTGTTGGGGGATTCGCAAAAGTTGGCAATGCTGAAGCTGCAGATTTCTGGTTTAAGGAGGCCAAAGAGAGACATACAACTTTGAATGCAATCATTTATGGGAATATTATATATGCTTATTGTCAAACATGCAATATGGATCGCGCCGAGGCATTAGTGAGGGACATGGAAGAAGCAGGCATAGATGCTCCTATTGACATTTATCATACCATGATGGATGGCTACACAATTATGGGGAATGAAGATAAATGTTTGATTGTGTTTGAACGACTCAAGGAATGTGGCTTTACACCTTCAGTTATCAGTTATGGATGTCTGATCAATCTTTACATTAAGATTGGAAAAGTTTCTAAAGCCCTGGAAGTTAGCAAAGTGATGGAATCAGCTGGCATTAAGCATAACATGAAGACCTACTCCATGTTAATCAATGGATTTTTGAAGTTAAAAGATTGGACTAATGCATTTTCAGTTGTAGAAGATTTGGTAAAGGATGGGTTGAAGCCGGATGTAGTCCTTTACAATAACATTATAACAGCTTTCTGTGGAATGGGTAACATGGACCGTGCCATTCGCACCATTAAAGAAATGCAGCGGGAGAGACATAGACCTACATCACGGACGTTTATGCCAATAATACATGGTTTTGCAAGGTCTGGAGAAATGAGAAGAGCCCTCGAGATTTTCGATATGATGAGGATGAGTGGGTGCATTCCCACTGTGCATACATTTAATGCTCTGGTTCTTGGTCTTGTGGAGAAGCGGCAGATGCAGAAGGCTGTTGAAATATTGGATGAGATGACACTAGCAGGCATAAATCCAGACGAGCACACATACACAACTATCATGCATGGTTATGCAGCTTTAGGTGATACTGGCAAAGCCTTTGAGTATTTTACCAAACTGAGGAGTGAGGGCCTGGAGATTGATGTGTTCACATATGAGGCTTTGCTGAAGGCATGTTGCAAGGCAGGCAGAATGCAAAGTGCATTAGCGGTCACCAAAGAAATGAGTGCTAAACGCATTCCAAGGAACACCTTTGTTTACAACATATTAATTGATGGATGGGCTCGAAGAGGTGATGTTTGGGAGGCTGCTGACTTGATGCAGCAGATGAAAAAGGAAGGGGTTCGATCTGATATTCACACCTACACATCTTTCATAAATGCTTGTTGCAAGGCTGGAGATATGCAGAGAGCTGAAAAAATAATTAAAGAAATGGAAGCGCTTGGAGTGAAGCCAAATGTGAAAACCTACACTACGTTGATAAAGGGTTGGGCGCGTGCTTCTCTCCCAGAGAAGGCCTTGAGATGCTTCAAAGAGATGAAGTCAGCTGGGTTGAAGCCGGACAGAGCTGTATACCATTGCTTGATGACATCTCTGCTGTCAAGGGCTACTGTTGCTGAAGTTTACATCTACTCGGGCCTTCTGTCCATTTGTAAAGAGATGATTGAATCTGGGTTGACTGTTGATATGGGAACTGCAGTTCACTGGTCGAGGTGCTTACGCAAGATTGAAACAACAGGTGGGGAGCTTACAGAAGCCCTGCAGAAGACCTTCCCACCTGATTGGAGCTCATTTCATACCTTAGATGGAAGTTCAGATGTGGACAGTGATGAAGAAATAGATGTTATCAGTGACGATGATGATACGGAGTTTGCTAGTAGAATAAACGGTGATGAATTTATGGAGAGGATGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 RRM_1

Protein Analysis

959

Amino Acids

107.71

Weight (kDa)

8.24

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	175 - 247	1e-13	RNA recognition motif
PPR_2	PF13041	322 - 363	2.6e-08	PPR repeat family
TPR_24	PF23276	328 - 389	3.5e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	333 - 406	7.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	350 - 399	4.6e-10	PPR repeat family
PPR	PF01535	354 - 383	3.1e-06	PPR repeat
PPR_3	PF13812	355 - 396	1e-06	Pentatricopeptide repeat domain
PPR_3	PF13812	444 - 502	1.4e-07	Pentatricopeptide repeat domain
TPR_24	PF23276	479 - 587	1.3e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	490 - 539	6.7e-11	PPR repeat family
