Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0011908

Physical Location & Seq

Genomic Coordinates Reverse (-)

31581707 .. 31590497

Gene Structure 8791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG151200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2820 bp

ATGGAGTTTTCAGTGTCCACCCCACGCTATTACTATCCCAATCCCAAACCCACTACTACCACCACCACCTTTTCTCTCAAACCCCCAAATTCCCAAGCCTCCTCCTCCCCTCTCTCCTCATCTAACCAACTTCGTCGCCCCAAAACCATCACCACTCCTCCTCCTCCTCCTCAGCCCACCAAACCCATCTCCAAAATCCCCTCTAACCCCTTCAAGAACCTCACTAATCCCACCCATGTCCCCACTCCACCGATTATTACCACCACCGATTCTAACACCTCTTCTCTCACCAACAAGCTCTGGCTCACCAGCAAGCTCTCTCCTCCTCCACCGCCACCAGACATAGAAGACGACGACGAAGAAGAAGCAGTCAAGTACAATGAACCCATAAAGAAATCGCAGCTGCCCAAAGTCGAGTTCCGGCAAGAGGGTAAGATTTTCGTGGGGAATTTACCCAACTGGCTCAATAAAAACGAGGTCTCCGAGTTTTTCCGGCAATTCGGACCGATAACGAATGTGATTCTGATCAAGGGCTATGACAGCACTGAGAGAAATGCGGGCTTCGGATTCGTTATATACGGCGGCCCCAATGCGACCAAGTCTGCCATGAAGGCGGTGGAGTTTGACGGCGTGGAGTTCCACGGGAGGGTTCTGACTGTTAAGTTGGACGATGGGGGCAGATTGAAGGACAAAGCTGAGCAGAGGACGCGGTGGATTGAGCAAGACTCCGGCGACGGTGTTGAGTACCGAGCTCGGTCTAAGTGGCACAAGGAGAGGCAGAGCTCTCGCAATGCCTTGCGCAAGGTTATGGAGACGGAGCCGGAGAACTGGCAGGCTGTGGTTCAGACTTTTGAGAGGATTAACAAGCCTTCTAGAGGAGAGTATGGTCTGATGGTCAAGTATTATGCTAGGCGAGGGGACATGCATCGTGCTCGTGAAACATTTGAGAGCATGAGAGCAAGAGGAATAGAGCCGACTTCACATGTATACACAAGCCTGATTCACGCTTATGCAGTTGGCAGAGACATGGAAGAAGCATTATCTTGTGTTAGAAAAATGAAGGATGAGGGCATTGAAATGAGTTTGGTGACTTACAGTATTATTGTTGGGGGATTTGCAAAAGTTGGCAATGCCGAAGCTGCAGATCACTGGTTTAAGGAGGCCAAAGAGAGACATACAACTTTAAATGCAATCATTTATGGGAATATTGTTTATGCTCATTGTCAATCATGTAATATGGATCGAGCTGAGGCATTGGTACGAGAAATGGAAGAAGCAGGTATAGATGCTCCTATCGACATATATCACACCATGATGGATGGTTACACAATGGTTGGCAATGAAGATAAATGTTTGATTGTGTTTGAGCGACTGAAGGAATGCGGCTTTACACCTTCTGTCATCAGTTATGGATGTCTGATCAATCTTTACATCAAGGTTGGAAAAGTTTCTAAGGCATTGGAAGTCAGCAAAATGATGGAAACAGCTAGCATAAAACATAACATGAAGACGTACTCCATGTTGATCAATGGATTCTTGAAGTTAAAAGACTGGGCTAATGCATTTGCAGTTATAGAAGATTTGATGAAGGATGGTTTGAAGCCCGATGTAGTCCTGTATAATAACATTATAACAGCATTTTGTGGAATGGGTAACATGAATCGCGCTGTTCGCACCGTCAAAGAAATGCAGAGGGAGAGGCATAGACCTACATCACGTACGTTTATGCCGATAATACATGGTTTTGCAAGAGCTGGAGATATGAGAAGAGCCCTAGAGATTTTTGACATGATGCGGATGAGTGGATGCATTCCAACTGTCCATACTTTCAATGCTCTAGTTCTTGGTCTTGTGGAGAAGCGGCAGATGGAGAAGGCTGTTGAAATATTGGATGAGATGACACTTGCAGGAATTAGTCCAAATGAACACACATACACAACTATCATGAATGGTTATGCATCTTTAGGTGATACTGGGAAAGCTTTCGAGTATTTTTCCAAATTGAGGAATGATGGCCTAGAGATTGATGTTTTCACATATGAGGCATTGCTGAAGGCATGTTGCAAAGCAGGCAAAATGCAGAGTGCTTTAGCTGTCACCAAGGAAATGAGTGCTCAAAAAATTCCAAGGAACACCTTTGTGTACAACATATTAGTTGATGGATGGGCTCGAAGAGGTGATGTTTGGGAGGCTGCTGACTTGATGCAGCAAATGAAACGGGAAGGGGTTCAACCTGATATCCACTCCTACACGTCTTTCATAAATGCTTGTTGCAAGGCCGGAGACATGCAGAGAGCTGCAAAAACAATTGAAGAGATGAAAACTTTTGGAGTGAAGCCAAATGTTAAAACTTATACCACATTGATACATGGTTGGGCGCGTGCTTCTCTACCGGAGAAGGCTTTGAGATGCTTCAAAGATATGAAGTTGGCTGGATTGAAGCCAGACAAAGCTGTGTACCATTGCTTGATGACGTCACTGTTGTCAAGGGCTACTGTTGCTGAAGCTTACATTTATTCTGGTCTTCTGTCTATCTGCAAGGAGATGATAGAATCTGGATTGACTGTGGATATGGGAACTGCAGTTCACTGGTCGAGGTGCTTACGCAAAATTGAAAGAACAGGTGGTGAGCTTACTGAAGCCCTGCAGAAGACCTTCCCTCCTGATTGGAACTCTTGTCATACTTTGTACGTGAGTTCGGACGTAGACAGTGATGATGAAGTTGACATTACTAGTGATGGTGATGATGATGACATGGAGTTTGCTAGTAGAATAGATAATGTTATGATGACTGATGAGGATAGTCTAAAGCACGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 RRM_1

Protein Analysis

939

Amino Acids

105.8

Weight (kDa)

7.06

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	146 - 218	9e-12	RNA recognition motif
PPR_2	PF13041	297 - 338	2.6e-08	PPR repeat family
TPR_24	PF23276	303 - 416	1e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	308 - 381	3.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	321 - 372	6.9e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	329 - 374	1.3e-09	PPR repeat family
PPR	PF01535	329 - 358	6e-06	PPR repeat
PPR_3	PF13812	419 - 477	2.6e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	454 - 562	4.6e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	465 - 514	4.2e-10	PPR repeat family
PPR_3	PF13812	524 - 579	1.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	531 - 564	9e-08	PPR repeat
PPR_2	PF13041	535 - 584	5.7e-11	PPR repeat family
TPR_24	PF23276	567 - 667	2e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	574 - 617	1.8e-08	PPR repeat family
PPR_3	PF13812	574 - 614	5.4e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	589 - 695	1.3e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	605 - 653	8.3e-14	PPR repeat family
PPR_2	PF13041	644 - 689	1.1e-10	PPR repeat family
PPR_3	PF13812	666 - 719	7.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	671 - 704	9.9e-07	PPR repeat
PPR_2	PF13041	676 - 723	1e-09	PPR repeat family
PPR_long	PF17177	687 - 825	1.1e-13	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	711 - 759	2.1e-14	PPR repeat family
TPR_24	PF23276	723 - 830	3e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	734 - 785	2.4e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	742 - 774	1.6e-07	PPR repeat
