Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0011908

Physical Location & Seq

Genomic Coordinates Reverse (-)

19435142 .. 19443503

Gene Structure 8362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG114100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2259 bp

ATGGAGTTTTCAGTGTCCACCCCACGCTATTACTATCCCAATCCCAAACCCACTACTACCACCACCTCCTTTTCTCTCAAACCCCTTAATTCCCAAGCCTCCTCCTCCCCTCTCTCCTCATCTAACCAACTTCGTCGCCCCAAAACCATCACCACCACTCCTCCTCCTCAGCCCACCAAACCCATCTCCAAAATCCCCTCTAACCCCTTCAAGAACCTCACTAATCCCACCCATGTCCCCACTCCGCCGATTACCACTACCACCACCGATTCTAACACCTCTTCTCTCACTAACAAGCTCTGGCTCACCAGCAAGCTCTCTCCTCCTCCACCGCCACCAGACATAGAAGACGACGGCGACGACGACGAAGAAGAAGCAGTCAAGTACAATGAACCCAAAAAGAAATTATCGCAGCTGCCCAAAGTCGAGTTCCGGCAAGAGGGTAAGGTTTTCGTGGGGAATTTACCCAACTGGCTCAAGAAAAACGAGGTCTCCGAGTTCTTCCGGCAATTCGGACCGATAACGAATGTGATTCTGATCAAGGGCCACGACAGCACTGAGAGAAATGCGGGCTTCGGATTCGTTATATACGGCGGCCCCAATGCGACCAAGTCTGCCATGAAGGCGGTGGAGTTTGACGGCGTGGAGTTCCACGGGAGGGTTCTGACTGTTAAGTTGGACGATGGGGGCAGATTGAAGGACAAAGCTGAGCAGAGGACGCGGTGGATTGAGCAAGACTCCGGCGACGGTGTTGAGTACCGAGCTCGGTCTAAGTGGCACAAGGAGAGGCAGAGCTCTCGCAATGCCTTGCGCAAGGTTATGGAGACGGAGCCGGAGAACTGGCAGGCGGTGGTTCAGACTTTTGAGAGGATTAACAAGCCTTCTAGAGGAGAGTATGGTCTGATGGTCAAGTATTATGCTAGGCGAGGGGACATGCATCGTGCTCGTGAAACATTTGAGAGCATGAGAGCAAGAGGAATAGAGCCGACTTCACATGTATACACAAGCCTGATTCACGCTTATGCAGTTGGCAGAGACATGGAAGAAGCATTATCTTGTGTTAGAAAAATGAAGGACGAGGGCATTGAAATGAGTTTGGTGACTTACAGTATTGTTGTTGGGGGATTTGCAAAAATTGGCAATGCCGAAGCTGCAGATCACTGGTTTAAGGAGGCCAAAGAGAGACATACAACTTTAAATGCAATCATTTATGGGAATATTGTTTATGCTCATTGTCAAGCATGTAATATGGATCGAGCTGAGGCATTGGTACGGGAAATGGAAGAAGCAGGTATAGATGCTCCTATCGACATATATCACACCATGATGGATGGTTACACAATGGTTGGCAATGAAGATAAATGTTTGATTGTGTTTGAGCGACTGAAGGAATGCGGCTTTACACCTTCTGTCATCAGTTATGGATGTCTGATCAATCTTTACATCAAGGTTGGAAAAGTTTCTAAAGCATTGGAAGTCAGCAAAATGATGGAAACAGCCAGCATAAAACATAACATGAAGACGTACTCCATGTTGATCAATGGATTCTTGAAGTTAAAAGACTGGGCTAATGCATTTGCAGTTATAGAAGATTTGATGAAGGATGGTTTGAAGCCCGATGTAGTCCTGTATAATAACATTATAAAAGCATTTTGTGGAATGGGTAACATGAATCGCGCTGTTCGCACCGTCAAAGAAATGCAGAGGGAGAGGCATAGACCTACATCACGTACGTTTATGCCGATAATACATGGTTTTGCAAGAGCTGGAGATATGAGAAGAGCCCTAGAGATTTTTGACATGATGAGGATGAGTGGATGCATTCCAACTGTCCATACTTTCAATGCTCTAGTTCTTGGTCTTGTGGAGAAGCGGCAGATGGAGAAGGCTGTTGAAATATTGGATGAGATGACACTTGCAGGCATTAGTCCAAATGAACACACATACACAACTATCATGAATGGTTATGCATCTTTAGGTGATACTGGGAAAGCTTTCGAGTATTTTTCCAAATTGAGGAATGATGGCCTAGAGATTGATGTTTTCACATATGAGGCATTGCTGAAGGCATGTTGCAAAGCAGGCAAAATGCAGAGTGCTTTAGCTGTCACCAAGGAAATGAGTGCTCAAAAAATTCCAAGGAACACCTTCGTGTACAACATATTAGTTGATGGGTATGGTTTGTTAAAAATCTTGATGTCCTCTGATATACTTCAAACAATCACACTGTCATCTGTCTTTAACCTACTGTTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 RRM_1