PPR_long	PF17177	545 - 638	7.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	548 - 603	2.6e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	556 - 588	7.9e-08	PPR repeat
PPR_2	PF13041	560 - 609	3e-11	PPR repeat family
TPR_24	PF23276	593 - 692	1.7e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	599 - 642	2.7e-08	PPR repeat family
PPR_3	PF13812	599 - 639	5.7e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	613 - 720	4.3e-12	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	630 - 678	9.8e-13	PPR repeat family
PPR_2	PF13041	669 - 714	4e-10	PPR repeat family
PPR_3	PF13812	692 - 745	3.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	697 - 729	5.8e-07	PPR repeat
PPR_2	PF13041	701 - 746	5.3e-10	PPR repeat family
PPR_long	PF17177	720 - 862	3.1e-14	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	733 - 764	1.8e-06	PPR repeat
PPR_2	PF13041	736 - 784	4.8e-15	PPR repeat family
PPR	PF01535	739 - 768	5.8e-06	PPR repeat
PPR_3	PF13812	759 - 815	4.2e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	767 - 799	9.4e-08	PPR repeat
PPR_2	PF13041	771 - 818	5.4e-15	PPR repeat family
PPR	PF01535	774 - 803	1.2e-07	PPR repeat
PPR_3	PF13812	793 - 849	8.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	802 - 834	1.2e-06	PPR repeat
PPR	PF01535	809 - 838	1e-06	PPR repeat
PPR_2	PF13041	809 - 852	1.5e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04810 AT5G04810
fragaria_vesca	FvH4_7g06690
malus_domestica	MD07G1061700.v1.1
prunus_persica	Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1
pyrus_communis	pycom07g04720
rosa_chinensis	RchiOBHm_Chr1g0336351
rosa_laevigata	RLG00000029372
rosa_multiflora	Rmu_sc0005261.1_g000013 Rmu_sc0005480.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315730
rosa_rugosa	Rorug01G0125300
rosa_samantha	Rh1AG144500 Rh1BG114100 Rh1CG136000 Rh1DG151200
rosa_wichuraiana	Rw1G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1706
Acc16I	TGCGCA	1 cut(s)	875
Acc36I	ACCTGC	1 cut(s)	635
AccBSI	CCGCTC	3 cut(s)	255, 340, 850
AccI	GTMKAC	1 cut(s)	2532
AccII	CGCG	3 cut(s)	862, 1320, 2455
AclWI	GGATC	1 cut(s)	1323
AcoI	YGGCCR	1 cut(s)	690
AcsI	RAATTY	6 cut(s)	5, 151, 248, 481, 535, 2855
AcuI	CTGAAG	5 cut(s)	459, 1230, 1455, 2147, 2598
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	1064
AfeI	AGCGCT	1 cut(s)	2400
AfiI	CCNNNNNNNGG	4 cut(s)	733, 950, 2079, 2473
AflIII	ACRYGT	1 cut(s)	1057
AjnI	CCWGG	2 cut(s)	1533, 2091