PPR_2	PF13041	745 - 793	4.1e-15	PPR repeat family
PPR	PF01535	749 - 778	2.8e-06	PPR repeat
PPR_3	PF13812	772 - 824	1.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	777 - 809	2.1e-06	PPR repeat
PPR_2	PF13041	784 - 827	4.2e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04810 AT5G04810
fragaria_vesca	FvH4_7g06690
malus_domestica	MD07G1061700.v1.1
prunus_persica	Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1
pyrus_communis	pycom07g04720
rosa_chinensis	RchiOBHm_Chr1g0336351
rosa_laevigata	RLG00000029372
rosa_multiflora	Rmu_sc0005261.1_g000013 Rmu_sc0005480.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315730
rosa_rugosa	Rorug01G0125300
rosa_samantha	Rh1AG144500 Rh1BG114100 Rh1CG136000 Rh1DG151200
rosa_wichuraiana	Rw1G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1631
AatII	GACGTC	1 cut(s)	2477
Acc16I	TGCGCA	1 cut(s)	800
Acc36I	ACCTGC	1 cut(s)	1268
AccI	GTMKAC	2 cut(s)	987, 2706
AccII	CGCG	3 cut(s)	709, 1665, 2380
AciI	CCGC	8 cut(s)	332, 557, 582, 614, 709, 1383, 1795, 1861
AclWI	GGATC	1 cut(s)	1248
AcsI	RAATTY	3 cut(s)	88, 448, 2121
AcuI	CTGAAG	4 cut(s)	1394, 2072, 2523, 2658
AcyI	GRCGYC	1 cut(s)	2474
AfaI	GTAC	8 cut(s)	377, 746, 1260, 1514, 1720, 2144, 2459, 2690
AfiI	CCNNNNNNNGG	4 cut(s)	427, 646, 875, 2004
AflIII	ACRYGT	2 cut(s)	982, 2250
AhlI	ACTAGT	1 cut(s)	2732
AjiI	CACGTC	1 cut(s)	2253
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AleI	CACNNNNGTG	1 cut(s)	2138
AloI	GAACNNNNNNTCC	2 cut(s)	2568, 2600
Alw21I	GWGCWC	4 cut(s)	754, 785, 934, 2116
Alw26I	GTCTC	5 cut(s)	484, 806, 1017, 1165, 2277
AlwI	GGATC	1 cut(s)	1248
AoxI	GGCC	4 cut(s)	583, 1161, 2014, 2277
ApeKI	GCWGC	6 cut(s)	400, 403, 1139, 2192, 2206, 2297
ApoI	RAATTY	3 cut(s)	88, 448, 2121
ArsI	GACNNNNNNTTYG	2 cut(s)	2744, 2776
Asp700I	GAANNNNTTC	4 cut(s)	1447, 1982, 2226, 2654
AspLEI	GCGC	3 cut(s)	801, 1667, 2380
AspS9I	GGNCC	2 cut(s)	503, 584
AsuHPI	GGTGA	9 cut(s)	142, 280, 298, 1099, 1979, 2089, 2189, 2639, 2753
AsuNHI	GCTAGC	1 cut(s)	1487
AvaII	GGWCC	1 cut(s)	503
BanII	GRGCYC	4 cut(s)	754, 785, 1774, 2170
BauI	CACGAG	1 cut(s)	933
BbsI	GAAGAC	4 cut(s)	354, 1514, 2516, 2657
Bbv12I	GWGCWC	4 cut(s)	754, 785, 934, 2116
BbvCI	CCTCAGC	2 cut(s)	171, 1248
BbvI	GCAGC	6 cut(s)	390, 412, 1126, 2179, 2218, 2284
BceAI	ACGGC	2 cut(s)	595, 643
BcgI	CGANNNNNNTGC	4 cut(s)	767, 801, 914, 948
BclI	TGATCA	3 cut(s)	525, 1419, 1524