Protein Analysis

752

Amino Acids

84.77

Weight (kDa)

8.75

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	150 - 222	1.7e-11	RNA recognition motif
PPR_2	PF13041	301 - 342	2e-08	PPR repeat family
TPR_24	PF23276	307 - 413	2.9e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	312 - 385	2.1e-07	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	333 - 362	4.6e-06	PPR repeat
PPR_3	PF13812	334 - 374	4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	334 - 378	3e-09	PPR repeat family
PPR_3	PF13812	423 - 481	2.1e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	458 - 566	2.4e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	469 - 518	3.3e-10	PPR repeat family
PPR_long	PF17177	523 - 617	3.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	528 - 582	3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	535 - 568	2.9e-08	PPR repeat
PPR_2	PF13041	539 - 588	3.6e-11	PPR repeat family
PPR_long	PF17177	571 - 713	5.5e-14	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	574 - 621	3.3e-09	PPR repeat family
TPR_24	PF23276	576 - 671	2.1e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	578 - 618	4.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	609 - 657	6.3e-14	PPR repeat family
PPR_2	PF13041	648 - 693	1.5e-10	PPR repeat family
PPR_3	PF13812	670 - 727	1.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	675 - 708	7.6e-07	PPR repeat
PPR_2	PF13041	680 - 726	5.1e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04810 AT5G04810
fragaria_vesca	FvH4_7g06690
malus_domestica	MD07G1061700.v1.1
prunus_persica	Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1
pyrus_communis	pycom07g04720
rosa_chinensis	RchiOBHm_Chr1g0336351
rosa_laevigata	RLG00000029372
rosa_multiflora	Rmu_sc0005261.1_g000013 Rmu_sc0005480.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315730
rosa_rugosa	Rorug01G0125300
rosa_samantha	Rh1AG144500 Rh1BG114100 Rh1CG136000 Rh1DG151200
rosa_wichuraiana	Rw1G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1643
Acc16I	TGCGCA	1 cut(s)	812
Acc36I	ACCTGC	1 cut(s)	1280
AccI	GTMKAC	1 cut(s)	999
