Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011908

Physical Location & Seq

Genomic Coordinates Reverse (-)

27331463 .. 27340224

Gene Structure 8762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG144500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2250 bp

ATGGAGTTTTCAGTGTCCACCCCACGCTATTACTATCCCAATCCCAAACCCAAACCCACTACTACCACCACCACCTTTTCTCTCAAACCCCCAAATTCCCAAGCCTCCTCCTCCCCTCTCTCCTCATCTAACCAACTTCGTCGCCCCAAAACCATCACCACTCCTCCCCCTCCTCAGCCCACCAAACCCATCTCCAAAATCCCCTCTAACCCCTTCAAGAACCTCACTAATCCCACCCATGTCCCCACTCCACCGATTATTACCACCACCGATTCTAACAGCTCTTCTCTCACCAACAAGCTCTGGCTCACCAGCAAGCTCTCTCCTCCTCCACCGCCACCAGACATAGAAGACGACGACGAAGAAGAAGCAGTCAAGTACAATGAACCCATAAAGAAATCGCAGCTGCCCAAAGTCGAGTTCCGGCAAGAGGGTAAGATTTTCGTGGGGAATTTGCCCAACTGGCTCAAGAAAAACGAGGTCTCCGAGTTTTTCCGGCAATTCGGACCGATAACGAATGTGATTCTGATCAAGGGCCATGACAGCACTGAGAGAAATGCGGGCTTCGGATTCGTTATATACGGCGGCCCCAATGCGACCAAGTCTGCCATGAAGGCGGTGGAGTTCGACGGCGTGGAGTTTCACGGGAGGGTTCTGACTGTTAAGTTGGACGATGGGGGCAGATTGAAGGACAAAGCTGAGCGGAGGACGCGGTGGATTGAGCAAGACTCCGGCGACGGTGTTGAGTACCGAGCTCGGTCTAAGTGGCACAAGGAGAGGCAGAGCTCTCGCAATGCCTTGCGGAAGGTTATGGAGACGGAGCCGGAGAACTGGCAGGCGGTGGTTCAGACTTTTGAGAGGATTAACAAGCCTTCTAGAGGAGAGTATGGTCTGATGGTCAAGTATTATGCTAGGCGAGGGGACATGCATCGTGCTCGTGAAACATTTGAGAGCATGAGAGCAAGAGGAATAGAGCCGACTTCACATGTATACACAAGCCTGATTCACGCTTATGCAGTTGGCAGAGACATGGAAGAAGCATTATCTTGTGTTAGAAAAATGAAGGATGAGGGCATTGAAATGAGTTTGGTGACTTACAGTATTATTGTTGGGGGATTTGCAAAAGTTGGCAATGCCGAAGCTGCAGATCACTGGTTTAAGGAGGCCAAAGAGAGACATACAACTTTAAATGCAATCATTTATGGGAATATTGTTTATGCACATTGTCAATCATGTAATATGGATCGAGCTGAGGCATTGGTACGAGAAATGGAAGAAGCAGGTATAGATGCTCCTATCGACATATATCACACCATGATGGATGGTTACACAATGGTTGGCAATGAAGATAAATGTTTGATTGTGTTTGAGCGACTGAAGGAATGCGGCTTTACACCTTCTGTCATCAGTTATGGATGTCTGATCAATCTTTACATCAAGGTTGGAAAAGTTTCTAAGGCATTGGAAGTCAGCAAAATGATGGAAACAGCTAGCATAAAACATAACATGAAGACGTACTCCATGTTGATCAATGGATTCTTGAAGTTAAAAGACTGGGCTAATGCATTTGCAGTTGTAGAAGATTTGATGAAGGATGGTTTGAAGCCCGATGTAGTCCTGTATAATAACATTATAACAGCATTTTGTGGAATGGGTAACATGAATCGCGCTGTTCGCACCGTCAAAGAAATGCAGAGGGAGAGGCATAGACCTACATCACGTACGTTTATGCCAATAATACATGGTTTTGCAAGAGCTGGAGATATGAGAAGAGCCCTAGAGATTTTTGACATGATGCGGATGAGTGGATGCATTCCAACTGTCCATACTTTCAATGCTCTAGTTCTTGGTCTTGTGGAGAAGCGGCAGATGGAGAAGGCTGTTGAAATATTGGATGAGATGACAATTGCAGGAATTAGTCCAAATGAACACACATACACAACTATCATGAATGGTTATGCATCTTTAGGTGATACTGGGAAAGCTTTCGAGTATTTTTCCAAATTGAGGAATGATGGCCTAGAGATTGATGTTTTCACATATGAGGCATTGCTGAAGGCATGTTGCAAAGCAGGCAAAATGCAGAGTGCTTTAGCTGTCACCAAGGAAATGAGTGCTCAAAAAATTCCAAGGAACACCTTTGTGTACAACATCTTAGTTGATGGGTATGGTTTGTTAAAAATCTTGATGTCCTCTGATATACTTCAAACAATCACACTGTCATCTGTCTTTAACCTACTGTTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 RRM_1