BcoDI	GTCTC	5 cut(s)	484, 806, 1017, 1165, 2277
BcuI	ACTAGT	1 cut(s)	2732
BfaI	CTAG	8 cut(s)	873, 909, 1488, 1775, 1838, 2018, 2733, 2766
BfmI	CTRYAG	3 cut(s)	1140, 2580, 2645
BfuAI	ACCTGC	1 cut(s)	1268
BglI	GCCNNNNNGGC	1 cut(s)	611
BisI	GCNGC	9 cut(s)	401, 404, 583, 1140, 1384, 1862, 2193, 2207, 2298
BlpI	GCTNAGC	1 cut(s)	696
BlsI	GCNGC	9 cut(s)	402, 405, 584, 1141, 1385, 1863, 2194, 2208, 2299
Bme18I	GGWCC	1 cut(s)	503
BmgBI	CACGTC	1 cut(s)	2253
BmgT120I	GGNCC	2 cut(s)	503, 584
BmiI	GGNNCC	2 cut(s)	586, 819
BmrI	ACTGGG	2 cut(s)	1561, 1983
BmsI	GCATC	7 cut(s)	934, 1276, 1782, 1796, 1967, 2193, 2399
BmtI	GCTAGC	1 cut(s)	1491
BmuI	ACTGGG	2 cut(s)	1561, 1983
BpiI	GAAGAC	4 cut(s)	354, 1514, 2516, 2657
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
BpmI	CTGGAG	1 cut(s)	1776
Bpu10I	CCTNAGC	2 cut(s)	171, 1248
Bpu1102I	GCTNAGC	1 cut(s)	696
BsaAI	YACGTR	2 cut(s)	1718, 2692
BsaBI	GATNNNNATC	1 cut(s)	524
BsaHI	GRCGYC	1 cut(s)	2474
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	3 cut(s)	640, 2100, 2126
BsaWI	WCCGGW	1 cut(s)	2392
BsaXI	ACNNNNNCTCC	8 cut(s)	142, 145, 172, 175, 464, 494, 2644, 2674
Bsc4I	CCNNNNNNNGG	4 cut(s)	427, 646, 875, 2004
Bse1I	ACTGG	6 cut(s)	464, 833, 1154, 1556, 1978, 2594
Bse3DI	GCAATG	5 cut(s)	796, 1135, 1345, 2045, 2461
Bse8I	GATNNNNATC	1 cut(s)	524
BseDI	CCNNGG	3 cut(s)	640, 2100, 2126
BseGI	GGATG	8 cut(s)	1069, 1324, 1418, 1597, 1803, 1811, 1897, 2168
BseJI	GATNNNNATC	1 cut(s)	524
BseLI	CCNNNNNNNGG	4 cut(s)	427, 646, 875, 2004
BseMI	GCAATG	5 cut(s)	796, 1135, 1345, 2045, 2461
BseMII	CTCAG	4 cut(s)	185, 537, 687, 1239
BseNI	ACTGG	6 cut(s)	464, 833, 1154, 1556, 1978, 2594
BseXI	GCAGC	6 cut(s)	390, 412, 1126, 2179, 2218, 2284
Bsh1236I	CGCG	3 cut(s)	709, 1665, 2380
BshFI	GGCC	4 cut(s)	585, 1163, 2016, 2279
BsiHKAI	GWGCWC	4 cut(s)	754, 785, 934, 2116
BsiSI	CCGG	6 cut(s)	421, 493, 729, 821, 2280, 2393
BsiWI	CGTACG	1 cut(s)	1718
BslFI	GGGAC	2 cut(s)	224, 932
BslI	CCNNNNNNNGG	4 cut(s)	427, 646, 875, 2004
BsmAI	GTCTC	5 cut(s)	484, 806, 1017, 1165, 2277
BsmBI	CGTCTC	1 cut(s)	806
BsmFI	GGGAC	2 cut(s)	224, 932
BsmI	GAATGC	2 cut(s)	1385, 1809
BsnI	GGCC	4 cut(s)	585, 1163, 2016, 2279
Bso31I	GGTCTC	1 cut(s)	484
Bsp1286I	GDGCHC	6 cut(s)	754, 785, 934, 1774, 2116, 2170
Bsp1407I	TGTACA	1 cut(s)	2142
Bsp143I	GATC	5 cut(s)	525, 1144, 1240, 1419, 1524
Bsp1720I	GCTNAGC	1 cut(s)	696
BspACI	CCGC	8 cut(s)	332, 557, 582, 614, 709, 1383, 1795, 1861