AccII	CGCG	2 cut(s)	721, 1677
AciI	CCGC	9 cut(s)	245, 332, 569, 594, 626, 721, 848, 1395, 1873
AclWI	GGATC	1 cut(s)	1260
AcsI	RAATTY	2 cut(s)	460, 2133
AcuI	CTGAAG	2 cut(s)	1406, 2084
AfaI	GTAC	6 cut(s)	386, 758, 1272, 1526, 1732, 2156
AfiI	CCNNNNNNNGG	4 cut(s)	439, 658, 887, 2016
AflIII	ACRYGT	1 cut(s)	994
AgsI	TTSAA	8 cut(s)	211, 697, 1088, 1552, 1612, 1843, 1895, 2216
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AleI	CACNNNNGTG	1 cut(s)	2150
Alw21I	GWGCWC	4 cut(s)	766, 797, 946, 2128
Alw26I	GTCTC	4 cut(s)	496, 818, 1029, 1177
AlwI	GGATC	1 cut(s)	1260
AoxI	GGCC	4 cut(s)	544, 595, 1173, 2026
ApeKI	GCWGC	3 cut(s)	412, 415, 1151
ApoI	RAATTY	2 cut(s)	460, 2133
Asp700I	GAANNNNTTC	3 cut(s)	1459, 1994, 2147
AspLEI	GCGC	2 cut(s)	813, 1679
AspS9I	GGNCC	3 cut(s)	515, 544, 596
AsuHPI	GGTGA	5 cut(s)	142, 298, 1111, 1991, 2101
AvaII	GGWCC	1 cut(s)	515
BanII	GRGCYC	3 cut(s)	766, 797, 1786
BauI	CACGAG	1 cut(s)	945
BbsI	GAAGAC	2 cut(s)	354, 1526
Bbv12I	GWGCWC	4 cut(s)	766, 797, 946, 2128
BbvCI	CCTCAGC	2 cut(s)	168, 1260
BbvI	GCAGC	3 cut(s)	402, 424, 1138
BceAI	ACGGC	3 cut(s)	370, 607, 655
BcgI	CGANNNNNNTGC	4 cut(s)	779, 813, 926, 960
BclI	TGATCA	3 cut(s)	537, 1431, 1536
BcoDI	GTCTC	4 cut(s)	496, 818, 1029, 1177
BfaI	CTAG	5 cut(s)	885, 921, 1787, 1850, 2030
BfmI	CTRYAG	1 cut(s)	1152
BfuAI	ACCTGC	1 cut(s)	1280
BglI	GCCNNNNNGGC	1 cut(s)	623
BisI	GCNGC	6 cut(s)	413, 416, 595, 1152, 1396, 1874
BlpI	GCTNAGC	1 cut(s)	708
BlsI	GCNGC	6 cut(s)	414, 417, 596, 1153, 1397, 1875
Bme18I	GGWCC	1 cut(s)	515
BmgT120I	GGNCC	3 cut(s)	515, 544, 596
BmiI	GGNNCC	2 cut(s)	598, 831
BmrI	ACTGGG	2 cut(s)	1573, 1995
BmsI	GCATC	4 cut(s)	946, 1288, 1808, 1979
BmuI	ACTGGG	2 cut(s)	1573, 1995
BpiI	GAAGAC	2 cut(s)	354, 1526
BplI	GAGNNNNNCTC	2 cut(s)	722, 754
BpmI	CTGGAG	1 cut(s)	1788
Bpu10I	CCTNAGC	2 cut(s)	168, 1260
Bpu1102I	GCTNAGC	1 cut(s)	708
BpuEI	CTTGAG	1 cut(s)	461
BsaAI	YACGTR	1 cut(s)	1730
BsaBI	GATNNNNATC	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	3 cut(s)	652, 2112, 2138
BsaXI	ACNNNNNCTCC	8 cut(s)	142, 145, 148, 172, 175, 178, 476, 506
Bsc4I	CCNNNNNNNGG	4 cut(s)	439, 658, 887, 2016
Bse1I	ACTGG	5 cut(s)	476, 845, 1166, 1568, 1990
Bse3DI	GCAATG	4 cut(s)	808, 1147, 1357, 2057
Bse8I	GATNNNNATC	1 cut(s)	536
BseDI	CCNNGG	3 cut(s)	652, 2112, 2138
BseGI	GGATG	6 cut(s)	1336, 1430, 1609, 1815, 1823, 1909
BseJI	GATNNNNATC	1 cut(s)	536