Protein Analysis

749

Amino Acids

84.49

Weight (kDa)

8.88

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	147 - 219	1.5e-11	RNA recognition motif
PPR_2	PF13041	298 - 339	2e-08	PPR repeat family
TPR_24	PF23276	304 - 413	1.2e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	309 - 382	2.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	330 - 375	1e-09	PPR repeat family
PPR	PF01535	330 - 359	4.6e-06	PPR repeat
PPR_3	PF13812	331 - 373	8.2e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	420 - 478	1.9e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	455 - 563	5.3e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	466 - 515	3.2e-10	PPR repeat family
PPR_3	PF13812	525 - 580	6.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	532 - 565	6.9e-08	PPR repeat
PPR_2	PF13041	536 - 585	4.3e-11	PPR repeat family
PPR_2	PF13041	571 - 618	3.3e-09	PPR repeat family
TPR_24	PF23276	573 - 668	2.2e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	575 - 615	4.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	606 - 654	7.1e-14	PPR repeat family
PPR_2	PF13041	645 - 690	1.5e-10	PPR repeat family
PPR_3	PF13812	667 - 724	1.8e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	672 - 705	7.6e-07	PPR repeat
PPR_2	PF13041	677 - 723	5.1e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04810 AT5G04810
fragaria_vesca	FvH4_7g06690
malus_domestica	MD07G1061700.v1.1
prunus_persica	Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1
pyrus_communis	pycom07g04720
rosa_chinensis	RchiOBHm_Chr1g0336351
rosa_laevigata	RLG00000029372
rosa_multiflora	Rmu_sc0005261.1_g000013 Rmu_sc0005480.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315730
rosa_rugosa	Rorug01G0125300
rosa_samantha	Rh1AG144500 Rh1BG114100 Rh1CG136000 Rh1DG151200
rosa_wichuraiana	Rw1G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1634
Acc36I	ACCTGC	1 cut(s)	1271
AccBSI	CCGCTC	1 cut(s)	703
AccI	GTMKAC	1 cut(s)	990
AccII	CGCG	2 cut(s)	712, 1668
AclWI	GGATC	1 cut(s)	1251
AcsI	RAATTY	3 cut(s)	94, 451, 2124