BspANI	GGCC	4 cut(s)	585, 1163, 2016, 2279
BspCNI	CTCAG	4 cut(s)	184, 538, 688, 1240
BspFNI	CGCG	3 cut(s)	709, 1665, 2380
BspHI	TCATGA	1 cut(s)	1944
BspLI	GGNNCC	2 cut(s)	586, 819
BspMAI	CTGCAG	3 cut(s)	1144, 2584, 2649
BspMI	ACCTGC	1 cut(s)	1268
BspOI	GCTAGC	1 cut(s)	1491
BspPI	GGATC	1 cut(s)	1248
BspQI	GCTCTTC	1 cut(s)	1762
BspTNI	GGTCTC	1 cut(s)	484
BsrDI	GCAATG	5 cut(s)	796, 1135, 1345, 2045, 2461
BsrGI	TGTACA	1 cut(s)	2142
BsrI	ACTGG	6 cut(s)	464, 833, 1154, 1556, 1978, 2594
BssECI	CCNNGG	3 cut(s)	640, 2100, 2126
BssMI	GATC	5 cut(s)	525, 1144, 1240, 1419, 1524
BssNAI	GTATAC	1 cut(s)	988
BssNI	GRCGYC	1 cut(s)	2474
BssSI	CACGAG	1 cut(s)	933
BssT1I	CCWWGG	2 cut(s)	2100, 2126
Bst1107I	GTATAC	1 cut(s)	988
Bst2BI	CACGAG	1 cut(s)	933
Bst4CI	ACNGT	9 cut(s)	658, 737, 1097, 1678, 1819, 2481, 2497, 2566, 2711
Bst6I	CTCTTC	4 cut(s)	286, 1762, 2167, 2307
BstACI	GRCGYC	1 cut(s)	2474
BstAUI	TGTACA	1 cut(s)	2142
BstBAI	YACGTR	2 cut(s)	1718, 2692
BstC8I	GCNNGC	6 cut(s)	314, 559, 834, 1489, 2071, 2382
BstDEI	CTNAG	6 cut(s)	171, 546, 696, 759, 1248, 1452
BstDSI	CCRYGG	1 cut(s)	640
BstENI	CCTNNNNNAGG	1 cut(s)	873
BstF5I	GGATG	8 cut(s)	1069, 1324, 1418, 1597, 1803, 1811, 1897, 2168
BstFNI	CGCG	3 cut(s)	709, 1665, 2380
BstHHI	GCGC	3 cut(s)	801, 1667, 2380
BstKTI	GATC	5 cut(s)	528, 1147, 1243, 1422, 1527
BstMAI	GTCTC	5 cut(s)	484, 806, 1017, 1165, 2277
BstMBI	GATC	5 cut(s)	525, 1144, 1240, 1419, 1524
BstMWI	GCNNNNNNNGC	7 cut(s)	540, 611, 706, 1139, 1671, 2070, 2498
BstNSI	RCATGY	4 cut(s)	925, 986, 2061, 2290
BstSFI	CTRYAG	3 cut(s)	1140, 2580, 2645
BstUI	CGCG	3 cut(s)	709, 1665, 2380
BstV1I	GCAGC	6 cut(s)	390, 412, 1126, 2179, 2218, 2284
BstV2I	GAAGAC	4 cut(s)	354, 1514, 2516, 2657
BstZ17I	GTATAC	1 cut(s)	988
BsuRI	GGCC	4 cut(s)	585, 1163, 2016, 2279
BtgI	CCRYGG	1 cut(s)	640
BtrI	CACGTC	1 cut(s)	2253
BtsCI	GGATG	8 cut(s)	1069, 1324, 1418, 1597, 1803, 1811, 1897, 2168
BtsIMutI	CAGTG	6 cut(s)	18, 543, 1147, 2477, 2587, 2716
BveI	ACCTGC	1 cut(s)	1268
Cac8I	GCNNGC	6 cut(s)	314, 559, 834, 1489, 2071, 2382
CciI	TCATGA	1 cut(s)	1944
CfoI	GCGC	3 cut(s)	801, 1667, 2380
Cfr13I	GGNCC	2 cut(s)	503, 584
CpoI	CGGWCCG	1 cut(s)	503
CseI	GACGC	1 cut(s)	715
Csp6I	GTAC	8 cut(s)	376, 745, 1259, 1513, 1719, 2143, 2458, 2689
CspI	CGGWCCG	1 cut(s)	503
CviQI	GTAC	8 cut(s)	376, 745, 1259, 1513, 1719, 2143, 2458, 2689
DdeI	CTNAG	6 cut(s)	171, 546, 696, 759, 1248, 1452