BseLI	CCNNNNNNNGG	4 cut(s)	439, 658, 887, 2016
BseMI	GCAATG	4 cut(s)	808, 1147, 1357, 2057
BseMII	CTCAG	4 cut(s)	182, 549, 699, 1251
BseNI	ACTGG	5 cut(s)	476, 845, 1166, 1568, 1990
BseRI	GAGGAG	9 cut(s)	91, 94, 106, 150, 153, 156, 312, 315, 903
BseXI	GCAGC	3 cut(s)	402, 424, 1138
Bsh1236I	CGCG	2 cut(s)	721, 1677
BshFI	GGCC	4 cut(s)	546, 597, 1175, 2028
BsiHKAI	GWGCWC	4 cut(s)	766, 797, 946, 2128
BsiSI	CCGG	4 cut(s)	433, 505, 741, 833
BsiWI	CGTACG	1 cut(s)	1730
BslFI	GGGAC	2 cut(s)	221, 944
BslI	CCNNNNNNNGG	4 cut(s)	439, 658, 887, 2016
BsmAI	GTCTC	4 cut(s)	496, 818, 1029, 1177
BsmBI	CGTCTC	1 cut(s)	818
BsmFI	GGGAC	2 cut(s)	221, 944
BsmI	GAATGC	2 cut(s)	1397, 1821
BsnI	GGCC	4 cut(s)	546, 597, 1175, 2028
Bso31I	GGTCTC	1 cut(s)	496
Bsp1286I	GDGCHC	5 cut(s)	766, 797, 946, 1786, 2128
Bsp1407I	TGTACA	1 cut(s)	2154
Bsp143I	GATC	5 cut(s)	537, 1156, 1252, 1431, 1536
Bsp1720I	GCTNAGC	1 cut(s)	708
BspACI	CCGC	9 cut(s)	245, 332, 569, 594, 626, 721, 848, 1395, 1873
BspANI	GGCC	4 cut(s)	546, 597, 1175, 2028
BspCNI	CTCAG	4 cut(s)	181, 550, 700, 1252
BspFNI	CGCG	2 cut(s)	721, 1677
BspHI	TCATGA	1 cut(s)	1956
BspLI	GGNNCC	2 cut(s)	598, 831
BspMAI	CTGCAG	1 cut(s)	1156
BspMI	ACCTGC	1 cut(s)	1280
BspPI	GGATC	1 cut(s)	1260
BspQI	GCTCTTC	1 cut(s)	1774
BspTNI	GGTCTC	1 cut(s)	496
BsrDI	GCAATG	4 cut(s)	808, 1147, 1357, 2057
BsrGI	TGTACA	1 cut(s)	2154
BsrI	ACTGG	5 cut(s)	476, 845, 1166, 1568, 1990
BssECI	CCNNGG	3 cut(s)	652, 2112, 2138
BssMI	GATC	5 cut(s)	537, 1156, 1252, 1431, 1536
BssNAI	GTATAC	1 cut(s)	1000
BssSI	CACGAG	1 cut(s)	945
BssT1I	CCWWGG	2 cut(s)	2112, 2138
Bst1107I	GTATAC	1 cut(s)	1000
Bst2BI	CACGAG	1 cut(s)	945
Bst4CI	ACNGT	7 cut(s)	670, 749, 1109, 1690, 1831, 2229, 2250
Bst6I	CTCTTC	2 cut(s)	286, 1774
BstAUI	TGTACA	1 cut(s)	2154
BstBAI	YACGTR	1 cut(s)	1730
BstC8I	GCNNGC	6 cut(s)	314, 571, 846, 1501, 1921, 2083
BstDEI	CTNAG	5 cut(s)	168, 558, 708, 771, 1260
BstDSI	CCRYGG	1 cut(s)	652
BstENI	CCTNNNNNAGG	1 cut(s)	885
BstF5I	GGATG	6 cut(s)	1336, 1430, 1609, 1815, 1823, 1909
BstFNI	CGCG	2 cut(s)	721, 1677
BstHHI	GCGC	2 cut(s)	813, 1679
BstKTI	GATC	5 cut(s)	540, 1159, 1255, 1434, 1539
BstMAI	GTCTC	4 cut(s)	496, 818, 1029, 1177
BstMBI	GATC	5 cut(s)	537, 1156, 1252, 1431, 1536
BstMWI	GCNNNNNNNGC	6 cut(s)	552, 623, 718, 1151, 1683, 2082
BstNSI	RCATGY	4 cut(s)	937, 998, 1245, 2073
BstSFI	CTRYAG	1 cut(s)	1152