AleI	CACNNNNGTG	1 cut(s)	816
AloI	GAACNNNNNNTCC	2 cut(s)	2643, 2675
Alw21I	GWGCWC	3 cut(s)	1009, 2004, 2750
Alw26I	GTCTC	5 cut(s)	116, 837, 1092, 1240, 1768
AlwI	GGATC	1 cut(s)	1323
Ama87I	CYCGRG	2 cut(s)	1850, 2593
Aor51HI	AGCGCT	1 cut(s)	2400
AoxI	GGCC	8 cut(s)	200, 590, 690, 961, 1236, 2089, 2475, 2596
ApaI	GGGCCC	1 cut(s)	594
ApeKI	GCWGC	6 cut(s)	680, 1214, 1765, 2033, 2267, 2281
ApoI	RAATTY	6 cut(s)	5, 151, 248, 481, 535, 2855
AseI	ATTAAT	2 cut(s)	279, 2228
Asp700I	GAANNNNTTC	4 cut(s)	481, 1522, 2301, 2729
AspLEI	GCGC	4 cut(s)	876, 1322, 2401, 2455
AspS9I	GGNCC	6 cut(s)	201, 590, 591, 1735, 2089, 2596
AsuC2I	CCSGG	1 cut(s)	474
AsuHPI	GGTGA	6 cut(s)	982, 1174, 2054, 2164, 2264, 2861
AvaI	CYCGRG	2 cut(s)	1850, 2593
AvaII	GGWCC	1 cut(s)	1735
BaeGI	GKGCMC	2 cut(s)	594, 813
BanII	GRGCYC	5 cut(s)	474, 594, 1849, 2245, 2750
BauI	CACGAG	1 cut(s)	1008
BbsI	GAAGAC	2 cut(s)	1589, 2732
Bbv12I	GWGCWC	3 cut(s)	1009, 2004, 2750
BbvI	GCAGC	6 cut(s)	692, 1201, 1777, 2045, 2254, 2293
BceAI	ACGGC	1 cut(s)	41
BcgI	CGANNNNNNTGC	4 cut(s)	669, 703, 989, 1023
BciT130I	CCWGG	2 cut(s)	1535, 2093
BciVI	GTATCC	1 cut(s)	880
BclI	TGATCA	1 cut(s)	1494
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	5 cut(s)	116, 837, 1092, 1240, 1768
BfaI	CTAG	3 cut(s)	363, 1979, 2835
BfmI	CTRYAG	4 cut(s)	678, 1215, 2655, 2720
BfoI	RGCGCY	1 cut(s)	2402
BfuAI	ACCTGC	1 cut(s)	635
BfuI	GTATCC	1 cut(s)	880
BglI	GCCNNNNNGGC	1 cut(s)	698
Bme1390I	CCNGG	3 cut(s)	474, 1535, 2093
Bme18I	GGWCC	1 cut(s)	1735
BmeT110I	CYCGRG	2 cut(s)	1850, 2593
BmgT120I	GGNCC	6 cut(s)	201, 590, 591, 1735, 2089, 2596
BmiI	GGNNCC	1 cut(s)	592
BmrFI	CCNGG	3 cut(s)	474, 1535, 2093
BmrI	ACTGGG	1 cut(s)	556
BmsI	GCATC	5 cut(s)	1009, 1351, 1932, 2268, 2474
BmuI	ACTGGG	1 cut(s)	556
BpiI	GAAGAC	2 cut(s)	1589, 2732
BpmI	CTGGAG	3 cut(s)	1851, 2114, 2376
BpuEI	CTTGAG	2 cut(s)	1433, 2500
BpuMI	CCSGG	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	4 cut(s)	727, 1323, 1533, 2201
BsaXI	ACNNNNNCTCC	4 cut(s)	28, 58, 208, 238
Bsc4I	CCNNNNNNNGG	4 cut(s)	733, 950, 2079, 2473
Bse118I	RCCGGY	1 cut(s)	198
Bse1I	ACTGG	3 cut(s)	551, 2053, 2669
Bse3DI	GCAATG	3 cut(s)	869, 1210, 2536
BseBI	CCWGG	2 cut(s)	1535, 2093
BseDI	CCNNGG	4 cut(s)	727, 1323, 1533, 2201
BseLI	CCNNNNNNNGG	4 cut(s)	733, 950, 2079, 2473
BseMI	GCAATG	3 cut(s)	869, 1210, 2536
BseMII	CTCAG	6 cut(s)	28, 624, 774, 848, 888, 2069
BseNI	ACTGG	3 cut(s)	551, 2053, 2669
BseRI	GAGGAG	4 cut(s)	163, 800, 966, 2095