DpnI	GATC	5 cut(s)	527, 1146, 1242, 1421, 1526
DpnII	GATC	5 cut(s)	525, 1144, 1240, 1419, 1524
DraI	TTTAAA	1 cut(s)	1185
Eam1104I	CTCTTC	4 cut(s)	286, 1762, 2167, 2307
EarI	CTCTTC	4 cut(s)	286, 1762, 2167, 2307
Ecl136II	GAGCTC	2 cut(s)	752, 783
Eco130I	CCWWGG	2 cut(s)	2100, 2126
Eco24I	GRGCYC	4 cut(s)	754, 785, 1774, 2170
Eco31I	GGTCTC	1 cut(s)	484
Eco32I	GATATC	1 cut(s)	2239
Eco47I	GGWCC	1 cut(s)	503
Eco53kI	GAGCTC	2 cut(s)	752, 783
Eco57I	CTGAAG	4 cut(s)	1394, 2072, 2523, 2658
EcoICRI	GAGCTC	2 cut(s)	752, 783
EcoNI	CCTNNNNNAGG	1 cut(s)	873
EcoRV	GATATC	1 cut(s)	2239
EcoT14I	CCWWGG	2 cut(s)	2100, 2126
EcoT22I	ATGCAT	4 cut(s)	927, 1564, 1811, 1960
EcoT38I	GRGCYC	4 cut(s)	754, 785, 1774, 2170
ErhI	CCWWGG	2 cut(s)	2100, 2126
Esp3I	CGTCTC	1 cut(s)	806
FaqI	GGGAC	2 cut(s)	224, 932
FauI	CCCGC	1 cut(s)	550
FauNDI	CATATG	1 cut(s)	2038
FbaI	TGATCA	3 cut(s)	525, 1419, 1524
FblI	GTMKAC	2 cut(s)	987, 2706
Fnu4HI	GCNGC	9 cut(s)	401, 404, 583, 1140, 1384, 1862, 2193, 2207, 2298
FokI	GGATG	8 cut(s)	1076, 1331, 1425, 1604, 1810, 1818, 1904, 2175
FriOI	GRGCYC	4 cut(s)	754, 785, 1774, 2170
Fsp4HI	GCNGC	9 cut(s)	401, 404, 583, 1140, 1384, 1862, 2193, 2207, 2298
FspBI	CTAG	8 cut(s)	873, 909, 1488, 1775, 1838, 2018, 2733, 2766
FspI	TGCGCA	1 cut(s)	800
GlaI	GCGC	3 cut(s)	800, 1666, 2379
GluI	GCNGC	9 cut(s)	401, 404, 583, 1140, 1384, 1862, 2193, 2207, 2298
GsuI	CTGGAG	1 cut(s)	1776
HaeIII	GGCC	4 cut(s)	585, 1163, 2016, 2279
HapII	CCGG	6 cut(s)	421, 493, 729, 821, 2280, 2393
HgaI	GACGC	1 cut(s)	715
HhaI	GCGC	3 cut(s)	801, 1667, 2380
Hin1I	GRCGYC	1 cut(s)	2474
Hin6I	GCGC	3 cut(s)	799, 1665, 2378
HinP1I	GCGC	3 cut(s)	799, 1665, 2378
HincII	GTYRAC	1 cut(s)	2725
HindII	GTYRAC	1 cut(s)	2725
HindIII	AAGCTT	2 cut(s)	1980, 2505
HinfI	GANTC	8 cut(s)	269, 520, 567, 725, 1000, 1533, 1660, 2552
HpaII	CCGG	6 cut(s)	421, 493, 729, 821, 2280, 2393
HphI	GGTGA	9 cut(s)	142, 280, 298, 1099, 1979, 2089, 2189, 2639, 2753
Hpy166II	GTNNAC	7 cut(s)	18, 988, 2143, 2458, 2587, 2707, 2725
Hpy188I	TCNGA	9 cut(s)	484, 503, 525, 566, 654, 846, 891, 1419, 2701
Hpy188III	TCNNGA	7 cut(s)	214, 873, 935, 1537, 1945, 2556, 2663
Hpy8I	GTNNAC	7 cut(s)	18, 988, 2143, 2458, 2587, 2707, 2725
Hpy99I	CGWCG	4 cut(s)	138, 356, 359, 737
HpyCH4III	ACNGT	9 cut(s)	658, 737, 1097, 1678, 1819, 2481, 2497, 2566, 2711
HpyCH4IV	ACGT	7 cut(s)	1511, 1717, 1721, 2252, 2474, 2691, 2703
HpyF10VI	GCNNNNNNNGC	7 cut(s)	540, 611, 706, 1139, 1671, 2070, 2498