BstUI	CGCG	2 cut(s)	721, 1677
BstV1I	GCAGC	3 cut(s)	402, 424, 1138
BstV2I	GAAGAC	2 cut(s)	354, 1526
BstZ17I	GTATAC	1 cut(s)	1000
BsuRI	GGCC	4 cut(s)	546, 597, 1175, 2028
BtgI	CCRYGG	1 cut(s)	652
BtsCI	GGATG	6 cut(s)	1336, 1430, 1609, 1815, 1823, 1909
BtsIMutI	CAGTG	4 cut(s)	18, 555, 1159, 2225
BveI	ACCTGC	1 cut(s)	1280
Cac8I	GCNNGC	6 cut(s)	314, 571, 846, 1501, 1921, 2083
CciI	TCATGA	1 cut(s)	1956
CfoI	GCGC	2 cut(s)	813, 1679
Cfr13I	GGNCC	3 cut(s)	515, 544, 596
CpoI	CGGWCCG	1 cut(s)	515
CseI	GACGC	1 cut(s)	727
Csp6I	GTAC	6 cut(s)	385, 757, 1271, 1525, 1731, 2155
CspI	CGGWCCG	1 cut(s)	515
CviQI	GTAC	6 cut(s)	385, 757, 1271, 1525, 1731, 2155
DdeI	CTNAG	5 cut(s)	168, 558, 708, 771, 1260
DpnI	GATC	5 cut(s)	539, 1158, 1254, 1433, 1538
DpnII	GATC	5 cut(s)	537, 1156, 1252, 1431, 1536
DraI	TTTAAA	1 cut(s)	1197
Eam1104I	CTCTTC	2 cut(s)	286, 1774
EarI	CTCTTC	2 cut(s)	286, 1774
EciI	GGCGGA	1 cut(s)	234
Ecl136II	GAGCTC	2 cut(s)	764, 795
Eco130I	CCWWGG	2 cut(s)	2112, 2138
Eco24I	GRGCYC	3 cut(s)	766, 797, 1786
Eco31I	GGTCTC	1 cut(s)	496
Eco47I	GGWCC	1 cut(s)	515
Eco53kI	GAGCTC	2 cut(s)	764, 795
Eco57I	CTGAAG	2 cut(s)	1406, 2084
EcoICRI	GAGCTC	2 cut(s)	764, 795
EcoNI	CCTNNNNNAGG	1 cut(s)	885
EcoT14I	CCWWGG	2 cut(s)	2112, 2138
EcoT22I	ATGCAT	4 cut(s)	939, 1576, 1823, 1972
EcoT38I	GRGCYC	3 cut(s)	766, 797, 1786
ErhI	CCWWGG	2 cut(s)	2112, 2138
Esp3I	CGTCTC	1 cut(s)	818
FaqI	GGGAC	2 cut(s)	221, 944
FauI	CCCGC	1 cut(s)	562
FauNDI	CATATG	1 cut(s)	2050
FbaI	TGATCA	3 cut(s)	537, 1431, 1536
FblI	GTMKAC	1 cut(s)	999
Fnu4HI	GCNGC	6 cut(s)	413, 416, 595, 1152, 1396, 1874
FokI	GGATG	6 cut(s)	1343, 1437, 1616, 1822, 1830, 1916
FriOI	GRGCYC	3 cut(s)	766, 797, 1786
Fsp4HI	GCNGC	6 cut(s)	413, 416, 595, 1152, 1396, 1874
FspBI	CTAG	5 cut(s)	885, 921, 1787, 1850, 2030
FspI	TGCGCA	1 cut(s)	812
GlaI	GCGC	2 cut(s)	812, 1678
GluI	GCNGC	6 cut(s)	413, 416, 595, 1152, 1396, 1874
GsuI	CTGGAG	1 cut(s)	1788
HaeIII	GGCC	4 cut(s)	546, 597, 1175, 2028
HapII	CCGG	4 cut(s)	433, 505, 741, 833
HgaI	GACGC	1 cut(s)	727
HhaI	GCGC	2 cut(s)	813, 1679
Hin6I	GCGC	2 cut(s)	811, 1677
HinP1I	GCGC	2 cut(s)	811, 1677
HindIII	AAGCTT	1 cut(s)	1992
HinfI	GANTC	7 cut(s)	269, 532, 579, 737, 1012, 1545, 1672
HpaII	CCGG	4 cut(s)	433, 505, 741, 833
HphI	GGTGA	5 cut(s)	142, 298, 1111, 1991, 2101
Hpy166II	GTNNAC	3 cut(s)	18, 1000, 2155
Hpy188I	TCNGA	9 cut(s)	496, 515, 537, 578, 666, 858, 903, 1431, 2206