AcuI	CTGAAG	2 cut(s)	1397, 2075
AfaI	GTAC	6 cut(s)	380, 749, 1263, 1517, 1723, 2147
AfiI	CCNNNNNNNGG	3 cut(s)	430, 878, 2007
AflIII	ACRYGT	1 cut(s)	985
AgsI	TTSAA	8 cut(s)	217, 688, 1079, 1543, 1603, 1834, 1886, 2207
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AleI	CACNNNNGTG	1 cut(s)	2141
Alw21I	GWGCWC	4 cut(s)	757, 788, 937, 2119
Alw26I	GTCTC	4 cut(s)	487, 809, 1020, 1168
AlwI	GGATC	1 cut(s)	1251
AoxI	GGCC	4 cut(s)	535, 586, 1164, 2017
ApeKI	GCWGC	3 cut(s)	403, 406, 1142
ApoI	RAATTY	3 cut(s)	94, 451, 2124
Asp700I	GAANNNNTTC	2 cut(s)	1450, 1985
AspLEI	GCGC	1 cut(s)	1670
AspS9I	GGNCC	3 cut(s)	506, 535, 587
AsuHPI	GGTGA	6 cut(s)	148, 283, 301, 1102, 1982, 2092
AsuNHI	GCTAGC	1 cut(s)	1490
AvaII	GGWCC	1 cut(s)	506
BanII	GRGCYC	3 cut(s)	757, 788, 1777
BauI	CACGAG	1 cut(s)	936
BbsI	GAAGAC	2 cut(s)	357, 1517
Bbv12I	GWGCWC	4 cut(s)	757, 788, 937, 2119
BbvCI	CCTCAGC	2 cut(s)	174, 1251
BbvI	GCAGC	3 cut(s)	393, 415, 1129
BceAI	ACGGC	2 cut(s)	598, 646
BcgI	CGANNNNNNTGC	4 cut(s)	770, 804, 917, 951
BclI	TGATCA	3 cut(s)	528, 1422, 1527
BcoDI	GTCTC	4 cut(s)	487, 809, 1020, 1168
BfaI	CTAG	6 cut(s)	876, 912, 1491, 1778, 1841, 2021
BfmI	CTRYAG	1 cut(s)	1143
BfuAI	ACCTGC	1 cut(s)	1271
BglI	GCCNNNNNGGC	2 cut(s)	463, 614
BisI	GCNGC	6 cut(s)	404, 407, 586, 1143, 1387, 1865
BlpI	GCTNAGC	1 cut(s)	699
BlsI	GCNGC	6 cut(s)	405, 408, 587, 1144, 1388, 1866
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	3 cut(s)	506, 535, 587
BmiI	GGNNCC	2 cut(s)	589, 822
BmrI	ACTGGG	2 cut(s)	1564, 1986
BmsI	GCATC	5 cut(s)	937, 1279, 1785, 1799, 1970
BmtI	GCTAGC	1 cut(s)	1494
BmuI	ACTGGG	2 cut(s)	1564, 1986
BpiI	GAAGAC	2 cut(s)	357, 1517
BplI	GAGNNNNNCTC	2 cut(s)	713, 745
BpmI	CTGGAG	1 cut(s)	1779
Bpu10I	CCTNAGC	2 cut(s)	174, 1251
Bpu1102I	GCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	452
BsaAI	YACGTR	1 cut(s)	1721
BsaBI	GATNNNNATC	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	487
BsaJI	CCNNGG	2 cut(s)	2103, 2129
BsaXI	ACNNNNNCTCC	4 cut(s)	148, 178, 467, 497
Bsc4I	CCNNNNNNNGG	3 cut(s)	430, 878, 2007
Bse1I	ACTGG	5 cut(s)	467, 836, 1157, 1559, 1981
Bse3DI	GCAATG	4 cut(s)	799, 1138, 1348, 2048
Bse8I	GATNNNNATC	1 cut(s)	527
BseDI	CCNNGG	2 cut(s)	2103, 2129
BseGI	GGATG	7 cut(s)	1072, 1327, 1421, 1600, 1806, 1814, 1900
BseJI	GATNNNNATC	1 cut(s)	527
BseLI	CCNNNNNNNGG	3 cut(s)	430, 878, 2007