BseSI	GKGCMC	2 cut(s)	594, 813
BseXI	GCAGC	6 cut(s)	692, 1201, 1777, 2045, 2254, 2293
BseYI	CCCAGC	1 cut(s)	2507
Bsh1236I	CGCG	3 cut(s)	862, 1320, 2455
BshFI	GGCC	8 cut(s)	202, 592, 692, 963, 1238, 2091, 2477, 2598
BsiHKAI	GWGCWC	3 cut(s)	1009, 2004, 2750
BsiHKCI	CYCGRG	2 cut(s)	1850, 2593
BsiSI	CCGG	5 cut(s)	199, 474, 580, 1679, 2519
BslFI	GGGAC	3 cut(s)	278, 1007, 1352
BslI	CCNNNNNNNGG	4 cut(s)	733, 950, 2079, 2473
BsmAI	GTCTC	5 cut(s)	116, 837, 1092, 1240, 1768
BsmFI	GGGAC	3 cut(s)	278, 1007, 1352
BsmI	GAATGC	4 cut(s)	1267, 1884, 2157, 2196
BsnI	GGCC	8 cut(s)	202, 592, 692, 963, 1238, 2091, 2477, 2598
BsoBI	CYCGRG	2 cut(s)	1850, 2593
Bsp120I	GGGCCC	1 cut(s)	590
Bsp1286I	GDGCHC	8 cut(s)	474, 594, 813, 1009, 1849, 2004, 2245, 2750
Bsp1407I	TGTACA	1 cut(s)	1062
Bsp143I	GATC	3 cut(s)	1315, 1494, 2306
Bsp19I	CCATGG	1 cut(s)	727
BspANI	GGCC	8 cut(s)	202, 592, 692, 963, 1238, 2091, 2477, 2598
BspCNI	CTCAG	6 cut(s)	27, 625, 775, 847, 889, 2070
BspFNI	CGCG	3 cut(s)	862, 1320, 2455
BspLI	GGNNCC	1 cut(s)	592
BspMAI	CTGCAG	4 cut(s)	682, 1219, 2659, 2724
BspMI	ACCTGC	1 cut(s)	635
BspPI	GGATC	1 cut(s)	1323
BspQI	GCTCTTC	1 cut(s)	1837
BsrBI	CCGCTC	3 cut(s)	255, 340, 850
BsrDI	GCAATG	3 cut(s)	869, 1210, 2536
BsrFI	RCCGGY	1 cut(s)	198
BsrGI	TGTACA	1 cut(s)	1062
BsrI	ACTGG	3 cut(s)	551, 2053, 2669
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	4 cut(s)	727, 1323, 1533, 2201
BssMI	GATC	3 cut(s)	1315, 1494, 2306
BssNAI	GTATAC	1 cut(s)	2533
BssNI	GRCGYC	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	1008
BssT1I	CCWWGG	2 cut(s)	727, 2201
Bst1107I	GTATAC	1 cut(s)	2533
Bst2BI	CACGAG	1 cut(s)	1008
Bst2UI	CCWGG	2 cut(s)	1535, 2093
Bst6I	CTCTTC	3 cut(s)	1134, 1837, 2242
BstACI	GRCGYC	1 cut(s)	63
BstAUI	TGTACA	1 cut(s)	1062
BstDEI	CTNAG	8 cut(s)	14, 633, 684, 783, 834, 897, 2078, 2761
BstDSI	CCRYGG	1 cut(s)	727
BstEII	GGTNACC	1 cut(s)	2170
BstENI	CCTNNNNNAGG	1 cut(s)	948
BstFNI	CGCG	3 cut(s)	862, 1320, 2455
BstH2I	RGCGCY	1 cut(s)	2402
BstHHI	GCGC	4 cut(s)	876, 1322, 2401, 2455
BstKTI	GATC	3 cut(s)	1318, 1497, 2309
BstMAI	GTCTC	5 cut(s)	116, 837, 1092, 1240, 1768
BstMBI	GATC	3 cut(s)	1315, 1494, 2306
BstNI	CCWGG	2 cut(s)	1535, 2093
BstNSI	RCATGY	5 cut(s)	1000, 1030, 1061, 1308, 2136
BstPI	GGTNACC	1 cut(s)	2170
BstSCI	CCNGG	3 cut(s)	472, 1533, 2091
BstSFI	CTRYAG	4 cut(s)	678, 1215, 2655, 2720
BstSLI	GKGCMC	2 cut(s)	594, 813
BstUI	CGCG	3 cut(s)	862, 1320, 2455