Hpy188III	TCNNGA	7 cut(s)	211, 478, 885, 947, 1549, 1957, 2194
Hpy8I	GTNNAC	3 cut(s)	18, 1000, 2155
Hpy99I	CGWCG	6 cut(s)	138, 356, 362, 365, 368, 749
HpyCH4III	ACNGT	7 cut(s)	670, 749, 1109, 1690, 1831, 2229, 2250
HpyCH4IV	ACGT	3 cut(s)	1523, 1729, 1733
HpyF10VI	GCNNNNNNNGC	6 cut(s)	552, 623, 718, 1151, 1683, 2082
HpyF3I	CTNAG	5 cut(s)	168, 558, 708, 771, 1260
HpySE526I	ACGT	3 cut(s)	1523, 1729, 1733
HspAI	GCGC	2 cut(s)	811, 1677
Ksp22I	TGATCA	3 cut(s)	537, 1431, 1536
Kzo9I	GATC	5 cut(s)	537, 1156, 1252, 1431, 1536
LguI	GCTCTTC	1 cut(s)	1774
LmnI	GCTCC	2 cut(s)	829, 1306
Lsp1109I	GCAGC	3 cut(s)	402, 424, 1138
LweI	GCATC	4 cut(s)	946, 1288, 1808, 1979
MaeI	CTAG	5 cut(s)	885, 921, 1787, 1850, 2030
MaeII	ACGT	3 cut(s)	1523, 1729, 1733
MaeIII	GTNAC	4 cut(s)	1099, 1334, 1664, 2107
MalI	GATC	5 cut(s)	539, 1158, 1254, 1433, 1538
MboI	GATC	5 cut(s)	537, 1156, 1252, 1431, 1536
MhlI	GDGCHC	5 cut(s)	766, 797, 946, 1786, 2128
MluCI	AATT	7 cut(s)	88, 404, 460, 509, 1134, 2012, 2133
MlyI	GAGTC	1 cut(s)	731
MmeI	TCCRAC	3 cut(s)	657, 1432, 1850
Mph1103I	ATGCAT	4 cut(s)	939, 1576, 1823, 1972
MroXI	GAANNNNTTC	3 cut(s)	1459, 1994, 2147
MseI	TTAA	9 cut(s)	87, 672, 873, 1167, 1196, 1556, 2186, 2241, 2257
MslI	CAYNNNNRTG	4 cut(s)	1020, 1088, 1325, 2150
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	4 cut(s)	433, 505, 741, 833
Mva1269I	GAATGC	2 cut(s)	1397, 1821
MvnI	CGCG	2 cut(s)	721, 1677
MwoI	GCNNNNNNNGC	6 cut(s)	552, 623, 718, 1151, 1683, 2082
NdeI	CATATG	1 cut(s)	2050
NdeII	GATC	5 cut(s)	537, 1156, 1252, 1431, 1536
NlaIV	GGNNCC	2 cut(s)	598, 831
NmuCI	GTSAC	2 cut(s)	1099, 2107
NsbI	TGCGCA	1 cut(s)	812
NsiI	ATGCAT	4 cut(s)	939, 1576, 1823, 1972
NspI	RCATGY	4 cut(s)	937, 998, 1245, 2073
OliI	CACNNNNGTG	1 cut(s)	2150
PagI	TCATGA	1 cut(s)	1956
PciI	ACATGT	1 cut(s)	994
PciSI	GCTCTTC	1 cut(s)	1774
PcsI	WCGNNNNNNNCGW	4 cut(s)	357, 360, 492, 1739
PctI	GAATGC	2 cut(s)	1397, 1821
PdmI	GAANNNNTTC	3 cut(s)	1459, 1994, 2147
PfeI	GAWTC	6 cut(s)	269, 532, 579, 1012, 1545, 1672
Pfl23II	CGTACG	1 cut(s)	1730
PflFI	GACNNNGTC	1 cut(s)	610
PkrI	GCNGC	6 cut(s)	414, 417, 596, 1153, 1397, 1875
PleI	GAGTC	1 cut(s)	731
PpsI	GAGTC	1 cut(s)	731
Ppu21I	YACGTR	1 cut(s)	1730
PscI	ACATGT	1 cut(s)	994
PsiI	TTATAA	1 cut(s)	1643
Psp124BI	GAGCTC	2 cut(s)	766, 797
PspLI	CGTACG	1 cut(s)	1730
PspN4I	GGNNCC	2 cut(s)	598, 831