BseMI	GCAATG	4 cut(s)	799, 1138, 1348, 2048
BseMII	CTCAG	4 cut(s)	188, 540, 690, 1242
BseNI	ACTGG	5 cut(s)	467, 836, 1157, 1559, 1981
BseRI	GAGGAG	8 cut(s)	97, 100, 112, 153, 162, 315, 318, 894
BseXI	GCAGC	3 cut(s)	393, 415, 1129
Bsh1236I	CGCG	2 cut(s)	712, 1668
BshFI	GGCC	4 cut(s)	537, 588, 1166, 2019
BsiHKAI	GWGCWC	4 cut(s)	757, 788, 937, 2119
BsiSI	CCGG	4 cut(s)	424, 496, 732, 824
BsiWI	CGTACG	1 cut(s)	1721
BslFI	GGGAC	2 cut(s)	227, 935
BslI	CCNNNNNNNGG	3 cut(s)	430, 878, 2007
BsmAI	GTCTC	4 cut(s)	487, 809, 1020, 1168
BsmBI	CGTCTC	1 cut(s)	809
BsmFI	GGGAC	2 cut(s)	227, 935
BsmI	GAATGC	2 cut(s)	1388, 1812
BsnI	GGCC	4 cut(s)	537, 588, 1166, 2019
Bso31I	GGTCTC	1 cut(s)	487
Bsp1286I	GDGCHC	5 cut(s)	757, 788, 937, 1777, 2119
Bsp1407I	TGTACA	1 cut(s)	2145
Bsp143I	GATC	5 cut(s)	528, 1147, 1243, 1422, 1527
Bsp1720I	GCTNAGC	1 cut(s)	699
BspANI	GGCC	4 cut(s)	537, 588, 1166, 2019
BspCNI	CTCAG	4 cut(s)	187, 541, 691, 1243
BspFNI	CGCG	2 cut(s)	712, 1668
BspHI	TCATGA	1 cut(s)	1947
BspLI	GGNNCC	2 cut(s)	589, 822
BspMAI	CTGCAG	1 cut(s)	1147
BspMI	ACCTGC	1 cut(s)	1271
BspOI	GCTAGC	1 cut(s)	1494
BspPI	GGATC	1 cut(s)	1251
BspQI	GCTCTTC	2 cut(s)	289, 1765
BspTNI	GGTCTC	1 cut(s)	487
BsrBI	CCGCTC	1 cut(s)	703
BsrDI	GCAATG	4 cut(s)	799, 1138, 1348, 2048
BsrGI	TGTACA	1 cut(s)	2145
BsrI	ACTGG	5 cut(s)	467, 836, 1157, 1559, 1981
BssECI	CCNNGG	2 cut(s)	2103, 2129
BssMI	GATC	5 cut(s)	528, 1147, 1243, 1422, 1527
BssNAI	GTATAC	1 cut(s)	991
BssSI	CACGAG	1 cut(s)	936
BssT1I	CCWWGG	2 cut(s)	2103, 2129
Bst1107I	GTATAC	1 cut(s)	991
Bst2BI	CACGAG	1 cut(s)	936
Bst4CI	ACNGT	7 cut(s)	661, 740, 1100, 1681, 1822, 2220, 2241
Bst6I	CTCTTC	2 cut(s)	289, 1765
BstAUI	TGTACA	1 cut(s)	2145
BstBAI	YACGTR	1 cut(s)	1721
BstC8I	GCNNGC	5 cut(s)	317, 562, 837, 1492, 2074
BstDEI	CTNAG	7 cut(s)	174, 549, 699, 762, 1251, 1455, 2155
BstENI	CCTNNNNNAGG	1 cut(s)	876
BstF5I	GGATG	7 cut(s)	1072, 1327, 1421, 1600, 1806, 1814, 1900
BstFNI	CGCG	2 cut(s)	712, 1668
BstHHI	GCGC	1 cut(s)	1670
BstKTI	GATC	5 cut(s)	531, 1150, 1246, 1425, 1530
BstMAI	GTCTC	4 cut(s)	487, 809, 1020, 1168
BstMBI	GATC	5 cut(s)	528, 1147, 1243, 1422, 1527
BstMWI	GCNNNNNNNGC	7 cut(s)	463, 543, 614, 709, 1142, 1674, 2073
BstNSI	RCATGY	3 cut(s)	928, 989, 2064
BstSFI	CTRYAG	1 cut(s)	1143
BstUI	CGCG	2 cut(s)	712, 1668
BstV1I	GCAGC	3 cut(s)	393, 415, 1129