HpyF3I	CTNAG	6 cut(s)	171, 546, 696, 759, 1248, 1452
HpySE526I	ACGT	7 cut(s)	1511, 1717, 1721, 2252, 2474, 2691, 2703
Hsp92I	GRCGYC	1 cut(s)	2474
HspAI	GCGC	3 cut(s)	799, 1665, 2378
Ksp22I	TGATCA	3 cut(s)	525, 1419, 1524
Kzo9I	GATC	5 cut(s)	525, 1144, 1240, 1419, 1524
LguI	GCTCTTC	1 cut(s)	1762
LmnI	GCTCC	2 cut(s)	817, 1294
Lsp1109I	GCAGC	6 cut(s)	390, 412, 1126, 2179, 2218, 2284
LweI	GCATC	7 cut(s)	934, 1276, 1782, 1796, 1967, 2193, 2399
MaeI	CTAG	8 cut(s)	873, 909, 1488, 1775, 1838, 2018, 2733, 2766
MaeII	ACGT	7 cut(s)	1511, 1717, 1721, 2252, 2474, 2691, 2703
MaeIII	GTNAC	5 cut(s)	1087, 1322, 1652, 2095, 2475
MalI	GATC	5 cut(s)	527, 1146, 1242, 1421, 1526
MboI	GATC	5 cut(s)	525, 1144, 1240, 1419, 1524
MfeI	CAATTG	1 cut(s)	2307
MhlI	GDGCHC	6 cut(s)	754, 785, 934, 1774, 2116, 2170
MluCI	AATT	8 cut(s)	88, 448, 497, 1911, 2000, 2121, 2307, 2610
MlyI	GAGTC	1 cut(s)	719
MmeI	TCCRAC	3 cut(s)	645, 1420, 1838
Mph1103I	ATGCAT	4 cut(s)	927, 1564, 1811, 1960
MroXI	GAANNNNTTC	4 cut(s)	1447, 1982, 2226, 2654
MseI	TTAA	6 cut(s)	660, 861, 1155, 1184, 1544, 2346
MslI	CAYNNNNRTG	4 cut(s)	1008, 1076, 1313, 2138
MspA1I	CMGCKG	1 cut(s)	403
MspI	CCGG	6 cut(s)	421, 493, 729, 821, 2280, 2393
MunI	CAATTG	1 cut(s)	2307
Mva1269I	GAATGC	2 cut(s)	1385, 1809
MvnI	CGCG	3 cut(s)	709, 1665, 2380
MwoI	GCNNNNNNNGC	7 cut(s)	540, 611, 706, 1139, 1671, 2070, 2498
NdeI	CATATG	1 cut(s)	2038
NdeII	GATC	5 cut(s)	525, 1144, 1240, 1419, 1524
NheI	GCTAGC	1 cut(s)	1487
NlaIV	GGNNCC	2 cut(s)	586, 819
NmuCI	GTSAC	3 cut(s)	1087, 2095, 2475
NsbI	TGCGCA	1 cut(s)	800
NsiI	ATGCAT	4 cut(s)	927, 1564, 1811, 1960
NspI	RCATGY	4 cut(s)	925, 986, 2061, 2290
OliI	CACNNNNGTG	1 cut(s)	2138
PagI	TCATGA	1 cut(s)	1944
PciI	ACATGT	1 cut(s)	982
PciSI	GCTCTTC	1 cut(s)	1762
PcsI	WCGNNNNNNNCGW	2 cut(s)	480, 1727
PctI	GAATGC	2 cut(s)	1385, 1809
PdmI	GAANNNNTTC	4 cut(s)	1447, 1982, 2226, 2654
PfeI	GAWTC	7 cut(s)	269, 520, 567, 1000, 1533, 1660, 2552
Pfl23II	CGTACG	1 cut(s)	1718
PflFI	GACNNNGTC	1 cut(s)	598
PkrI	GCNGC	9 cut(s)	402, 405, 584, 1141, 1385, 1863, 2194, 2208, 2299
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
Ppu21I	YACGTR	2 cut(s)	1718, 2692
PscI	ACATGT	1 cut(s)	982
PsiI	TTATAA	1 cut(s)	1631
Psp124BI	GAGCTC	2 cut(s)	754, 785
PspLI	CGTACG	1 cut(s)	1718
PspN4I	GGNNCC	2 cut(s)	586, 819
PspPI	GGNCC	2 cut(s)	503, 584
PstI	CTGCAG	3 cut(s)	1144, 2584, 2649
PsyI	GACNNNGTC	1 cut(s)	598