PspPI	GGNCC	3 cut(s)	515, 544, 596
PstI	CTGCAG	1 cut(s)	1156
PsyI	GACNNNGTC	1 cut(s)	610
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	6 cut(s)	386, 758, 1272, 1526, 1732, 2156
RsaNI	GTAC	6 cut(s)	385, 757, 1271, 1525, 1731, 2155
RseI	CAYNNNNRTG	4 cut(s)	1020, 1088, 1325, 2150
Rsr2I	CGGWCCG	1 cut(s)	515
RsrII	CGGWCCG	1 cut(s)	515
SacI	GAGCTC	2 cut(s)	766, 797
SapI	GCTCTTC	1 cut(s)	1774
SaqAI	TTAA	9 cut(s)	87, 672, 873, 1167, 1196, 1556, 2186, 2241, 2257
SatI	GCNGC	6 cut(s)	413, 416, 595, 1152, 1396, 1874
Sau3AI	GATC	5 cut(s)	537, 1156, 1252, 1431, 1536
Sau96I	GGNCC	3 cut(s)	515, 544, 596
SchI	GAGTC	1 cut(s)	731
SduI	GDGCHC	5 cut(s)	766, 797, 946, 1786, 2128
SfaNI	GCATC	4 cut(s)	946, 1288, 1808, 1979
SfcI	CTRYAG	1 cut(s)	1152
SinI	GGWCC	1 cut(s)	515
SmiMI	CAYNNNNRTG	4 cut(s)	1020, 1088, 1325, 2150
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	7 cut(s)	88, 404, 460, 509, 1134, 2012, 2133
SsiI	CCGC	9 cut(s)	245, 332, 569, 594, 626, 721, 848, 1395, 1873
SspI	AATATT	2 cut(s)	1219, 1899
SspMI	CTAG	5 cut(s)	885, 921, 1787, 1850, 2030
SstI	GAGCTC	2 cut(s)	766, 797
StyI	CCWWGG	2 cut(s)	2112, 2138
TaaI	ACNGT	7 cut(s)	670, 749, 1109, 1690, 1831, 2229, 2250
TaiI	ACGT	3 cut(s)	1526, 1732, 1736
TaqI	TCGA	4 cut(s)	426, 1255, 1308, 1998
TaqII	GACCGA	2 cut(s)	532, 756
TasI	AATT	7 cut(s)	88, 404, 460, 509, 1134, 2012, 2133
TatI	WGTACW	2 cut(s)	384, 2154
TauI	GCSGC	3 cut(s)	597, 1398, 1876
TfiI	GAWTC	6 cut(s)	269, 532, 579, 1012, 1545, 1672
Tru1I	TTAA	9 cut(s)	87, 672, 873, 1167, 1196, 1556, 2186, 2241, 2257
Tru9I	TTAA	9 cut(s)	87, 672, 873, 1167, 1196, 1556, 2186, 2241, 2257
TscAI	CASTG	4 cut(s)	18, 562, 1166, 2232
TseFI	GTSAC	2 cut(s)	1099, 2107
TseI	GCWGC	3 cut(s)	412, 415, 1151
Tsp45I	GTSAC	2 cut(s)	1099, 2107
TspDTI	ATGAA	9 cut(s)	405, 635, 1085, 1368, 1532, 1613, 1685, 1950, 1973
TspGWI	ACGGA	1 cut(s)	842
TspRI	CASTG	4 cut(s)	18, 562, 1166, 2232
Tth111I	GACNNNGTC	1 cut(s)	610
VpaK11BI	GGWCC	1 cut(s)	515
XagI	CCTNNNNNAGG	1 cut(s)	885
XapI	RAATTY	2 cut(s)	460, 2133
XbaI	TCTAGA	1 cut(s)	884
XceI	RCATGY	4 cut(s)	937, 998, 1245, 2073
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XmiI	GTMKAC	1 cut(s)	999
XmnI	GAANNNNTTC	3 cut(s)	1459, 1994, 2147
XspI	CTAG	5 cut(s)	885, 921, 1787, 1850, 2030
Zsp2I	ATGCAT	4 cut(s)	939, 1576, 1823, 1972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.