BstV2I	GAAGAC	2 cut(s)	357, 1517
BstZ17I	GTATAC	1 cut(s)	991
BsuRI	GGCC	4 cut(s)	537, 588, 1166, 2019
BtsCI	GGATG	7 cut(s)	1072, 1327, 1421, 1600, 1806, 1814, 1900
BtsIMutI	CAGTG	4 cut(s)	18, 546, 1150, 2216
BveI	ACCTGC	1 cut(s)	1271
Cac8I	GCNNGC	5 cut(s)	317, 562, 837, 1492, 2074
CciI	TCATGA	1 cut(s)	1947
CfoI	GCGC	1 cut(s)	1670
Cfr13I	GGNCC	3 cut(s)	506, 535, 587
CpoI	CGGWCCG	1 cut(s)	506
CseI	GACGC	1 cut(s)	718
Csp6I	GTAC	6 cut(s)	379, 748, 1262, 1516, 1722, 2146
CspI	CGGWCCG	1 cut(s)	506
CviQI	GTAC	6 cut(s)	379, 748, 1262, 1516, 1722, 2146
DdeI	CTNAG	7 cut(s)	174, 549, 699, 762, 1251, 1455, 2155
DpnI	GATC	5 cut(s)	530, 1149, 1245, 1424, 1529
DpnII	GATC	5 cut(s)	528, 1147, 1243, 1422, 1527
DraI	TTTAAA	1 cut(s)	1188
Eam1104I	CTCTTC	2 cut(s)	289, 1765
EarI	CTCTTC	2 cut(s)	289, 1765
Ecl136II	GAGCTC	2 cut(s)	755, 786
Eco130I	CCWWGG	2 cut(s)	2103, 2129
Eco24I	GRGCYC	3 cut(s)	757, 788, 1777
Eco31I	GGTCTC	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	506
Eco53kI	GAGCTC	2 cut(s)	755, 786
Eco57I	CTGAAG	2 cut(s)	1397, 2075
EcoICRI	GAGCTC	2 cut(s)	755, 786
EcoNI	CCTNNNNNAGG	1 cut(s)	876
EcoT14I	CCWWGG	2 cut(s)	2103, 2129
EcoT22I	ATGCAT	4 cut(s)	930, 1567, 1814, 1963
EcoT38I	GRGCYC	3 cut(s)	757, 788, 1777
ErhI	CCWWGG	2 cut(s)	2103, 2129
Esp3I	CGTCTC	1 cut(s)	809
FaqI	GGGAC	2 cut(s)	227, 935
FauI	CCCGC	1 cut(s)	553
FauNDI	CATATG	1 cut(s)	2041
FbaI	TGATCA	3 cut(s)	528, 1422, 1527
FblI	GTMKAC	1 cut(s)	990
Fnu4HI	GCNGC	6 cut(s)	404, 407, 586, 1143, 1387, 1865
FokI	GGATG	7 cut(s)	1079, 1334, 1428, 1607, 1813, 1821, 1907
FriOI	GRGCYC	3 cut(s)	757, 788, 1777
Fsp4HI	GCNGC	6 cut(s)	404, 407, 586, 1143, 1387, 1865
FspBI	CTAG	6 cut(s)	876, 912, 1491, 1778, 1841, 2021
GlaI	GCGC	1 cut(s)	1669
GluI	GCNGC	6 cut(s)	404, 407, 586, 1143, 1387, 1865
GsuI	CTGGAG	1 cut(s)	1779
HaeIII	GGCC	4 cut(s)	537, 588, 1166, 2019
HapII	CCGG	4 cut(s)	424, 496, 732, 824
HgaI	GACGC	1 cut(s)	718
HhaI	GCGC	1 cut(s)	1670
Hin6I	GCGC	1 cut(s)	1668
HinP1I	GCGC	1 cut(s)	1668
HindIII	AAGCTT	1 cut(s)	1983
HinfI	GANTC	7 cut(s)	272, 523, 570, 728, 1003, 1536, 1663
HpaII	CCGG	4 cut(s)	424, 496, 732, 824
HphI	GGTGA	6 cut(s)	148, 283, 301, 1102, 1982, 2092
Hpy166II	GTNNAC	3 cut(s)	18, 991, 2146
Hpy188I	TCNGA	9 cut(s)	487, 506, 528, 569, 657, 849, 894, 1422, 2197
Hpy188III	TCNNGA	7 cut(s)	217, 469, 876, 938, 1540, 1948, 2185