PvuII	CAGCTG	1 cut(s)	403
RsaI	GTAC	8 cut(s)	377, 746, 1260, 1514, 1720, 2144, 2459, 2690
RsaNI	GTAC	8 cut(s)	376, 745, 1259, 1513, 1719, 2143, 2458, 2689
RseI	CAYNNNNRTG	4 cut(s)	1008, 1076, 1313, 2138
Rsr2I	CGGWCCG	1 cut(s)	503
RsrII	CGGWCCG	1 cut(s)	503
SacI	GAGCTC	2 cut(s)	754, 785
SapI	GCTCTTC	1 cut(s)	1762
SaqAI	TTAA	6 cut(s)	660, 861, 1155, 1184, 1544, 2346
SatI	GCNGC	9 cut(s)	401, 404, 583, 1140, 1384, 1862, 2193, 2207, 2298
Sau3AI	GATC	5 cut(s)	525, 1144, 1240, 1419, 1524
Sau96I	GGNCC	2 cut(s)	503, 584
SchI	GAGTC	1 cut(s)	719
SduI	GDGCHC	6 cut(s)	754, 785, 934, 1774, 2116, 2170
SfaNI	GCATC	7 cut(s)	934, 1276, 1782, 1796, 1967, 2193, 2399
SfcI	CTRYAG	3 cut(s)	1140, 2580, 2645
SinI	GGWCC	1 cut(s)	503
SmiMI	CAYNNNNRTG	4 cut(s)	1008, 1076, 1313, 2138
SpeI	ACTAGT	1 cut(s)	2732
Sse9I	AATT	8 cut(s)	88, 448, 497, 1911, 2000, 2121, 2307, 2610
SsiI	CCGC	8 cut(s)	332, 557, 582, 614, 709, 1383, 1795, 1861
SspI	AATATT	2 cut(s)	1207, 1887
SspMI	CTAG	8 cut(s)	873, 909, 1488, 1775, 1838, 2018, 2733, 2766
SstI	GAGCTC	2 cut(s)	754, 785
StyI	CCWWGG	2 cut(s)	2100, 2126
TaaI	ACNGT	9 cut(s)	658, 737, 1097, 1678, 1819, 2481, 2497, 2566, 2711
TaiI	ACGT	7 cut(s)	1514, 1720, 1724, 2255, 2477, 2694, 2706
TaqI	TCGA	6 cut(s)	414, 1243, 1296, 1986, 2170, 2594
TaqII	GACCGA	2 cut(s)	520, 744
TasI	AATT	8 cut(s)	88, 448, 497, 1911, 2000, 2121, 2307, 2610
TatI	WGTACW	2 cut(s)	375, 2142
TauI	GCSGC	3 cut(s)	585, 1386, 1864
TfiI	GAWTC	7 cut(s)	269, 520, 567, 1000, 1533, 1660, 2552
Tru1I	TTAA	6 cut(s)	660, 861, 1155, 1184, 1544, 2346
Tru9I	TTAA	6 cut(s)	660, 861, 1155, 1184, 1544, 2346
TscAI	CASTG	6 cut(s)	18, 550, 1154, 2484, 2594, 2716
TseFI	GTSAC	3 cut(s)	1087, 2095, 2475
TseI	GCWGC	6 cut(s)	400, 403, 1139, 2192, 2206, 2297
Tsp45I	GTSAC	3 cut(s)	1087, 2095, 2475
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	6 cut(s)	18, 550, 1154, 2484, 2594, 2716
Tth111I	GACNNNGTC	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	503
XagI	CCTNNNNNAGG	1 cut(s)	873
XapI	RAATTY	3 cut(s)	88, 448, 2121
XbaI	TCTAGA	1 cut(s)	872
XceI	RCATGY	4 cut(s)	925, 986, 2061, 2290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	613
XmiI	GTMKAC	2 cut(s)	987, 2706
XmnI	GAANNNNTTC	4 cut(s)	1447, 1982, 2226, 2654
XspI	CTAG	8 cut(s)	873, 909, 1488, 1775, 1838, 2018, 2733, 2766
ZraI	GACGTC	1 cut(s)	2475
Zsp2I	ATGCAT	4 cut(s)	927, 1564, 1811, 1960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.