BstV1I	GCAGC	6 cut(s)	692, 1201, 1777, 2045, 2254, 2293
BstV2I	GAAGAC	2 cut(s)	1589, 2732
BstXI	CCANNNNNNTGG	1 cut(s)	2742
BstZ17I	GTATAC	1 cut(s)	2533
BsuI	GTATCC	1 cut(s)	880
BsuRI	GGCC	8 cut(s)	202, 592, 692, 963, 1238, 2091, 2477, 2598
BtgI	CCRYGG	1 cut(s)	727
BtsIMutI	CAGTG	8 cut(s)	342, 630, 823, 842, 1890, 2662, 2791, 2815
BveI	ACCTGC	1 cut(s)	635
CfoI	GCGC	4 cut(s)	876, 1322, 2401, 2455
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	6 cut(s)	201, 590, 591, 1735, 2089, 2596
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	1063
CspCI	CAANNNNNGTGG	4 cut(s)	684, 719, 1438, 1473
CviQI	GTAC	1 cut(s)	1063
DdeI	CTNAG	8 cut(s)	14, 633, 684, 783, 834, 897, 2078, 2761
DpnI	GATC	3 cut(s)	1317, 1496, 2308
DpnII	GATC	3 cut(s)	1315, 1494, 2306
EaeI	YGGCCR	1 cut(s)	690
Eam1104I	CTCTTC	3 cut(s)	1134, 1837, 2242
EarI	CTCTTC	3 cut(s)	1134, 1837, 2242
EciI	GGCGGA	3 cut(s)	43, 129, 405
Ecl136II	GAGCTC	1 cut(s)	2748
Eco130I	CCWWGG	2 cut(s)	727, 2201
Eco147I	AGGCCT	1 cut(s)	2477
Eco24I	GRGCYC	5 cut(s)	474, 594, 1849, 2245, 2750
Eco47I	GGWCC	1 cut(s)	1735
Eco47III	AGCGCT	1 cut(s)	2400
Eco53kI	GAGCTC	1 cut(s)	2748
Eco57I	CTGAAG	5 cut(s)	459, 1230, 1455, 2147, 2598
Eco88I	CYCGRG	2 cut(s)	1850, 2593
Eco91I	GGTNACC	1 cut(s)	2170
EcoICRI	GAGCTC	1 cut(s)	2748
EcoNI	CCTNNNNNAGG	1 cut(s)	948
EcoO109I	RGGNCCY	1 cut(s)	2089
EcoO65I	GGTNACC	1 cut(s)	2170
EcoRI	GAATTC	2 cut(s)	5, 481
EcoRII	CCWGG	2 cut(s)	1533, 2091
EcoT14I	CCWWGG	2 cut(s)	727, 2201
EcoT22I	ATGCAT	3 cut(s)	1002, 1639, 2025
EcoT38I	GRGCYC	5 cut(s)	474, 594, 1849, 2245, 2750
ErhI	CCWWGG	2 cut(s)	727, 2201
FaqI	GGGAC	3 cut(s)	278, 1007, 1352
FauI	CCCGC	4 cut(s)	292, 345, 843, 1761
FauNDI	CATATG	1 cut(s)	2113
FbaI	TGATCA	1 cut(s)	1494
FblI	GTMKAC	1 cut(s)	2532
FokI	GGATG	9 cut(s)	767, 1118, 1406, 1500, 1679, 1694, 1885, 1979, 2250
FriOI	GRGCYC	5 cut(s)	474, 594, 1849, 2245, 2750
FspBI	CTAG	3 cut(s)	363, 1979, 2835
FspI	TGCGCA	1 cut(s)	875
GlaI	GCGC	4 cut(s)	875, 1321, 2400, 2454
GsaI	CCCAGC	1 cut(s)	2511
GsuI	CTGGAG	3 cut(s)	1851, 2114, 2376
HaeII	RGCGCY	1 cut(s)	2402
HaeIII	GGCC	8 cut(s)	202, 592, 692, 963, 1238, 2091, 2477, 2598
HapII	CCGG	5 cut(s)	199, 474, 580, 1679, 2519
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	4 cut(s)	876, 1322, 2401, 2455
Hin1I	GRCGYC	1 cut(s)	63
Hin6I	GCGC	4 cut(s)	874, 1320, 2399, 2453
HinP1I	GCGC	4 cut(s)	874, 1320, 2399, 2453
HincII	GTYRAC	1 cut(s)	2637
HindII	GTYRAC	1 cut(s)	2637