Hpy8I	GTNNAC	3 cut(s)	18, 991, 2146
Hpy99I	CGWCG	5 cut(s)	144, 359, 362, 632, 740
HpyCH4III	ACNGT	7 cut(s)	661, 740, 1100, 1681, 1822, 2220, 2241
HpyCH4IV	ACGT	3 cut(s)	1514, 1720, 1724
HpyF10VI	GCNNNNNNNGC	7 cut(s)	463, 543, 614, 709, 1142, 1674, 2073
HpyF3I	CTNAG	7 cut(s)	174, 549, 699, 762, 1251, 1455, 2155
HpySE526I	ACGT	3 cut(s)	1514, 1720, 1724
HspAI	GCGC	1 cut(s)	1668
Ksp22I	TGATCA	3 cut(s)	528, 1422, 1527
Kzo9I	GATC	5 cut(s)	528, 1147, 1243, 1422, 1527
LguI	GCTCTTC	2 cut(s)	289, 1765
LmnI	GCTCC	2 cut(s)	820, 1297
Lsp1109I	GCAGC	3 cut(s)	393, 415, 1129
LweI	GCATC	5 cut(s)	937, 1279, 1785, 1799, 1970
MaeI	CTAG	6 cut(s)	876, 912, 1491, 1778, 1841, 2021
MaeII	ACGT	3 cut(s)	1514, 1720, 1724
MaeIII	GTNAC	4 cut(s)	1090, 1325, 1655, 2098
MalI	GATC	5 cut(s)	530, 1149, 1245, 1424, 1529
MbiI	CCGCTC	1 cut(s)	703
MboI	GATC	5 cut(s)	528, 1147, 1243, 1422, 1527
MfeI	CAATTG	1 cut(s)	1905
MhlI	GDGCHC	5 cut(s)	757, 788, 937, 1777, 2119
MluCI	AATT	7 cut(s)	94, 451, 500, 1905, 1914, 2003, 2124
MlyI	GAGTC	1 cut(s)	722
MmeI	TCCRAC	3 cut(s)	648, 1423, 1841
Mph1103I	ATGCAT	4 cut(s)	930, 1567, 1814, 1963
MroXI	GAANNNNTTC	2 cut(s)	1450, 1985
MseI	TTAA	8 cut(s)	663, 864, 1158, 1187, 1547, 2177, 2232, 2248
MslI	CAYNNNNRTG	4 cut(s)	1011, 1079, 1316, 2141
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	4 cut(s)	424, 496, 732, 824
MunI	CAATTG	1 cut(s)	1905
Mva1269I	GAATGC	2 cut(s)	1388, 1812
MvnI	CGCG	2 cut(s)	712, 1668
MwoI	GCNNNNNNNGC	7 cut(s)	463, 543, 614, 709, 1142, 1674, 2073
NdeI	CATATG	1 cut(s)	2041
NdeII	GATC	5 cut(s)	528, 1147, 1243, 1422, 1527
NheI	GCTAGC	1 cut(s)	1490
NlaIV	GGNNCC	2 cut(s)	589, 822
NmuCI	GTSAC	2 cut(s)	1090, 2098
NsiI	ATGCAT	4 cut(s)	930, 1567, 1814, 1963
NspI	RCATGY	3 cut(s)	928, 989, 2064
OliI	CACNNNNGTG	1 cut(s)	2141
PagI	TCATGA	1 cut(s)	1947
PciI	ACATGT	1 cut(s)	985
PciSI	GCTCTTC	2 cut(s)	289, 1765
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PctI	GAATGC	2 cut(s)	1388, 1812
PdmI	GAANNNNTTC	2 cut(s)	1450, 1985
PfeI	GAWTC	6 cut(s)	272, 523, 570, 1003, 1536, 1663
Pfl23II	CGTACG	1 cut(s)	1721
PflFI	GACNNNGTC	1 cut(s)	601
PkrI	GCNGC	6 cut(s)	405, 408, 587, 1144, 1388, 1866
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
Ppu21I	YACGTR	1 cut(s)	1721
PscI	ACATGT	1 cut(s)	985
PsiI	TTATAA	1 cut(s)	1634
Psp124BI	GAGCTC	2 cut(s)	757, 788
PspLI	CGTACG	1 cut(s)	1721
