Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011908

Physical Location & Seq

Genomic Coordinates Reverse (-)

21457237 .. 21460141

Gene Structure 2905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0125300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCCGAAAACACTGAAATTGTAAGCAGAGATGAAGGCCCTAAAAAACCCATCAACTTATTCGCCCTCTTTCCCAAGTGTAAGCTTCAATTTCCATTCTGGAAGCAGCAAGAACAAAAACCAGGGGTGGTGCCTGTTGAAGATGAAGCTACGAACACTGGCACTCAGAAACCGGTCACTGTGAGCTTCCCAAAAGCCCAACCCGTCGTTCCTACTGTGGCTGCTGAGGTTGAAGAACCCATGACCAAGACTTCCAATCCCATTATAGTCTGGCAGGATGTGATGAATTACTCCACGAGACCAGAAATGACCTGCGCAGAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 RRM_1

Protein Analysis

108

Amino Acids

12.15

Weight (kDa)

4.95

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04810 AT5G04810
fragaria_vesca	FvH4_7g06690
malus_domestica	MD07G1061700.v1.1
prunus_persica	Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1 Prupe.2G071400_v2.0.a1
pyrus_communis	pycom07g04720
rosa_chinensis	RchiOBHm_Chr1g0336351
rosa_laevigata	RLG00000029372
rosa_multiflora	Rmu_sc0005261.1_g000013 Rmu_sc0005480.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315730
rosa_rugosa	Rorug01G0125300
rosa_samantha	Rh1AG144500 Rh1BG114100 Rh1CG136000 Rh1DG151200
rosa_wichuraiana	Rw1G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	316
Acc36I	ACCTGC	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	130
AcoI	YGGCCR	1 cut(s)	3
AgeI	ACCGGT	1 cut(s)	172
AgsI	TTSAA	3 cut(s)	89, 140, 233
AjnI	CCWGG	1 cut(s)	121
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AluBI	AGCT	3 cut(s)	85, 149, 186
AluI	AGCT	3 cut(s)	85, 149, 186
Alw26I	GTCTC	1 cut(s)	292
AoxI	GGCC	2 cut(s)	3, 37
ApeKI	GCWGC	2 cut(s)	106, 221
AsiGI	ACCGGT	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	130
BauI	CACGAG	1 cut(s)	295
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	118, 208
BccI	CCATC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	292
BfuAI	ACCTGC	1 cut(s)	320
BisI	GCNGC	2 cut(s)	107, 222
BlsI	GCNGC	2 cut(s)	108, 223
Bme1390I	CCNGG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	122
BsaWI	WCCGGW	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	283
BseMII	CTCAG	2 cut(s)	179, 216
BseNI	ACTGG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	118, 208
BshFI	GGCC	2 cut(s)	5, 39
BshNI	GGYRCC	1 cut(s)	130
BshTI	ACCGGT	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	292
BsnI	GGCC	2 cut(s)	5, 39
Bso31I	GGTCTC	1 cut(s)	292
BspANI	GGCC	2 cut(s)	5, 39
BspCNI	CTCAG	2 cut(s)	178, 217
BspLI	GGNNCC	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	122
BssSI	CACGAG	1 cut(s)	295
Bst2BI	CACGAG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	181, 217
BstDEI	CTNAG	2 cut(s)	165, 225
BstF5I	GGATG	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	317
BstMAI	GTCTC	1 cut(s)	292
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	118, 208
BsuRI	GGCC	2 cut(s)	5, 39
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	3 cut(s)	12, 156, 177
BveI	ACCTGC	1 cut(s)	320
CfoI	GCGC	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	38
CspAI	ACCGGT	1 cut(s)	172
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	7 cut(s)	5, 39, 85, 149, 186, 197, 221
CviKI_1	RGCY	7 cut(s)	5, 39, 85, 149, 186, 197, 221
DdeI	CTNAG	2 cut(s)	165, 225
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	121
FaeI	CATG	1 cut(s)	244
FaiI	YATR	2 cut(s)	242, 266
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	2 cut(s)	107, 222
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	107, 222
FspI	TGCGCA	1 cut(s)	316
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	2 cut(s)	107, 222
HaeIII	GGCC	2 cut(s)	5, 39
HapII	CCGG	1 cut(s)	173
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HindIII	AAGCTT	1 cut(s)	83
HpaII	CCGG	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	100
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	2 cut(s)	181, 217
HpyF3I	CTNAG	2 cut(s)	165, 225
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	1 cut(s)	315
LpnPI	CCDG	9 cut(s)	85, 108, 135, 144, 147, 186, 256, 260, 315
Lsp1109I	GCAGC	2 cut(s)	118, 208
MaeIII	GTNAC	1 cut(s)	175
MboII	GAAGA	2 cut(s)	152, 245
MluCI	AATT	3 cut(s)	18, 89, 286
MnlI	CCTC	2 cut(s)	77, 220
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	175
NsbI	TGCGCA	1 cut(s)	316
PinAI	ACCGGT	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	108, 223
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	38
SatI	GCNGC	2 cut(s)	107, 222
Sau96I	GGNCC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	5 cut(s)	87, 151, 188, 231, 314
Sse9I	AATT	3 cut(s)	18, 89, 286
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	181, 217
TasI	AATT	3 cut(s)	18, 89, 286
TscAI	CASTG	3 cut(s)	19, 163, 184
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	2 cut(s)	106, 221
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	48, 159, 299
TspRI	CASTG	3 cut(s)	19, 163, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.