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	5 cut(s)	607, 1188, 1446, 1556, 2627
HpaII	CCGG	5 cut(s)	199, 474, 580, 1679, 2519
HphI	GGTGA	6 cut(s)	982, 1174, 2054, 2164, 2264, 2861
Hpy166II	GTNNAC	9 cut(s)	1063, 1065, 2109, 2218, 2533, 2584, 2637, 2662, 2782
Hpy188I	TCNGA	9 cut(s)	157, 439, 487, 571, 612, 741, 1494, 2311, 2776
Hpy188III	TCNNGA	7 cut(s)	268, 553, 948, 1010, 1830, 1852, 1994
Hpy8I	GTNNAC	9 cut(s)	1063, 1065, 2109, 2218, 2533, 2584, 2637, 2662, 2782
Hpy99I	CGWCG	2 cut(s)	62, 68
HpyCH4IV	ACGT	2 cut(s)	1796, 2435
HpyF3I	CTNAG	8 cut(s)	14, 633, 684, 783, 834, 897, 2078, 2761
HpySE526I	ACGT	2 cut(s)	1796, 2435
Hsp92I	GRCGYC	1 cut(s)	63
HspAI	GCGC	4 cut(s)	874, 1320, 2399, 2453
KroI	GCCGGC	1 cut(s)	198
KroNI	GCCGGC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	1494
Kzo9I	GATC	3 cut(s)	1315, 1494, 2306
LguI	GCTCTTC	1 cut(s)	1837
LmnI	GCTCC	6 cut(s)	176, 487, 762, 1369, 2704, 2745
Lsp1109I	GCAGC	6 cut(s)	692, 1201, 1777, 2045, 2254, 2293
LweI	GCATC	5 cut(s)	1009, 1351, 1932, 2268, 2474
MaeI	CTAG	3 cut(s)	363, 1979, 2835
MaeII	ACGT	2 cut(s)	1796, 2435
MaeIII	GTNAC	4 cut(s)	1162, 1727, 2170, 2810
MalI	GATC	3 cut(s)	1317, 1496, 2308
MbiI	CCGCTC	3 cut(s)	255, 340, 850
MboI	GATC	3 cut(s)	1315, 1494, 2306
MhlI	GDGCHC	8 cut(s)	474, 594, 813, 1009, 1849, 2004, 2245, 2750
MlyI	GAGTC	1 cut(s)	1440
MmeI	TCCRAC	1 cut(s)	594
Mph1103I	ATGCAT	3 cut(s)	1002, 1639, 2025
MroNI	GCCGGC	1 cut(s)	198
MroXI	GAANNNNTTC	4 cut(s)	481, 1522, 2301, 2729
MslI	CAYNNNNRTG	6 cut(s)	816, 1083, 1117, 1151, 1406, 2028
MspA1I	CMGCKG	3 cut(s)	1562, 1768, 2507
MspI	CCGG	5 cut(s)	199, 474, 580, 1679, 2519
MspR9I	CCNGG	3 cut(s)	474, 1535, 2093
Mva1269I	GAATGC	4 cut(s)	1267, 1884, 2157, 2196
MvaI	CCWGG	2 cut(s)	1535, 2093
MvnI	CGCG	3 cut(s)	862, 1320, 2455
NaeI	GCCGGC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	474
NcoI	CCATGG	1 cut(s)	727
NdeI	CATATG	1 cut(s)	2113
NdeII	GATC	3 cut(s)	1315, 1494, 2306
NgoMIV	GCCGGC	1 cut(s)	198
NlaIV	GGNNCC	1 cut(s)	592
NmeAIII	GCCGAG	1 cut(s)	1348
NmuCI	GTSAC	3 cut(s)	1162, 2170, 2810
NsbI	TGCGCA	1 cut(s)	875
NsiI	ATGCAT	3 cut(s)	1002, 1639, 2025
NspI	RCATGY	5 cut(s)	1000, 1030, 1061, 1308, 2136
OliI	CACNNNNGTG	1 cut(s)	816
PaeI	GCATGC	1 cut(s)	1030
PaeR7I	CTCGAG	1 cut(s)	1850
PceI	AGGCCT	1 cut(s)	2477
PciI	ACATGT	1 cut(s)	1057
PciSI	GCTCTTC	1 cut(s)	1837
PcsI	WCGNNNNNNNCGW	1 cut(s)	1857
PctI	GAATGC	4 cut(s)	1267, 1884, 2157, 2196
PdiI	GCCGGC	1 cut(s)	200
PdmI	GAANNNNTTC	4 cut(s)	481, 1522, 2301, 2729