PspN4I	GGNNCC	2 cut(s)	589, 822
PspPI	GGNCC	3 cut(s)	506, 535, 587
PstI	CTGCAG	1 cut(s)	1147
PsyI	GACNNNGTC	1 cut(s)	601
PvuII	CAGCTG	1 cut(s)	406
RsaI	GTAC	6 cut(s)	380, 749, 1263, 1517, 1723, 2147
RsaNI	GTAC	6 cut(s)	379, 748, 1262, 1516, 1722, 2146
RseI	CAYNNNNRTG	4 cut(s)	1011, 1079, 1316, 2141
Rsr2I	CGGWCCG	1 cut(s)	506
RsrII	CGGWCCG	1 cut(s)	506
SacI	GAGCTC	2 cut(s)	757, 788
SapI	GCTCTTC	2 cut(s)	289, 1765
SaqAI	TTAA	8 cut(s)	663, 864, 1158, 1187, 1547, 2177, 2232, 2248
SatI	GCNGC	6 cut(s)	404, 407, 586, 1143, 1387, 1865
Sau3AI	GATC	5 cut(s)	528, 1147, 1243, 1422, 1527
Sau96I	GGNCC	3 cut(s)	506, 535, 587
SchI	GAGTC	1 cut(s)	722
SduI	GDGCHC	5 cut(s)	757, 788, 937, 1777, 2119
SfaNI	GCATC	5 cut(s)	937, 1279, 1785, 1799, 1970
SfcI	CTRYAG	1 cut(s)	1143
SinI	GGWCC	1 cut(s)	506
SmiMI	CAYNNNNRTG	4 cut(s)	1011, 1079, 1316, 2141
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	7 cut(s)	94, 451, 500, 1905, 1914, 2003, 2124
SspI	AATATT	2 cut(s)	1210, 1890
SspMI	CTAG	6 cut(s)	876, 912, 1491, 1778, 1841, 2021
SstI	GAGCTC	2 cut(s)	757, 788
StyI	CCWWGG	2 cut(s)	2103, 2129
TaaI	ACNGT	7 cut(s)	661, 740, 1100, 1681, 1822, 2220, 2241
TaiI	ACGT	3 cut(s)	1517, 1723, 1727
TaqI	TCGA	5 cut(s)	417, 627, 1246, 1299, 1989
TaqII	GACCGA	2 cut(s)	523, 747
TasI	AATT	7 cut(s)	94, 451, 500, 1905, 1914, 2003, 2124
TatI	WGTACW	2 cut(s)	378, 2145
TauI	GCSGC	3 cut(s)	588, 1389, 1867
TfiI	GAWTC	6 cut(s)	272, 523, 570, 1003, 1536, 1663
Tru1I	TTAA	8 cut(s)	663, 864, 1158, 1187, 1547, 2177, 2232, 2248
Tru9I	TTAA	8 cut(s)	663, 864, 1158, 1187, 1547, 2177, 2232, 2248
TscAI	CASTG	4 cut(s)	18, 553, 1157, 2223
TseFI	GTSAC	2 cut(s)	1090, 2098
TseI	GCWGC	3 cut(s)	403, 406, 1142
Tsp45I	GTSAC	2 cut(s)	1090, 2098
TspDTI	ATGAA	9 cut(s)	399, 626, 1076, 1359, 1523, 1604, 1676, 1941, 1964
TspGWI	ACGGA	1 cut(s)	833
TspRI	CASTG	4 cut(s)	18, 553, 1157, 2223
Tth111I	GACNNNGTC	1 cut(s)	601
VpaK11BI	GGWCC	1 cut(s)	506
XagI	CCTNNNNNAGG	1 cut(s)	876
XapI	RAATTY	3 cut(s)	94, 451, 2124
XbaI	TCTAGA	1 cut(s)	875
XceI	RCATGY	3 cut(s)	928, 989, 2064
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616
XmiI	GTMKAC	1 cut(s)	990
XmnI	GAANNNNTTC	2 cut(s)	1450, 1985
XspI	CTAG	6 cut(s)	876, 912, 1491, 1778, 1841, 2021
Zsp2I	ATGCAT	4 cut(s)	930, 1567, 1814, 1963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.