PfeI	GAWTC	4 cut(s)	607, 1188, 1556, 2627
PleI	GAGTC	1 cut(s)	1440
PpsI	GAGTC	1 cut(s)	1440
PscI	ACATGT	1 cut(s)	1057
PshBI	ATTAAT	2 cut(s)	279, 2228
PsiI	TTATAA	1 cut(s)	1706
Psp124BI	GAGCTC	1 cut(s)	2750
Psp6I	CCWGG	2 cut(s)	1533, 2091
PspEI	GGTNACC	1 cut(s)	2170
PspFI	CCCAGC	1 cut(s)	2507
PspGI	CCWGG	2 cut(s)	1533, 2091
PspN4I	GGNNCC	1 cut(s)	592
PspOMI	GGGCCC	1 cut(s)	590
PspPI	GGNCC	6 cut(s)	201, 590, 591, 1735, 2089, 2596
PstI	CTGCAG	4 cut(s)	682, 1219, 2659, 2724
PvuII	CAGCTG	2 cut(s)	1562, 2507
RsaI	GTAC	1 cut(s)	1064
RsaNI	GTAC	1 cut(s)	1063
RseI	CAYNNNNRTG	6 cut(s)	816, 1083, 1117, 1151, 1406, 2028
SacI	GAGCTC	1 cut(s)	2750
SapI	GCTCTTC	1 cut(s)	1837
Sau3AI	GATC	3 cut(s)	1315, 1494, 2306
Sau96I	GGNCC	6 cut(s)	201, 590, 591, 1735, 2089, 2596
SchI	GAGTC	1 cut(s)	1440
ScrFI	CCNGG	3 cut(s)	474, 1535, 2093
SduI	GDGCHC	8 cut(s)	474, 594, 813, 1009, 1849, 2004, 2245, 2750
SfaNI	GCATC	5 cut(s)	1009, 1351, 1932, 2268, 2474
SfcI	CTRYAG	4 cut(s)	678, 1215, 2655, 2720
Sfr274I	CTCGAG	1 cut(s)	1850
SinI	GGWCC	1 cut(s)	1735
SlaI	CTCGAG	1 cut(s)	1850
SmiMI	CAYNNNNRTG	6 cut(s)	816, 1083, 1117, 1151, 1406, 2028
SmlI	CTYRAG	3 cut(s)	1448, 1850, 2479
SmoI	CTYRAG	3 cut(s)	1448, 1850, 2479
SphI	GCATGC	1 cut(s)	1030
SseBI	AGGCCT	1 cut(s)	2477
SspI	AATATT	2 cut(s)	1282, 1962
SspMI	CTAG	3 cut(s)	363, 1979, 2835
SstI	GAGCTC	1 cut(s)	2750
StuI	AGGCCT	1 cut(s)	2477
StyD4I	CCNGG	3 cut(s)	472, 1533, 2091
StyI	CCWWGG	2 cut(s)	727, 2201
TaiI	ACGT	2 cut(s)	1799, 2438
TaqI	TCGA	6 cut(s)	711, 1851, 1860, 2245, 2305, 2669
TatI	WGTACW	1 cut(s)	1062
TauI	GCSGC	5 cut(s)	145, 148, 421, 511, 1939
TfiI	GAWTC	4 cut(s)	607, 1188, 1556, 2627
TscAI	CASTG	8 cut(s)	349, 637, 823, 842, 1897, 2669, 2791, 2815
TseFI	GTSAC	3 cut(s)	1162, 2170, 2810
TseI	GCWGC	6 cut(s)	680, 1214, 1765, 2033, 2267, 2281
Tsp45I	GTSAC	3 cut(s)	1162, 2170, 2810
TspGWI	ACGGA	2 cut(s)	1807, 2840
TspRI	CASTG	8 cut(s)	349, 637, 823, 842, 1897, 2669, 2791, 2815
VpaK11BI	GGWCC	1 cut(s)	1735
VspI	ATTAAT	2 cut(s)	279, 2228
XagI	CCTNNNNNAGG	1 cut(s)	948
XapI	RAATTY	6 cut(s)	5, 151, 248, 481, 535, 2855
XceI	RCATGY	5 cut(s)	1000, 1030, 1061, 1308, 2136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	700
XhoI	CTCGAG	1 cut(s)	1850
XmiI	GTMKAC	1 cut(s)	2532
XmnI	GAANNNNTTC	4 cut(s)	481, 1522, 2301, 2729
XspI	CTAG	3 cut(s)	363, 1979, 2835
Zsp2I	ATGCAT	3 cut(s)	1002, 1639, 2025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.